LOCUS       NZ_CP087316             6078 bp    DNA     circular CON 12-SEP-2023
DEFINITION  Acinetobacter baumannii strain OC059 plasmid p4OC059, complete
            sequence.
ACCESSION   NZ_CP087316
VERSION     NZ_CP087316.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23078459
            Assembly: GCF_024749525.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 6078)
  AUTHORS   Mellmann,A.
  TITLE     Sequencing of Acinetobacter baumannii genomes to construct genome
            database for SNP detection
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6078)
  AUTHORS   Mellmann,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-NOV-2021) Inst. Hygiene, University Hospital Muenster,
            Robert-Koch-Str. 41, Muenster 48149, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 422x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/12/2023 05:46:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,810
            CDSs (with protein)               :: 3,810
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 24 of 77
            Pseudo Genes (incomplete)         :: 48 of 77
            Pseudo Genes (internal stop)      :: 17 of 77
            Pseudo Genes (multiple problems)  :: 11 of 77
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP087316.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6078
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="OC059"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p4OC059"
                     /geo_loc_name="Germany"
     gene            356..1042
                     /locus_tag="LO007_RS19895"
     CDS             356..1042
                     /locus_tag="LO007_RS19895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004986708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WP_258579723.1"
                     /translation="MSKLPRFHNKHIEKRKYSNSLLAKSISSKVRFSNKTFFNVNLRGS
                     RLRSCSFKNIKIVLSDFSGVILNKNRFTNVHFKKCVFYAAIFRDCRFKNCTFEKCIFIN
                     TNTESLNHSILDCSKKYNFYEMKIPDDLKDQLTEYRNIPILQKNRLLHLKGGRINTATL
                     FILLSKISKYKLLNGLKKIYIEEQSKVKILSTFKLLEEIKNLVDTNTAFKQNNCALPHP
                     IERLDS"
                     /name="pentapeptide repeat-containing protein"
     gene            1133..1666
                     /gene="aadB"
                     /locus_tag="LO007_RS19900"
     CDS             1133..1666
                     /gene="aadB"
                     /locus_tag="LO007_RS19900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000381802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /protein_id="WP_010883707.1"
                     /translation="MDTTQVALIHQILAAADERNLPLWIGGGWAIDARLGRVTRKHDDI
                     DLTFPGERRGELEAIVEMLGGRVTEELDYGFLAEIGDELLDCEPAWWADEAYEIAEAPQ
                     GSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRFACTSLGAEK
                     VEVLRAAFRSRYAA"
                     /name="aadB"
     gene            complement(1825..2493)
                     /locus_tag="LO007_RS19905"
     CDS             complement(1825..2493)
                     /locus_tag="LO007_RS19905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000423610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_000423610.1"
                     /translation="MELSNDAVLKIEQALSIPRLSKYENFYKDKGEPYEKSDVLMLYER
                     NLIISNKFFYLLNYFEVVLRNAVVQAIEISFRCNETNSWHENEAFIRSLSRRGRYSPKS
                     MFDSAKEKFPDSPSKMIPELKFVFWQKMLMANYEERIWQGCFNSIFPNATVENRQIFYD
                     WTDQLRELRNRIAHHEPIIFNRNLENDLEVLTKFIYCRCINTYDFIEQSALDLKEYLDF
                     "
