LOCUS       NZ_CP083734             2438 bp    DNA     circular CON 16-NOV-2023
DEFINITION  Salmonella sp. A29-2 plasmid pC, complete sequence.
ACCESSION   NZ_CP083734
VERSION     NZ_CP083734.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21220878
            Assembly: GCF_020150755.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. A29-2
  ORGANISM  Salmonella sp. A29-2
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Liu,Z. and Li,R.
  TITLE     Salmonella drug resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Liu,Z. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2021) School of Biology and Pharmaceutical
            Engineering, Wuhan Polytechnic University, Changqinghuayuannanlu8,
            Wuhan, Hubei 430000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 09-AUG-2021
            Assembly Method :: SOAPdenovo v. V2; unicycler v. V3
            Assembly Name                     :: A29-2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 249.64x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/16/2023 03:02:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,763
            CDSs (total)                      :: 4,640
            Genes (coding)                    :: 4,506
            CDSs (with protein)               :: 4,506
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 40 of 134
            Pseudo Genes (incomplete)         :: 100 of 134
            Pseudo Genes (internal stop)      :: 22 of 134
            Pseudo Genes (multiple problems)  :: 26 of 134
            Pseudo Genes (short protein)      :: 1 of 134
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083734.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Salmonella sp. A29-2"
                     /mol_type="genomic DNA"
                     /strain="A29-2"
                     /isolation_source="market"
                     /host="chicken"
                     /db_xref="taxon:2876620"
                     /plasmid="pC"
                     /geo_loc_name="China"
                     /collection_date="2020-12-20"
     gene            complement(392..691)
                     /locus_tag="K8W53_RS23810"
                     /old_locus_tag="K8W53_23810"
     CDS             complement(392..691)
                     /locus_tag="K8W53_RS23810"
                     /old_locus_tag="K8W53_23810"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016247612.1"
                     /translation="MKKILFCSLLLLSASSFAQQFHYQCEGRDLKIMLSPNAAFLDGKS
                     FEYKNGETNGETTKMTFFGPSGEVLKFLVNPVNNLYRMGLTSGATFEEINCTEI"
                     /name="hypothetical protein"
     gene            complement(715..954)
                     /locus_tag="K8W53_RS23815"
                     /old_locus_tag="K8W53_23815"
     CDS             complement(715..954)
                     /locus_tag="K8W53_RS23815"
                     /old_locus_tag="K8W53_23815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001560795.1"
                     /translation="MIKKICITVIVVFLLLVGYGAWIGSEQNQRGVSLFEVAYTYNAMN
                     PISRIGYTFMLKRNHALVERAGEVKKSIDSMSGE"
                     /name="hypothetical protein"
     gene            complement(1768..1917)
                     /locus_tag="K8W53_RS23820"
                     /old_locus_tag="K8W53_23820"
     CDS             complement(1768..1917)
                     /locus_tag="K8W53_RS23820"
                     /old_locus_tag="K8W53_23820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162846302.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     Typing          complement(1953..2126)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.286"
