LOCUS       NZ_CP083084             6178 bp    DNA     circular CON 07-JUN-2024
DEFINITION  Klebsiella pneumoniae strain 0113070356 plasmid p3-0113070356,
            complete sequence.
ACCESSION   NZ_CP083084
VERSION     NZ_CP083084.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21016541
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 6178)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     A collection of hybrid assemblies of carbapenemase-producing
            Klebsiella pneumoniae clinical isolates from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6178)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. 0.4.8
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 357.4373x
            Sequencing Technology :: Illumina NovaSeq and Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_021288825.1-RS_2024_06_07
            Annotation Date              :: 06/07/2024 01:34:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 8
            CDSs (total)                 :: 8
            Genes (coding)               :: 8
            CDSs (with protein)          :: 8
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083084.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6178
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0113070356"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3-0113070356"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.188053 N 6.143417 E"
                     /collection_date="2020"
                     /collected_by="Dianalabs, Rue de la Colline 6, 1205 Geneva,
                     Switzerland"
     gene            join(6011..6178,1..1554)
                     /locus_tag="K9F38_RS00005"
                     /old_locus_tag="K9F38_27185"
     CDS             join(6011..6178,1..1554)
                     /locus_tag="K9F38_RS00005"
                     /old_locus_tag="K9F38_27185"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_180258613.1"
                     /translation="MLSEERLSAIRAKVNRAQSSTNKKSVTLSSVSENGSRITERKKES
                     FNVANSFIIRGKIEENETLTKRGERSLNCAQQRYIVVVNGKAHTVFTHRCRSRHCANCQ
                     RIRAFVWQKRFEEILPRLGQEHKNAKYLFVTFTVKNPKLKNLHTVLLCMTRAFAKMFRR
                     DAFKKHFAGCIRSTEITRGFSGSDEAHPHFHALVVALPSYFKDENFKDTSVWAENWGEC
                     LKEEYEKAGLEYNEEDYVDGLPRIDVRKAKYDTGKKKKNGEKILKDITSKNISETGEKI
                     INYVLKYTVKGDDLLRGGRADGWFWEFDKQIKGIRVIASTGTVKKLLAEQEKEKFDYYK
                     EQAKIEELLKEDENFKADKAVFSKQNENYDYYLENKKDRYQYIIEAIEAKAYNYQCYYK
                     SLLSDHLLAFRSGIDGIIENFRKINKTKTREDFEVLEAAEQELVKIQCERIERLQFICD
                     ALVRVGLYKKMSDFVYMNIHTNEKTVIVKNNIVDILKAAEEKLLNDFKQSFMRLESAKT
                     QDVFNAIVDRVNEKSALIKLVRNEILAAGAYAYDADNMEYIDLETNERLEVIATIE"
                     /name="protein rep"
     gene            complement(1571..2761)
                     /gene="mobQ"
                     /locus_tag="K9F38_RS00010"
                     /old_locus_tag="K9F38_27190"
     CDS             complement(1571..2761)
                     /gene="mobQ"
                     /locus_tag="K9F38_RS00010"
                     /old_locus_tag="K9F38_27190"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_233109062.1"
                     /translation="MLSILGEKTMAIFHMSAQRISRSKGHSSVAAAAYRHGEKMTDEHT
                     GEIHDYSKKKGVSDSVVLIPEGADKRFLKPEYLFNTIEKHEKRKDAQLALEVNISLPTE
                     MTDEQKKALAIDFCNENFVKKGMIADIAFHKLDSDNPHFHVMLTTRKLTPDGAGFGQKV
                     REWNGKEQLQEWRKSWADTANEHLQAAGIDARIDHRSLKDQKAELDALPSPTIQQQAQA
                     ISLDRPPTIHRGHSGNRERLERFDALQEVKVSQEAKALNYIEQNTLKPSPPAPASSPTA
                     SSMDAKQGDKKAASTGSAAATVSGSNINLADETTDKNLHLTEAQREELEDAENKEAAAK
                     KKAYLSSGAGVPAFAQETKIQSKSEFKNKFSKMKNAINKEDEDEENDYKINRPRLK"
                     /name="mobQ"
     gene            3073..3462
                     /locus_tag="K9F38_RS00015"
                     /old_locus_tag="K9F38_27195"
     CDS             3073..3462
                     /locus_tag="K9F38_RS00015"
                     /old_locus_tag="K9F38_27195"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_231542860.1"
                     /translation="MKYYKHDSYIRRKYTREQIDRFFEISENDFTTYNFEKFFDDVVID
                     ILNKREENKDRSFAGYVYFMLDKFNIKNKRIQSYEVYFMTKKQIEKNLKDFEYEVSKSY
                     VRKWIYRWIYYYAVFVKSEKKEIKK"
                     /name="hypothetical protein"
     gene            3459..3773
                     /locus_tag="K9F38_RS00020"
