LOCUS       NZ_CP083733             4234 bp    DNA     circular CON 16-NOV-2023
DEFINITION  Salmonella sp. A29-2 plasmid pB, complete sequence.
ACCESSION   NZ_CP083733
VERSION     NZ_CP083733.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21220878
            Assembly: GCF_020150755.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. A29-2
  ORGANISM  Salmonella sp. A29-2
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Liu,Z. and Li,R.
  TITLE     Salmonella drug resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4234)
  AUTHORS   Liu,Z. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2021) School of Biology and Pharmaceutical
            Engineering, Wuhan Polytechnic University, Changqinghuayuannanlu8,
            Wuhan, Hubei 430000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 09-AUG-2021
            Assembly Method :: SOAPdenovo v. V2; unicycler v. V3
            Assembly Name                     :: A29-2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 249.64x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/16/2023 03:02:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,763
            CDSs (total)                      :: 4,640
            Genes (coding)                    :: 4,506
            CDSs (with protein)               :: 4,506
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 40 of 134
            Pseudo Genes (incomplete)         :: 100 of 134
            Pseudo Genes (internal stop)      :: 22 of 134
            Pseudo Genes (multiple problems)  :: 26 of 134
            Pseudo Genes (short protein)      :: 1 of 134
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083733.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Salmonella sp. A29-2"
                     /mol_type="genomic DNA"
                     /strain="A29-2"
                     /isolation_source="market"
                     /host="chicken"
                     /db_xref="taxon:2876620"
                     /plasmid="pB"
                     /geo_loc_name="China"
                     /collection_date="2020-12-20"
     gene            complement(join(4024..4234,1..698))
                     /locus_tag="K8W53_RS23795"
                     /old_locus_tag="K8W53_23795"
     CDS             complement(join(4024..4234,1..698))
                     /locus_tag="K8W53_RS23795"
                     /old_locus_tag="K8W53_23795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_058657849.1"
                     /translation="MSAALQYFEENLPHRPYHTDDPAFGLRISGKGRALLARYIQQNQP
                     HAQHWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNLAVRTAPDASVKV
                     LKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASE
                     RRSVDKHYGLGRNCHLFEITRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRKFSPEGFSAVQAARGRKGGLAKGEAYEDKRFMALCMLENGYSQ
                     KAIAAMLDVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     gene            complement(1145..3364)
                     /gene="mobQ"
                     /locus_tag="K8W53_RS23800"
                     /old_locus_tag="K8W53_23800"
     CDS             complement(1145..3364)
                     /gene="mobQ"
                     /locus_tag="K8W53_RS23800"
                     /old_locus_tag="K8W53_23800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_208207315.1"
                     /translation="MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRK
                     RGVDDAVILTPANAPSWCGDRSVLWNAVEKAEQRRNSQLAREIELAIPREISREAAREA
                     VLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTTRAVGETGFAGKVRDWNDRALAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAMEKRGMETERGEQ
                     NRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLRE
                     FIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASI
                     LSELPLMTWAEPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWIS
                     PGMAELKEKLSAREAERRREEAEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELG
                     RAREPGTGRITRYMMLSNRAGEFTVWGDELAHYPQSVHDPVNVYLSPGGAVMVSDIREG
                     MPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPHHWPDNFYFSDDRRPVA
                     SPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLEDELRPV
                     LALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAA
                     INKPEEMPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM"
                     /name="mobQ"
     gene            3543..3818
                     /locus_tag="K8W53_RS23805"
                     /old_locus_tag="K8W53_23805"
     CDS             3543..3818
                     /locus_tag="K8W53_RS23805"
                     /old_locus_tag="K8W53_23805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052995416.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAAMLARVRRP
                     EEAQLRAFLLQFLRKEVTRQADVNRLQPLINELEKLPRPPAKPQNG"
                     /name="hypothetical protein"
     Typing          3007..3365
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3366..3536
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="97.0"
                     /evalue="1.23e-74"
     Typing          complement(2..698)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.699"
                     /coverage="91.0"
                     /evalue="0.0"
     Typing          complement(4025..4234)
                     /name="rep_cluster_2361"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="7.82e-106"
     Typing          complement(1149..3364)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.369"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcaatgctct tgccaatagc ccggcattca gccagtgaaa gaggaacggg aagcgatgcg
       61 ttgtacattt cgacacgctg gatcacggca tcaagccact gtgagaatgc tggccatccc
      121 tgacgaatcg ctctgtaagc ccatttacgc gttatttcga acaggtggca gtttcgcccc
      181 agcccgtaat gtttatcgac gctacgacgc tctgaggcgc tcaaatcgag ataatcagcc
      241 agttcatcga gggtataggc ttcctcgcgc cactccatca cctgccattc caggtggaac
      301 ggatttttgc aaatcagtcc gctgtagttc acatctgcgt caagtttctc acacagcgca
      361 cgttcaattg cagcggcgta tttcagcacc ttaaccgacg catcaggcgc ggttctcacg
      421 gcaagattga gcgcgtatag caggtgagcg tgcccattca cgggattttt tacggtgatg
      481 ttcggcgcgg gggcgttccg gtcgctccag tcaatcgcag ccccctcgcg gtcaacgtca
      541 aaaaccagcc agtgttgcgc atgtggctgg ttctgctgaa tgtaccgcgc aagaagcgca
      601 cgccctttgc cggagatgcg aaggccgaaa gcgggatcat ccgtgtgata gggacggtga
      661 ggtaaatttt cttcgaagta ttgaagcgcg gcgctcatgt gttacgattc cttccaggtt
      721 atcgaccgac atcgcccctg tatcttcgtg aaagtcttgg cggatctaca cgaatttcag
      781 gggcgtttgt ttttcagtcg cttacactac acccaacggc aaatcctgtc gatccttccc
      841 gaaaaaccga tccatttacc ataactcctg ttgtacgtac cccttaaaac gctctcagac
      901 gcgttctgac gcaaaaaaca caaaaagaca agaaaacacc aggccaaacc agaaaaacgc
      961 gtcagaatcg ttttcagggg tctgcataac tattcacgaa agcgatgcgc gatcggtttc
     1021 gaccgttcag aagcgcgaac gggtcaaaac ggcaaacttt ctcatccaga aaacgcctca
     1081 cgggacgcgg aattttttcg tgtcccgtga gacgttggcg gggttcgggg tgcagccccg
     1141 gatatcacat actcatgccc cggtaatgtc cggggcgtcg ttgttgttgc ctgtgctgtt
     1201 cgtcccgctt ccattcatgc caggtctgat taaatccgag ttgacggaag agataatccg
     1261 gcatctcttc cggtttgttg atggcagcaa aaagcgtgtc ctgacagccc ttaagcctga
