LOCUS       NZ_CP084817             1916 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB1124
            plasmid pKqq_SB1124_11, complete sequence.
ACCESSION   NZ_CP084817
VERSION     NZ_CP084817.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22024802
            Assembly: GCF_020525825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Hawkey,J., Vezina,B., Monk,J.M., Judd,L.M., Harshegyi,T., Brisse,S.,
            Holt,K.E. and Wyres,K.L.
  TITLE     A curated collection of Klebsiella metabolic models reveals variable
            substrate usage and gene essentiality
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Hawkey,J., Vezina,B., Monk,J.M., Judd,L.M., Harshegyi,T., Brisse,S.,
            Holt,K.E. and Wyres,K.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2021) Infectious Diseases, Monash University, 85
            Commercial Rd, Melbourne, VIC 3004, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JAN-2021
            Assembly Method :: Trycycler; Medaka; Pilon v. 0.3.3; 1.3.3; 1.23
            Assembly Name :: Klebsiella quasipneumoniae subsp. quasipneumoniae
            SB1124
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50x
            Sequencing Technology :: Minion (Oxford Nanopore) and NextSeq
            500/550 (Illumina)
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 04:46:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,784
            CDSs (total)                      :: 5,657
            Genes (coding)                    :: 5,426
            CDSs (with protein)               :: 5,426
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 82 of 231
            Pseudo Genes (incomplete)         :: 153 of 231
            Pseudo Genes (internal stop)      :: 38 of 231
            Pseudo Genes (multiple problems)  :: 36 of 231
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP084817.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella quasipneumoniae subsp.
                     quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SB1124"
                     /host="Water (environment)"
                     /sub_species="quasipneumoniae"
                     /db_xref="taxon:1667327"
                     /plasmid="pKqq_SB1124_11"
                     /geo_loc_name="Netherlands"
                     /collection_date="2002"
     gene            248..550
                     /locus_tag="LGM22_RS28875"
                     /old_locus_tag="LGM22_28875"
     CDS             248..550
                     /locus_tag="LGM22_RS28875"
                     /old_locus_tag="LGM22_28875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            complement(809..1045)
                     /locus_tag="LGM22_RS28880"
                     /old_locus_tag="LGM22_28880"
     CDS             complement(809..1045)
                     /locus_tag="LGM22_RS28880"
                     /old_locus_tag="LGM22_28880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1211..1384)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1363..1854
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 ttggttactg cgctcctcgt aagccagtta ccacggttca aagagttgct gctctgagaa
       61 ccttcgaaaa accgccttgc agggcggttt tttcgtttac agagcaagag attacgacgc
      121 cacagaaagg atctcaagaa gatccttcac cgtaatggaa atctatccaa tccgagcaca
      181 taggatacac atcgttataa aacatcggat attatgatcc caattaaaat aagctcgagg
      241 ataaaaaatg agttcaatgg tttactgccg aggatgtggc aaggaaatac acgaaacagc
      301 aaagtcatgc ccgcactgcg gagccacaaa cgcctcttca ggttcaggtg aaaaaagtag
      361 aatcgcagcc gcgctattag cattcttcct tggtggattt ggcgcacata aattttactt
      421 aggaaaaata ggacaggggt tcctgtatct aattttttgc tggacattca tacccgcgat
      481 catcgcgttt attgagttta ttatttatct atgcgattcc gatgaaaaat tcgcacgaaa
      541 atatggctaa ctcatagcaa aaaaaagccc cctaagggct ttttttgtac ctgacggtca
      601 gaccgattaa acataacatc ccttgcccgc acccccgcag gcgccctcag cgcaatcctg
      661 ctgcatcagg gccgtttcca gcacctttcc tcaccagtat cccggaaaaa cgcccctgat
      721 gatttctgcg cgactgcatg gctatgcacg caggtgaatg gcaggtgatt tcgcagcgtc
      781 agcaccacta aaccgccaaa agccaaaatc agcggcgcgg cgcgcgcgga cgtgaccagg
      841 caaaatcgga ctgctgccgc tcatcctcac gtaatgcacg ctggcggtcg gcgtaacgct
      901 gcaactcaat ttgcgcacgc gctctgttca ggacgatgtg ccggttaggc tgatttagct
      961 ttttacctga cgctctttca gctgcggcaa cagcatcatc aagaaatttt ttctctgcag
     1021 gcgtcaagtt tgtcagtctg gccataacgt tctccagtca gaataaatca gcacagtctg
     1081 ccagacacag tagaaacgat gaagcgccag cgacggtgaa aggcagtcag aaacggtgaa
     1141 cgggagcgga ttttaatccg gtgccgtgag gcgttggaca agccgcaggc gcgtcattag
     1201 cttttagcgg gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata
     1261 ctggctgact atgttggcac ggatgtggaa atcagtgaag tgcttcatgt agcaggagaa
     1321 aaaaggcggc accagcgcgt cagcaggata tgtagtacag gatatattcc gcttcctcgc
     1381 tcactgactc gctgcgctcg gtcgttcggc tgcggcgagc ggtgccggct tacaggcggg
     1441 gcggaaattt cctgggagat accaggaagg agcttaacag ggaagagata aggccgcggc
     1501 gaagccgttt ttccataggc tccgcccccc tgacaaacat catgaaatct gacgctcaaa
     1561 tcagtggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc tggtggctcc
     1621 ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcattccgct gttatggccg
     1681 cgtttatctc attccacgcc tgacactcag ttccgcgaag gcagttcgct cctggatgga
     1741 ctgtatgcac gaaccccccg ttcagtccga ctgctgcgcc ttatccggta actatcatct
     1801 tgagtccaac ccggaaagac acgacttatc gccactggca gcagccactg gtaactgatt
     1861 tagaggagtt agtcttgaag ttatgcgcct gttaaggcta aactgaaaga acagat
//