                     /name="Abi family protein"
     gene            complement(2626..3111)
                     /locus_tag="LO007_RS19910"
     CDS             complement(2626..3111)
                     /locus_tag="LO007_RS19910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005200081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_051064109.1"
                     /translation="MNNNCVVVLTARGKTRILKEGGSQSWRLNAHNAGKCDYLVCVQNR
                     KQSWGEPEADHHTAFLVGKISSISQSQEEDADGRWIINISEYADISIPNMWDGNRNPVS
                     YSSLEEMNIDLNELKFTKLNEDNSSKTLDKISIPEAKRLLANYFDVPQENISITINM"
                     /name="hypothetical protein"
     gene            complement(3220..5034)
                     /locus_tag="LO007_RS19915"
     CDS             complement(3220..5034)
                     /locus_tag="LO007_RS19915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_000634474.1"
                     /translation="MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLNGDVELTAQLID
                     SSPFAKKYTSGCLSFYEHDLSDQDKQKIMQNFEECLFPGLDKDQYQILWVQHQDKINQD
                     TGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNTEHSLYDPDDPEHRQL
                     FLNKKNLPKDIKDFKAQLHQRVYRAVANGDVADRQELVQWLESNQINVTRQVKNSISIE
                     NPYEGAKRPIRLEGEIYEQGFRATGEYRQEVQQRIEEYRGTTSERYRTNVTDYQRQLEH
                     KSQYHCDRYPTVGRENSPEHSKQRPDGREAVKPVSNLAAIEIEPFNAIKRANTEPRTTS
                     PESSGTEKTYHFEYGTDFSSSYFAYSNFLAWSRHQKQVQRDADAKYRDQREANEGRPFE
                     PIGRQFDDQHMQATRQQSTAPMYSDQQERRRMAERLHDSNGVLNDDRIRNTIIENHRRT
                     TATINATTSAIAEATASFRHNANQNYPSLVSTIKDNQERSAKLTASTEIISDNAEAISR
                     ARTKYSKLYRADQWQSPRDEPYHSQQRRNSGENLNHTAFCLVRSSQSAAEFARNIRDIE
                     KNLVQMNERKQEIEKPRPKQDRGMDFGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(5024..5431)
                     /locus_tag="LO007_RS19920"
     CDS             complement(5024..5431)
                     /locus_tag="LO007_RS19920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000016535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000016535.1"
                     /translation="MSGQEQENKQSKAVRERTFKVRLSESEYQLLDSNNPYGSIAKLLR
                     QAAVEKATKIHNSKAEDDQKIKATKVVESSYSKTERALILELGRIGNNVNQIAKAVNTD
                     IAGVGTFDKVKLLHLLISIDQQLRELRPDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             1134..1663
                     /name="ant(2'')-Ia"
                     /gene="ant(2'')-Ia"
                     /gene_name="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="98.31"
                     /coverage="100.0"
     ARG             1122..1666
                     /name="ANT(2'')-Ia"
                     /gene="ANT(2'')-Ia"
                     /gene_name="ANT(2'')"
                     /tool="rgi"
                     /drug_class="aminoglycoside antibiotic"
                     /identity="97.74"
                     /coverage="102.26"
     Typing          complement(3224..5034)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttattccctc cacatgcaac gcatatcttc cttaaaaaag gcgcacagaa gtagataaag
       61 ctcgaccgtt aggtgcttat ttgatgattt aaactgctga attaacgaag gacttcaaat
      121 tgaggcttgt caaactgttc taattcttta aaatagatag tggtactagc ctttaaggtg
      181 aatatcagta tgagttgcaa gctctgccga tctttcgtta attgatgttg caagcatcaa
      241 ataactgtac ccatcgaatt taaaactaat ggacagattt cgcaagagac ctgtccatta
      301 ttttttttga ttacacctaa gaattaagct gaaactccta ttctttggac tattaatgtc
      361 aaaacttcct agatttcata acaagcacat cgaaaaacgt aagtattcaa atagcctcct
