LOCUS       NZ_CP084003             2699 bp    DNA     circular CON 09-NOV-2023
DEFINITION  Salmonella sp. A7 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP084003
VERSION     NZ_CP084003.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21245058
            Assembly: GCF_020181675.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. A7
  ORGANISM  Salmonella sp. A7
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Zhao,W. and Li,R.
  TITLE     Salmonella A7-Chromosome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Zhao,W. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2021) College of Biological and Pharmaceutical
            Engineering, Wuhan Polytechnic University, Xuefu South Road,
            Evergreen Garden, Dongxihu District, WuHan 430000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. August-2021
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/09/2023 07:29:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,542
            CDSs (total)                      :: 4,425
            Genes (coding)                    :: 4,318
            CDSs (with protein)               :: 4,318
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 47 of 107
            Pseudo Genes (incomplete)         :: 80 of 107
            Pseudo Genes (internal stop)      :: 20 of 107
            Pseudo Genes (multiple problems)  :: 37 of 107
            Pseudo Genes (short protein)      :: 1 of 107
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP084003.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella sp. A7"
                     /mol_type="genomic DNA"
                     /strain="A7"
                     /isolation_source="pork"
                     /db_xref="taxon:2874627"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:NanChang"
                     /collection_date="2020-12-12"
     gene            join(2207..2699,1..152)
                     /locus_tag="LCS67_RS22715"
                     /old_locus_tag="LCS67_22715"
     CDS             join(2207..2699,1..152)
                     /locus_tag="LCS67_RS22715"
                     /old_locus_tag="LCS67_22715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(654..890)
                     /locus_tag="LCS67_RS22720"
                     /old_locus_tag="LCS67_22720"
     CDS             complement(654..890)
                     /locus_tag="LCS67_RS22720"
                     /old_locus_tag="LCS67_22720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            <1958..2113
                     /locus_tag="LCS67_RS22725"
                     /old_locus_tag="LCS67_22725"
                     /pseudo=""
     CDS             <1958..2113
                     /locus_tag="LCS67_RS22725"
                     /old_locus_tag="LCS67_22725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             2172..2698
                     /name="QnrB10"
                     /gene="QnrB10"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="99.43"
                     /coverage="77.88"
     ARG             4..152
                     /name="QnrB19"
                     /gene="QnrB19"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="22.9"
     Typing          complement(1056..1229)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1208..1699
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 actggcgagc agcaaacttc acacattgcg atctgaccaa ttcggagtta ggtgacttag
       61 atattcgggg tgttgattta caaggcgtta agttagacag ctaccaggca tcgttgctca
      121 tggagcggct tggcatcgct gtgattggtt agttcagcgt ttacaccggg agatgcgttt
      181 gacgatttac ttttaaccag tacgactcct ggcaagcatt gtgaaacgtt ttctccagtg
      241 gacgaatatc ctgacctacc gcatcaacga catgccatct aatgctgcat tctggacagg
      301 aatttgatga atatctaacc aattcatttt cgcgagaaca acgaataacc actcccgaat
      361 catgaagcca tgtcttaacg aaaatatggc taactcatag caaaaaaaaa gccccctaag
      421 ggcttttttt tgtacctgac ggtcagaccg attaaacata acatcccttg cccgcacccc
      481 cgcaggcgcc ctcagcgcaa tcctgctgca tcagggccgt ttccagcacc tttcctcacc
      541 agtatcccgg aaaaacgccc ctgatgattt ctgcgcgact gcatggctat gcacgcaggt
      601 gaatggcagg tgatttcgca gcgtcagcac cactaaaccg ccaaaagcca aaatcagcgg
      661 cgcggcgcgc gcggacgtga ccaggcaaaa tcggactgct gccgctcatc ctcacgtaat
      721 gcacgctggc ggtcggcgta acgctgcaac tcaatttgcg cacgcgctct gttcaggacg
      781 atgtgccggt taggctgatt tagcttttta cctgacgctc tttcagctgc ggcaacagca
      841 tcatcaagaa attttttctc tgcaggcgtc aagtttgtca gtctggccat aacgttctcc
      901 agtcagaata aatcagcaca gtctgccaga cacagtagaa acgatgaagc gccagcgacg
      961 gtgaaaggca gtcagaaacg gtgaacggga gcggatttta atccggtgcc gtgaggcgtt
     1021 ggacaagccg caggcgcgtc attagctttt agccggtttc ggggcgcagc cctgaaccag
     1081 tcacgtagcg ctagcggagt gtatactggc tgactatgtt ggcacggatg tggaaatcag
     1141 tgaagtgctt catgtagcag gagaaaaaag gcggcaccag cgcgtcagca ggatatgtag
     1201 tacaggatat attccgcttc ctcgctcact gactcgctgc gctcggtcgt tcggctgcgg
     1261 cgagcggtgc cggcttacag gcggggcgga aatttcctgg gagataccag gaaggagctt
     1321 aacagggaag agataaggcc gcggcgaagc cgtttttcca taggctccgc ccccctgaca
     1381 aacatcatga aatctgacgc tcaaatcagt ggtggcgaaa cccgatgcgg cttaaagata
     1441 ccaggcgttt ccccctggtg gctccctcgt gctcccccgc attcctgcct ttcggtttac
     1501 cggtgtcatt ccgctgttat ggccgcgttt atctcattcc acgcctgaca ctcagttccg
     1561 cgaaggcagt tcgctcctgg atggactgta tgcacgaacc ccccgttcag tccgactgct
     1621 gcgccttatc cggtaactat catcttgagt ccaacccgga aagacacgac ttatcgccac
     1681 tggcagcagc cactggtaac tgatttagag gagttagtct tgaagttatg cgcctgttaa
     1741 ggctaaactg aaagaacaga tttggttact gcgctcctcg taagccagtt accacggttc
     1801 aaagagttgc tgctctgaga accttcgaaa aaccgccttg cagggcggtt ttttcgttta
     1861 cagagcaaga gattacgacg ccacagaaag gatctcaaga agatccttca ccgtaatgga
     1921 aatctatcca atccgagcac ataggataca catcgttata acgctggatc tgcgtgaatt
     1981 ccagcagcag caagagaaag actttctaca aaccagctta cagcaggcta aatttaacca
     2041 gaaaaaagcc gctgaattac tgggtctgac ttatcatcag ctacgtgcct tgctgaagaa
     2101 acaccagatc taatacgcat ttgcaggtgt catactggcg ggtttgacgc ataacgtcat
     2161 aaggtttacc atggcgtcat tactgtataa aaacacaggc atagatatga ctctggcatt
     2221 agttggcgaa aaaattgaca gaaatcgctt caccggtgag aaagttgaaa atagtacatt
     2281 ttttaactgc gatttttcag gtgccgacct gagcggcact gaatttatcg gctgccagtt
     2341 ctatgatcgc gaaagtcaga aagggtgcaa ttttagtcgc gcaatgctga aagatgccat
     2401 tttcaaaagc tgtgatttat caatggcaga tttccgcaac gtcagtgcct tgggcattga
     2461 aattcgccac tgccgcgcac aaggcgcaga tttccgcggt gcaagcttta tgaatatgat
     2521 caccacgcgc acctggtttt gcagcgcata tatcactaat actaatctaa gctacgccaa
     2581 tttttcgaaa gtcgtgttgg aaaagtgtga gctgtgggaa aaccgctgga tggggactca
     2641 ggtactgggt gcgacgttca gtggttcaga tctctccggc ggcgagtttt cgactttcg
//
