LOCUS       NZ_CP085322             1475 bp    DNA     circular CON 11-FEB-2024
DEFINITION  Staphylococcus aureus strain CJFA-182 plasmid pCJFA-182_2, complete
            sequence.
ACCESSION   NZ_CP085322
VERSION     NZ_CP085322.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22357910
            Assembly: GCF_034809545.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Lee,G.Y. and Yang,S.-J.
  TITLE     The prevalence and antimicrobial resistance of MRSA isolated from
            chicken farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1475)
  AUTHORS   Lee,G.Y. and Yang,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2021) Department of Veterinary Microbiology, Seoul
            National University, 1, Gwanak-Ro, Gwanak-Gu, Seoul 08826, South
            Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Trycycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 207.0x
            Sequencing Technology :: Illumina iSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/11/2024 14:07:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,969
            CDSs (total)                      :: 2,887
            Genes (coding)                    :: 2,766
            CDSs (with protein)               :: 2,766
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 47 of 121
            Pseudo Genes (incomplete)         :: 63 of 121
            Pseudo Genes (internal stop)      :: 36 of 121
            Pseudo Genes (multiple problems)  :: 24 of 121
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP085322.1.
            Bacteria and source DNA available from Seoul National University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="CJFA-182"
                     /isolation_source="Beak of a broiler"
                     /host="Gallas gallas domesticus"
                     /db_xref="taxon:1280"
                     /plasmid="pCJFA-182_2"
                     /geo_loc_name="South Korea: Jeolla"
                     /lat_lon="36 N 127 E"
                     /collection_date="2019-05-20"
                     /collected_by="Chung-Ang university"
     gene            complement(join(1064..1475,1..506))
                     /locus_tag="LI754_RS14845"
     CDS             complement(join(1064..1475,1..506))
                     /locus_tag="LI754_RS14845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_231385369.1"
                     /translation="MSRPKMIYLEDEKTILDFHQKMTGGKLVVYLTYDQLNAQNSPLFD
                     SYDIKVKAYGSGIYKLLRYKNPRKKSNTNFTTLTHCRDYLNMSDKEKQKILEESRKSHL
                     FEVKNLIKDYILCNDFDMFWTLTFDPKRCVEAIEDEYRFKEFGKWLQKMRMRHKRKSDK
                     PFNYIAIPERHKSGQIHWHMVTGNLDPNLVDSGKTFRNQKIYNCTDWEHGFTNVQKMRS
                     KSKVSSYVTKYITKGLLYSPVRKHKKKYFCSKGLALPEVYAGTFEELKYILPVCDKYGA
                     LNPSHSNDVCDIWLFKAGVNWEKA"
                     /name="hypothetical protein"
ORIGIN
        1 gctatatagt taaatggctt atcactttta cgcttatgtc tcatcctcat tttttgaagc
       61 cacttcccaa actccttaaa tctatattca tcctcgatag cttcaacaca tctttttgga
      121 tcaaatgtta gtgtccaaaa catatcgaag tcattacaca aaatataatc ctttatcaaa
      181 tttttaactt caaaaagatg actttttcgg ctttcttcta aaattttttg cttttcttta
      241 tcactcatat ttaagtaatc tctacagtgc gttaaagtag taaaatttgt gttagatttt
      301 tttcgcggat ttttgtaacg caaaagctta taaatgccgc taccataagc tttgacctta
      361 atatcataag agtcaaaaag gggtgaattt tgtgcgttaa gttggtcgta tgtcaagtag
      421 acgaccaact tccctcccgt cattttttgg tgaaaatcca agatagtttt ttcgtcttcc
      481 aaataaatca ttttcggtct actcataata aaaaaacccc tttccagttt tgaaaaagag
      541 ttacaacaca tccaaatttg ttagcttgat ttttttcact tgctaaagta atatacaaac
      601 taacaaacgt attcgttaca acacaaagtt tggtcgctgg gtgttgtagc tctttttatt
      661 tggtttagct atataatagc atttagcgcg tgtacggtct atccagacta gtgcacgtgc
      721 tttttttatt tattccaatt tccttttgga catggaacct ttgggctata tgcctttcta
      781 ttggtgcttg cttggtctaa tcccaattca atcactcacc aatattagct tacgctatag
      841 catatagccc ttttccatat caaaagtttt ctcggcataa atgagaatgc ctctatttgc
      901 catttaaacg ctcatatacg cgctatacgc atttttacag acaaaatgta ccctctggct
      961 attaggcttc gcctaaacac gttatacgct cgtctgaccg ccctgctggg acggctccgc
     1021 cttgccaatt ccattgacac cctcagacaa cgcttctaac gtgttacgct ttctcccaat
     1081 tcaccccagc cttaaacagc caaatatcac acacatcatt gctatgcgat ggatttaatg
     1141 caccatactt atcacacaca ggcaaaatgt atttaagctc ttcaaaagta ccagcgtata
     1201 cctcaggtaa tgctaagccc ttgctacaaa aatatttctt cttgtgcttt ctaacaggac
     1261 tatacagcaa gcctttggta atgtatttag tcacataact acttaccttt gatttcgacc
     1321 gcattttttg aacattcgta aatccatgtt cccagtcagt acagttataa atcttttgat
     1381 tcctaaaagt ttttccgcta tcaaccagat tagggtctaa attccccgta accatatgcc
     1441 aatgtatttg cccgctttta tgacgctcag gtatc
//