      421 agccaaatct atttcttcta aagtacgttt ctctaataaa acatttttta atgttaattt
      481 gagaggatcc cgcctacgat catgttcatt caaaaatata aaaattgttt tatctgattt
      541 ttcaggagta atcttaaata agaataggtt tacgaatgtt cacttcaaaa agtgcgtatt
      601 ttatgctgct atttttagag attgtcgctt taaaaattgc acatttgaaa aatgcatttt
      661 tattaataca aatacagaaa gcctaaatca ctcgatatta gactgttcta aaaaatataa
      721 tttttacgaa atgaaaattc ctgatgactt aaaagatcaa ctaacagaat atagaaatat
      781 tccaatactg caaaaaaacc gtttacttca tctaaaaggg ggaagaatca ataccgcaac
      841 cttattcatt ctcctatcca aaatatccaa atacaagctg ctaaatggtc ttaaaaaaat
      901 ttatattgag gaacaaagta aagtaaaaat acttagcact ttcaaactcc ttgaagaaat
      961 aaagaaccta gttgacacta acaccgcatt caaacagaat aattgtgctc tgccccatcc
     1021 aatcgaaagg ttggatagtt aagacaatca ctgggagctc actattggat gtaacaattc
     1081 aattaatagt ctaattactg acattctggg agggcttact atgttaggcc gcatggacac
     1141 aacgcaggtc gcattgatac accaaattct agctgcggca gatgagcgaa atctgccgct
     1201 ctggatcggt gggggctggg cgatcgatgc acggctaggg cgtgtaacac gcaagcacga
     1261 tgatattgat ctgacttttc ccggcgagag gcgcggcgag ctcgaggcaa tagttgaaat
     1321 gctcggcggg cgcgtcacgg aggagttgga ctatggattc ttagcggaga tcggggatga
     1381 gttacttgac tgcgaacctg cttggtgggc agacgaagcg tatgaaatcg cggaggctcc
     1441 gcagggctcg tgcccagagg cggctgaggg tgtcatcgcc gggcggccag tccgttgtaa
     1501 cagctgggag gcgatcatct gggattactt ttactatgcc gatgaagtac caccagtgga
     1561 ctggcctaca aagcacatag agtcctacag gttcgcatgc acctcactcg gggcggaaaa
     1621 ggttgaggtc ttgcgtgccg ctttcaggtc gcgatatgcg gcctaacaat tcgtccaagc
     1681 cgacgccgct ttgcggcgcg gcttaactca ggtgttagga aacactgcta ccgttatcgg
     1741 atttactgct ttactactaa ccttgttaat tcaacatttg caaaatagtc tgacctttcg
     1801 attgtttggg gtgaaattct tatcttaaaa atctaaatat tcttttagat ctaatgcaga
     1861 ttgctcgata aaatcgtatg tattaataca acgacagtaa ataaattttg ttaaaacctc
     1921 taaatcattt tctagattac ggttaaaaat aatcggttca tgatgagcaa tcctgtttct
     1981 taattcacgt aattgatctg tccaatcgta aaaaatttgc ctgttttcaa ctgttgcatt
     2041 aggaaaaata gaattaaaac atccctgcca aatacgttct tcataattag ccataagcat
     2101 cttttgccag aatacaaatt taagctcagg gatcatttta ctaggcgaat ctgggaactt
     2161 ctctttagca ctatcaaaca tacttttagg gctatacctc cctctacggc taaggcttcg
     2221 aataaaagct tcattttcat gccaactatt tgtttcatta cacctaaaag atatttctat
     2281 tgcctgaaca acagcatttc tcagaacaac ttcaaaataa tttaataagt aaaaaaactt
     2341 attggaaatt attaaattac gttcataaag catcaataca tcagattttt catatggttc
     2401 acctttatct ttatagaaat tttcatactt agataagcgt ggtatagata aagcctgctc
     2461 tatcttaagc actgcatcat ttgacaattc caccgtatat accctaatat atagttgtaa
     2521 gtttgagaga ctgcggatct aagatcttcc ctcccaagcg ctaagattca aaaaagcctt
     2581 tcattaacgt gaaaggcttt tttctttttt tggtcaatta aaagcttaca tattgattgt
     2641 aattgaaata ttttcttgag ggacatcaaa ataattagct aatagtctct tagcttcagg
     2701 aatagatatt ttatccagtg ttttagaaga attatcttca tttaatttgg taaatttcag
     2761 ctcattcaaa tcgatattca tctcttctaa tgaactataa gaaactggat tccgattacc
     2821 atcccacata ttgggaatag atatatcagc atattcggag atatttatta tccatctacc
     2881 atctgcatct tcttcttgag attggctgat actagatatt ttgccaacta aaaatgcagt
     2941 gtgatgatca gcctctggtt ctccccaaga ttgtttccta ttttgcacac aaactagata
     3001 atcgcacttt cctgcattat gagcatttag tctccaagac tgactaccac cttcttttaa
     3061 aattctagtc tttccacgag cagttagtac tactacacag ttattattca taacaccacc
     3121 aaaatatata aacaagccta tactacattc aatatagcta aatttaaaca ttagtacaag
     3181 ctaatactaa gaaataaaca ccaacatact agaaaataat tacatcccaa aatccatacc