                     /coverage="100.0"
                     /evalue="2.58e-81"
     Typing          2..366
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.025"
                     /coverage="99.0"
                     /evalue="3.16e-80"
     Typing          2050..2438
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.051"
                     /coverage="90.0"
                     /evalue="1.21e-139"
ORIGIN
        1 acgcctgaca ctcagttccg ggaaggcagt tcgctccaag ctggactgta tgcacgaacc
       61 ccccgttcag tccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccgga
      121 aagacatgca aaagcaccac tggcagcagc cactggtaac tgatttagag gagttagtct
      181 tgaagtcatg cgccggttaa ggctaaactg aaaggacaag ttttggtgac tgcgctcctc
      241 caagccagtt accgcggttc aaagagttgc tgctctaaga accttcgaaa aaaccgcctt
      301 gctgggcggt tttttcgttt tcagagcaag agattacgcg cagaccaaaa cgatctcaag
      361 aagatcatct tattaatcag ataaaatatt tctagatttc agtgcaattt atctcttcaa
      421 atgtagcacc tgaagtcagc cccatacgat ataagttgtt gacaggatta accaaaaact
      481 tgagaacctc accagaagga ccaaagaagg tcatctttgt cgtttcccca ttcgtctctc
      541 cattcttata ttcgaatgat ttaccatcaa gaaaagctgc attaggtgaa agcattatct
      601 ttaaatctcg tccttcacac tgataatgga attgttgtgc aaatgaactt gcagaaagaa
      661 gaagcagcga acaaaaaagt atctttttca tatcagtcct ttaaatttaa aaaatcactc
      721 accactcatg ctatcaatag atttcttaac ctctccagcc ctctcgacta aagcatgatt
      781 tctcttcagc ataaatgtat agccgatccg actaattgga ttcattgcgt tgtatgtata
      841 tgcaacctca aataaagata ctcctcgctg attttgctca gatccaatcc aagcaccata
      901 gccaaccaac agcaaaaaaa cgacgataac agtaatgcag atttttttta tcattcccta
      961 tccagacaat atgaagaaaa cagaattgaa cataacatcc gttgcgtgca ccgcctcaga
     1021 gcctctgagg gcgtttctga cgggaaaccg gtaaaacagg caacaaacca cccgaaaacc
     1081 cgccagaaac gcgcaggctc tgtttttacg gcatgcatga gtatgcgcgc aagtgcatag
     1141 tgcggaaatt cacgccattc agccggggta agtcctgttt ccgatgttct tcttacccga
     1201 aaacggtgaa cggggacgca atttattgcg tggccgtgag gcgttgccgg cacagccgga
     1261 aaaaccgttt tcagcacgtt caggaagggg ggcggatgta caaatggcac agaggatgga
     1321 actgacgtaa aagtgacgta tgagctgaag gaatgatgta aaagtgatgc aaaagtgttg
     1381 taaaagtgat gtacaggccg aaggagtgtt gtaaaagtgt tgtaaaagtg atgtatgaac
     1441 tgaaggagcg atgtaattct gtagtcagga agaataaccc gttcatgcag gcatgaacga
     1501 tacagtgagg aacgcttttt tttgtcacga tctcccctta acctgcgtaa atcaccctcc
     1561 atggttgatt atttttcaac ctcaaaatgg tcatacacct aacgcagccg cgattttcat
     1621 cgcaactgca tgaattaaaa gaaaaaaaag gaatgcttcg ttttcacgag taatacccag
     1681 gtattaaaaa cccactgtaa ttacatgaaa ataaagaaat aaaaggtaat accggcgtat
     1741 taccacgtac gcgggcaagc gaaaaagcta taacgcttcc cggccgacag gcggcccaga
     1801 atccacaggg gcatgcagga tctcttcagt aaccttcgcc attaaatcaa aaaggtcata
     1861 ttcgccggga agctgcgtat cagtcgaacc ccgttgttca tcatattcag atggcatggg
     1921 gtgatatcca gtagcagaga ggttgttagc gggtttcggg gcgcagccct gaaccagtca
     1981 cgtagcgcta gcggagtgta tactggctta ctatgttggc actgatgagg atgtcagtga
     2041 agtgcttcat gtggcaggag aaaaaaggct gcaccggtgc gtcagcagaa tatgtgatac
     2101 aggatatatt ccgcttcctc gctcactgac tcgctacgct cggtcgttcg actgcggcga
     2161 gcggaaatgg cttacgaatg gggcagggat ttcctggaag atgccaggaa gagacttaac
     2221 agggaagcga cagggccgcg gcaaagccgt ttttccatag gctccgcccc cctgacaagc
     2281 atcacgaaat ctgacgctca aatcagtggt ggcgaaaccc gacaggacta taaagatacc
     2341 aggcgtttcc ccctggcggc tccctcgtgc gctctcctgt tcctgccttt cggtttaccg
     2401 gtgtcattcc gctgttatgg ccgcgtttat ctcattcc
//
