LOCUS       NZ_CP084851             1240 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain SB611 plasmid pKp_SB611_8, complete
            sequence.
ACCESSION   NZ_CP084851
VERSION     NZ_CP084851.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22024795
            Assembly: GCF_020525985.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Hawkey,J., Vezina,B., Monk,J.M., Judd,L.M., Harshegyi,T., Brisse,S.,
            Holt,K.E. and Wyres,K.L.
  TITLE     A curated collection of Klebsiella metabolic models reveals variable
            substrate usage and gene essentiality
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Hawkey,J., Vezina,B., Monk,J.M., Judd,L.M., Harshegyi,T., Brisse,S.,
            Holt,K.E. and Wyres,K.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2021) Infectious Diseases, Monash University, 85
            Commercial Rd, Melbourne, VIC 3004, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JAN-2021
            Assembly Method :: Trycycler; Medaka; Pilon v. 0.3.3; 1.3.3; 1.23
            Assembly Name                     :: Klebsiella pneumoniae SB611
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50x
            Sequencing Technology :: Minion (Oxford Nanopore) and NextSeq
            500/550 (Illumina)
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 04:20:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,779
            CDSs (total)                      :: 5,656
            Genes (coding)                    :: 5,441
            CDSs (with protein)               :: 5,441
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 215
            CDSs (without protein)            :: 215
            Pseudo Genes (ambiguous residues) :: 0 of 215
            Pseudo Genes (frameshifted)       :: 61 of 215
            Pseudo Genes (incomplete)         :: 163 of 215
            Pseudo Genes (internal stop)      :: 19 of 215
            Pseudo Genes (multiple problems)  :: 25 of 215
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP084851.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SB611"
                     /host="Water"
                     /db_xref="taxon:573"
                     /plasmid="pKp_SB611_8"
                     /geo_loc_name="Netherlands"
                     /collection_date="2000"
     gene            complement(141..650)
                     /locus_tag="LGM15_RS28850"
                     /old_locus_tag="LGM15_28850"
     CDS             complement(141..650)
                     /locus_tag="LGM15_RS28850"
                     /old_locus_tag="LGM15_28850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_023206179.1"
                     /translation="MIVASEHQAKLRQKEIQEIDKKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 attacaaaag tgatgtgctg ttttatttat ttatgggatc tactgcttaa agggcggctt
       61 attatgggga tggctcgctg tggcgaacca tccccctttc tgagggtggg ggtcgttccg
      121 agccgtcaag agtcgcttcg ctactgctct tgaccgctct cctctccgga aaacatagcc
      181 attatccggc gttttatttc tccatccttg ttcactaatg tcttggtaac aaaggctgag
      241 tagtcttttg atgtgttata tcccttccag acttcgtgag gatctaaagc gtaagcacaa
      301 acctttccag caactggtat tcttaccaaa gcacctttct cctccaaata atctaaccaa
      361 cgacgaattg ttcgagtaga aacacccatc tgattagcta aaaactgctg atcgcagacc
      421 actgcaccgc atgtaggatc tatgtgttca gcgaaaaatg agtaaagacc tatagcggca
      481 gcaccctgtt tgtccctcac aagctctcta atgcgttgcc agccctttgg gtatgtctga
      541 gtgaagttac tgttcttctt tgcctcctcg tgctctttag atgccttctt gtcgatttcc
      601 tgtatttctt tctgccttag ctttgcttgg tgttctgaag ctacgatcat ctttatccct
      661 cggtgtcttt ttgataggac atttttgtcc catcatagga cttgtggtgt cctatgtcca
      721 gccacatgcg gacaccagct gtgtcctcac gtgcggacac cagctgtgtc ctatcagaaa
      781 aaaccaaaac tataaaaatc aataacttat tatttatctc tattctcttc tatgaaaacc
      841 aacagacaac accaaagttc aaggtagctc cctccctccg gtcgggcatt ttgagggtca
      901 gggttcgcca taggcgaccg cgttagcggc ttgaccttga cgatcaaaat gcccgtttaa
      961 ccttgtatct ggtgatggct cgcgtagtga gccatcacca tgattgacgg ttttcagggg
     1021 tttcggggcg aagccctgaa ccagtcactc cgctagcgga gtgtatactg gctaattagt
     1081 gcttatcctt cgggtatatc tctcggtaaa tcgttatgag actcccaatt aagccgatga
     1141 ttgtgatgat tgttgacgtg atcatgatga cctccttgtc ggtaaagttt ctgtattaca
     1201 ttcctggcta acttctttta gtcccaaagg aatgccgcac
//