     3241 tcgatcttgc ttaggtcgag gtttttctat ctcttgttta cgctcattca tctggacgag
     3301 atttttttca atatctcgga tgtttcgagc aaattctgct gcgctttggc tacttctgac
     3361 gagacagaat gctgtgtggt tgagattctc tccagaattt cttcgttgtt ggctgtgata
     3421 aggctcatct ctcggacttt gccattgatc tgctcggtat agcttgctgt acttcgttct
     3481 agctcgtgaa attgcttctg cattgtcgct aatgatttct gtgcttgctg taagctttgc
     3541 tgatcgctct tgattgtctt tgattgtgct gacaaggctt ggataatttt ggtttgcatt
     3601 gtgtctaaag cttgctgttg cttctgcaat tgcacttgtt gttgcattaa ttgttgctgt
     3661 tgttcttcga tgattctcaa taattgtgtt tctaattcgg tcatcgttta ataccccatt
     3721 ggaatcatgt agccgttctg ccattcgcct gcgttcttgt tgatctgaat acataggcgc
     3781 tgtgctttgc tgtctggtcg cttgcatgtg ctgatcgtca aactgcctcc cgatcggttc
     3841 aaatggtcga ccctcatttg cttctcgttg atcacggtat ttagcgtctg catctcgctg
     3901 tacttgtttt tggtgacgag accaagcgag aaaattgcta taagcaaaat aactgctact
     3961 gaaatcagtc ccatattcaa agtggtaagt tttttctgta ccgcttgatt ctgggcttgt
     4021 tgttcttggc tctgtatttg ctcgtttaat tgcgttaaat ggctcaattt cgattgcagc
     4081 aaggtttgat acaggcttaa ctgcttctcg accgtctggg cgttgttttg aatgctctgg
     4141 gctattttct cgtccgactg ttggatagcg gtcgcagtga tattggctct tatgttcaag
     4201 ctgtctctga tagtctgtga cgtttgttcg ataccgctca gaagttgttc ctctgtattc
     4261 ttcaattcgt tgttgtactt cttgtctata ttcgccagta gctctaaagc cttgctcata
     4321 aatctcgccc tctaaacgga tgggacgttt tgcgccctca tatgggtttt caatggatat
     4381 ggagtttttt acttgtcgag tgacattgat ttgattcgat tcaagccatt gcaccaattc
     4441 ttgccgatcg gcaacatcac cattggcaac cgctcggtaa acacgttgat gtaactgcgc
     4501 tttaaaatcc ttaatatctt tgggtaggtt ctttttattt aaaaatagct gtcgatgctc
     4561 aggatcatcg gggtcataca gtgaatgttc ggtattagtg atctgcttaa atagatcgac
     4621 tcgatctaaa tcgactggcg catagaatgg ctgtaggcgt ttgcctgttg aaagctcaac
     4681 attaggaatc acaaaattaa gctcaagcct tgtctcacct gtgtcctgat taattttgtc
     4741 ttggtgctgt acccataaaa tttgatattg gtctttatct agtcccggga ataaacattc
     4801 ctcaaaattt tgcatgattt tctgtttatc ctggtcagat aaatcatgct cataaaagga
     4861 caaacaacca ctggtatatt ttttggcaaa aggactgcta tcaatgagtt gtgctgtcag
     4921 ttctacatca ccattgagca cttgagcatg ttcacgctct cgatcttcac ctaacaaata
     4981 atcgagacag ccttttgata aacctgaacc atgtctaaag aaatcaacga tcatctggac
     5041 gtaactcccg aagctgctga tctatggaaa tcaacaaatg aagtaacttc actttgtcaa
     5101 aagtacctac ccctgcaata tcggtattca ctgctttagc aatctgattc acattgttgc
     5161 caatccgacc aagctctaaa attaatgctc gctctgtctt gctatacgaa gattcaacaa
     5221 cctttgttgc tttaattttt tggtcatctt ctgctttgga attatgaatt ttagtcgctt
     5281 tctctactgc tgcttgtcta agcaactttg caatcgaacc ataaggatta ttggaatcga
     5341 gcaattgata ttctgattct gaaagtctga ctttaaaggt tcgttctcga actgctttgc
     5401 tctgtttgtt ttcttgttcc tgtcctgaca tttcaatcta ccctgctttg gcttttgtaa
     5461 gctttaaatt ggaaaatctt tgatttttct gtttaaagct tttcgggggt atcgggggtg
     5521 aagcccctga tcaaggtcac agactatcac tgtttaacga agttaaatag gggtagctgt
     5581 gtatccttgc ttatttaaaa atggacgagt gaaattcaat aaaaactaat caaatgacac
     5641 ggtatataaa ctctagtagg tattggcatg aatcttgtaa aaacaaatgc gctcaactct
     5701 ttctcaccgt ccccacatcc ctcgctttgc tcgggctgat ggtgaacgtt gagagagttt
     5761 cggcaatact ttccctaaga ggctttgatt taaaaaaatc aaatatcctc ttaagtattg
     5821 ccgattaacc tgtaattggg ctgacggagc cacgcatcgg tcgtatccgc acatggtttt
     5881 gctgaccatg cagacaagga ctaaaggttt tgcaccttct cccacgcgct ccctgtcgaa
     5941 gtatggtggt atctctgcga ggattactcc aacatgcaac ttaaccaacc tatacaacta
     6001 cttccaacgc tccgcctatg tgagatcccc tgtaagcggt ttagccttgc gactatcgct
     6061 acgatgcacc agtgacac
//
