LOCUS       NZ_CP083714             2608 bp    DNA     circular CON 09-AUG-2023
DEFINITION  Enterobacter cloacae complex sp. ECL352 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP083714
VERSION     NZ_CP083714.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21399027
            Assembly: GCF_020149545.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter cloacae complex sp. ECL352
  ORGANISM  Enterobacter cloacae complex sp. ECL352
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Zhang,X.
  TITLE     Molecular characterisation of NDM-1-Producing Carbapenem-Resistant
            E. cloacae complex From a Three Tertiary Hospitals in
            Chongqing,China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Zhang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2021) Department of Microbiology, Yongchuan
            Hospital of Chongqing Medical University, Xuanhua Road, Yongchuan
            District, Chongqing 402106, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 550.0x
            Sequencing Technology             :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/07/2023 02:05:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,906
            CDSs (total)                      :: 4,788
            Genes (coding)                    :: 4,679
            CDSs (with protein)               :: 4,679
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 28 of 109
            Pseudo Genes (incomplete)         :: 80 of 109
            Pseudo Genes (internal stop)      :: 21 of 109
            Pseudo Genes (multiple problems)  :: 16 of 109
            Pseudo Genes (short protein)      :: 1 of 109
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083714.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Enterobacter cloacae complex sp. ECL352"
                     /mol_type="genomic DNA"
                     /strain="ECL352"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:2876028"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Yongchuan District, Chongqing"
                     /collection_date="2020-09-24"
     gene            13..666
                     /locus_tag="LBF07_RS24595"
                     /old_locus_tag="LBF07_24595"
     CDS             13..666
                     /locus_tag="LBF07_RS24595"
                     /old_locus_tag="LBF07_24595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_174784986.1"
                     /translation="MSFQLAIFFKQHITRPDQFFSSINDAAGNLFDRMPQIIPLPDEVP
                     PEIPRVAATNQAGTYSFNISLNRLDLTLNISDSPFKEQDGLSDFILKSKLIIKNIPNEL
                     DIIRLGMIGNYFEIERLPAMALAKKYSRKDLGNINEFNFRYNKISQEFGYSFNNVFAIS
                     NAEINTKGITSEGIFIQKDINNNPSGLPIKKDMLLDIISKKTKDLSTTNLEGLA"
                     /name="hypothetical protein"
     Typing          complement(1649..1733)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.5"
                     /coverage="96.0"
                     /evalue="2.54e-18"
     Typing          2003..2383
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.288"
                     /coverage="88.0"
                     /evalue="6.25e-171"
ORIGIN
        1 atggtacatg taatgagttt tcaactggct atatttttta aacagcatat aactaggcca
       61 gatcaattct tttccagcat caatgatgct gctggaaatc tattcgacag aatgccacaa
      121 attatccccc tcccagatga agtacctcct gagatacctc gcgtagcggc aacaaaccaa
      181 gcgggaacgt atagttttaa tatatcgcta aacaggttag atcttacctt aaatatttct
      241 gactcaccat tcaaagaaca agatggtcta agtgatttta tattaaaatc aaaattaatt
      301 ataaaaaaca tcccaaatga actagacatc attcgcttag gaatgatagg taattatttt
      361 gagattgaac gacttccagc aatggcccta gcaaaaaaat actctcgaaa agaccttgga
      421 aatataaatg agtttaactt ccgatacaat aagatctcac aagagtttgg gtatagcttt
      481 aataacgtat tcgctattag caatgcagaa ataaatacaa aaggaataac ttctgaaggg
      541 atttttatac aaaaagacat aaacaacaac ccttcagggt taccaataaa aaaagatatg
      601 cttttagata taatatctaa aaaaaccaag gatttatcta cgacaaactt agagggatta
      661 gcctaatgcc tccacaaagt cgatcatcat ctagcactgc ttttagcacg cccaccgcga
      721 actctggtag ctcatctaca ctacagatag atacagcgtg ggcctccttt gaaaaaatga
      781 tagaaaaaag gctagaggaa ataaagccca aaacaccggc gcaaatcaaa gctaacggtg
      841 atagcagaaa caaaacaata gtaatttctg cactagtcat aattctagca attatagtct
      901 tattcattgg ggcaatatat ataattgact cagtcaccgg taaagaattc tcatcctctc
      961 tcatgccagt gataacagca attatcagtg gagtttttgg atatctttct ggcgaaaaat
     1021 cttccaagta acatacatgc tgctattaaa atggcagcat gtatcaatta taacaacggt
     1081 aactagtaaa ttaataaaaa gtagcggtat gccaatagca gtgaatttac cataacatct
     1141 gttggccgca ccgtctcaga cgccctcagc gcgtttctgc ggtgggatgc ctgtttcctg
     1201 cacttcccta tacctatatc gtgaaaaaac gcgcctgatg atttctgcgc agctgcatgg
     1261 ctatgcatga gagtgactgg cgcgcagttt cacaccagat gtgccggaaa aggactgttt
     1321 caggcagttt tcttccgtgg ttcgtagaac cacagcaggt ttcaaagggg aaccctttgg
     1381 caccgcgcat gtatcaccgc gtgtatacat cgccgtcgtg cctgatccgt agaaagtaaa
     1441 actcaagaca ggagcagcac acacacttta aacacacctc aaaatgccgc cacacacatt
     1501 tcaaacacac attaaacaca cccgaacagc cgataaacac actttagaca cacattaaac
     1561 acattcccga agccacatag acagcatgaa gacacggaga tgaagcggtg aacgggcacg
     1621 caatttattg cggggtcgtg agccgctggc agggtgtcgg ggcggcaagc cctgacaaaa
     1681 ggcatttgtg gtgccgcgtg tgcgcggtat tacaaatgca catcctgtcc ggatgttttg
     1741 caacactggc aaaccggctg tggccacaaa acatgtcctg tccgctgcgt taacttttgt
     1801 aatccagaaa cgtcagagga cgtcactttg cggcgttagc cctatcctgc atcgtattaa
     1861 aaaatgcagc tacggtgtgt acggtgccta aagtgagccc gaagatattc cgcttcctcg
     1921 ctcactaact cgctacgctc ggtcgttcgg ctgcggcgag cggagggaac ggagacatta
     1981 agacacaggc aatgagatag gatggagagg caacaaagaa ggccgcggcg ctgccggttt
     2041 tccataggct ccgcccccct gacaagcatc acagaatcag acgctcaaat cagtggtggc
     2101 gaaacccgac aggactataa agatcccagg cgtttccccc tggtagctcc ctcgcgcgct
     2161 ctcctgttcc tgccattcgg tttaccggtg tcattccgct gttatggccg cgtttatctc
     2221 attccacgcc tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcgc
     2281 gaaccccccg ttcagcccga ctgctgcgtc ttatccggta actatcatct tgagtccaac
     2341 ccggaaagac acgacaaaac gccattggca gcagccattg gtaatggatt agaggagttg
     2401 agtcttgaag ttctttgcca gttaaggcta aactgaaagg acaagttttg gtgactgcgc
     2461 tccctctaag ccagttacct cggttagcca gatttactag gtctttctaa cctttaaaaa
     2521 accgcctgcc agggcggttt ttttcttcga aagaagatta cctttcgcct tatactccag
     2581 tcaagaaact aataaaaatg gagctaag
//