     1321 actgcatcag cttcggttcc ggtgggtacg gagtatcagc atcacggttt atggcctcac
     1381 cgtagcctgc caggtgtatc ccgttctctg tgatgatgct taccatcaga tgactgtaat
     1441 ccggcgacgg aagcgcaaga acgggacgca gctcgtcctc caggcgcaca aaaccgacaa
     1501 gcatttcctc cggccctttg cacaacagca gattcagcgt cctgctgttt cgctctgtcg
     1561 aaaagacaac gggcatgagt tgctccggtg ccgcataagc ggtgacgtcc acccggtgcg
     1621 ctgacggcag cggagaggct acgggcctgc ggtcgtcgct gaaataaaaa ttatccggcc
     1681 agtgatgcgg cagcgccgga aaaccgtaag agggccaccc ctggcgcatc tgttccagta
     1741 catgccggac cgtcgcaccg gaatacattc tcacacgctc aggccgcgcc atcgtctcat
     1801 gagattctgg cattccctca cgtatatccg agaccatcac agccccgcct ggcgacaggt
     1861 aaacattcac cgggtcatga acactctggg ggtaatgcgc cagctcatca ccccataccg
     1921 tgaattctcc ggctctgtta ctcagcatca tgtagcgggt tatcctgccc gttcccggct
     1981 ctctggcacg ccccagctcc gtaataaccc cggctaatgc cgtttctcgg ctcaggcgat
     2041 ggttatcatg gtgtttcagc cgtgcgtcat attcctgttc cttccggcgc gcttccgctt
     2101 cggcttcctc cctgcgccgc tccgcttccc gtgctgacag tttttctttc agctctgcca
     2161 ttcccggcga aatccacgta ttccactgcg tttcaaaggc ctgacgacgg gcgggaatgt
     2221 cccgttcttt cacggccctg taggtgcgga gaagagattc aatctgtttc tcgagtttcc
     2281 agaagcggag ttgtcttttg cggtattccg gttcagccca tgtcatcagg ggaagctctg
     2341 acaggatgga cgctaccgga cgggcttttc tgagtccggt catctctttt tcgagaatat
     2401 cccgctcttt caccagcgca ttcccctcac gtttgatgtc gtttgccttc ccgttcatcg
     2461 ccacgaactc cggtgtcatc tcccatgcgt tcccgcattc ctgcggcagt gtggcaatga
     2521 attcccgcag ggtatccgct gaggcattcg cggcgggaat ggtcagatta agggcttccg
     2581 ctgcacgacg tgcggcatcg ctgagttccc gtttccgcac gttctcctgt acctggatga
     2641 ctgccagcct tgtgcgggaa acctgtattt ccaggttaag gctgttaatc aggcggttct
     2701 gctcaccgcg ttctgtttcc atgccccgtt tttccatcgc acaggcagcc tttccgaggt
     2761 gaaggcccgg cgctttctcc agtccctgac gctcgtatga acgatggtct atctcttcct
     2821 ggtagccggc gttcgcaagc gctctgttcg catggtcagc ccatgatgcg cgccacgtct
     2881 cggcgagtgc ccggtcgttc cagtccctga cctttcctgc gaatcccgtt tccccgacag
     2941 ctctcgtggt cagcatgatg tgtgcatggg ggttggtccg gtccatatga tggaacgcca
     3001 catcggcaat catgccccga ctgacaaagt tttcccggac aaaagcgaga acggcctccc
     3061 gtgcggcctc gcgggaaatc tcacggggaa tggcgagttc aatctccctt gccagctggg
     3121 agttccggcg ctgttcggct ttctcgaccg cattccagag aacggaacgg tcaccacacc
     3181 aggacggtgc attcgcaggg gtgagaatga ccgcatcatc aacgccgcgt ttacgggtgt
     3241 aatcgtggat taatccggta cggtcatcgg gtatgacaga gccggaacgg taggcagcag
     3301 aagcaacggc actgtagccg ttttttcgcg aaatgatttt catgctgaga tgataaatcg
     3361 ccatttctgc cgtaatgcct ttttgccgtt ttctttcagc cccgcagggc gcacacaatc
     3421 gaaacgaagt gaagattgta taagtgcgca cttcgtgata tgccgtgcat tatgccagct
     3481 cagtttttaa actaccagtg acgagctaaa atgcgatttt tcaccgcgca aggagtcacg
     3541 aaatgagcag aacactcgaa cagaagattg ctgaagctga ggccagattg cagcgcctga
     3601 aggcgaagag ccggagcctg gacactgcgc aaaaagtcat tgtgggagca gccatgctgg
     3661 cgagggtacg gaggccggaa gaggcgcaac tgcgtgcgtt cctgctccag ttcctgcgaa
     3721 aggaagtcac aagacaggcc gatgtgaacc ggctacaacc actgattaac gagctggaga
     3781 agctaccaag accacctgcg aaaccgcaga acggataagc cccggcgcgt aagtgccaca
     3841 tgcaccaccg gacgcctttg cgcttcctcg cacattcgct cgctacgctc ggtcatgagg
     3901 ctgcggcgag cgctaccacc gcaatcacga ggaaaccagc gccattgctg ggcggaaccg
     3961 gaaaaaccgc aggaacgcca acagctcaaa aaagcgccga aaaggcgctg ttatctgata
     4021 aggctatttg tgcattgccc aattacggat cgtatttcga tgtacatcca gcatcgccgc
     4081 aatagctttc tgagaatatc cattctccag catacatagc gccatgaaac gcttgtcctc
     4141 gtaggcttcg cctttagcaa ggccaccttt ccggcctcga gcggcctgta cagcggaaaa
     4201 gccttccggt gagaattttc tgtgcgtgta tttc
//