                     /old_locus_tag="K9F38_27200"
     CDS             3459..3773
                     /locus_tag="K9F38_RS00020"
                     /old_locus_tag="K9F38_27200"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_106106981.1"
                     /translation="MIGNNNDDYDEYLFDDTVEVSLSCEDDEDFLKDQEQEKKSVLQKM
                     IEYKDESTLLGSLYEISGVFGFTVVLLLGFILTLPFLLVISVVAFFITMKEKRGSKNGV
                     "
                     /name="hypothetical protein"
     gene            3763..4104
                     /locus_tag="K9F38_RS00025"
                     /old_locus_tag="K9F38_27205"
     CDS             3763..4104
                     /locus_tag="K9F38_RS00025"
                     /old_locus_tag="K9F38_27205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_040219661.1"
                     /translation="MAFNIEKYNKVKKELEQKANLLNRMEQEMKAEERKKDAARKIKVG
                     AELIRIVRENNIETLDFANDISLLVGALTNNLILKRIHDQRDFLRNEGDKRLNEWKLKN
                     NKKRSKTNE"
                     /name="hypothetical protein"
     gene            4202..4510
                     /locus_tag="K9F38_RS00030"
                     /old_locus_tag="K9F38_27210"
     CDS             4202..4510
                     /locus_tag="K9F38_RS00030"
                     /old_locus_tag="K9F38_27210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_233109060.1"
                     /translation="MIDFDNDMQEMKRKKDFHPLMLLNKHDRASLDLEILNIIRISLAG
                     KMLNIQSDELLNADLYFQKQDELDIGEDARIIAYVFRDFVKQRIEAAIKTIEEDKNI"
                     /name="hypothetical protein"
     gene            4507..4752
                     /locus_tag="K9F38_RS00035"
                     /old_locus_tag="K9F38_27215"
     CDS             4507..4752
                     /locus_tag="K9F38_RS00035"
                     /old_locus_tag="K9F38_27215"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_040219657.1"
                     /translation="MNIAAFLGFVAKAKPDVDDGGGSLIPAAMGFFIVAFLVAIIASVV
                     SSAFRSAKNSADVSINNAKKYHVALIKEQYRRKGGG"
                     /name="hypothetical protein"
     gene            4805..5209
                     /locus_tag="K9F38_RS00040"
                     /old_locus_tag="K9F38_27220"
     CDS             4805..5209
                     /locus_tag="K9F38_RS00040"
                     /old_locus_tag="K9F38_27220"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_233109061.1"
                     /translation="MLSVIYAAEIYQWQHYNAYKFKRWLKSGSIKKDEEQEKIKREVKK
                     MTIDNILRLLKKYKIDFDANELVKNDFNIKMKYYKLILAEKERLKENKRLDEAVKQKIK
                     IETDTFDAEKFQKEAEERFKAFMKNRNKNK"
                     /name="hypothetical protein"
ORIGIN
        1 aagattgaag aaaatgaaac gctaacaaaa cgcggcgaac gttctttgaa ctgcgctcaa
       61 cagcgttata ttgtagttgt caacggtaaa gcacatactg tatttactca ccgctgccgc
      121 tctcgtcatt gcgcaaactg ccaacgtata cgcgcgtttg tatggcaaaa gagatttgaa
      181 gaaatattgc cgcgtttagg acaagaacat aaaaacgcaa aatatttatt tgtgacattt
      241 acagttaaaa atccaaaact caaaaactta catactgttt tattatgtat gacgcgagca
      301 tttgcgaaaa tgtttcgtcg tgatgcgttc aaaaaacatt ttgccggatg tattagatct
      361 acagaaatca ctcgcggttt ctccggttct gatgaagcgc acccacactt tcatgcgctt
      421 gtcgtcgcgc ttccatcgta tttcaaagat gaaaacttta aggataccag cgtgtgggct
      481 gaaaactggg gcgagtgctt aaaagaagaa tacgaaaaag caggattaga atataacgaa
      541 gaagattatg tagatggatt gccgcgcatt gatgttagaa aagctaaata tgacactgga
      601 aaaaagaaaa aaaacggtga aaagatttta aaagatatta cttctaaaaa tatttcagaa
      661 acaggcgaga aaataataaa ctacgtctta aaatatacag taaaaggcga tgatctacta
      721 cgtggcggca gagctgacgg gtggttttgg gagttcgaca agcaaataaa gggaatacgt
      781 gttattgctt caactggaac agtaaaaaaa ttattagctg aacaagaaaa agagaagttt
      841 gattattata aagagcaagc aaagattgaa gaactattaa aagaagatga aaactttaaa
      901 gctgataaag ctgtattttc aaagcaaaat gagaactatg attattattt agaaaataaa
      961 aaagatcgct atcaatatat tatagaagcg attgaggcta aagcgtataa ctatcaatgc
     1021 tattataaat cgttattatc tgaccatctt ttagctttta gatctggcat cgatggcatc
     1081 attgaaaact ttcgcaaaat aaataaaaca aaaacaagag aagattttga agtattagaa
     1141 gcggcagaac aagagctggt aaaaatacaa tgcgaaagaa tagagcgctt gcagtttatt
     1201 tgtgatgcgc ttgtaagagt gggtttatat aagaagatgt ctgattttgt ttatatgaat
     1261 attcatacaa atgaaaaaac tgttatcgta aaaaataaca ttgtcgatat tttgaaagca
     1321 gcagaagaaa aactcttgaa cgattttaag caaagtttca tgagacttga aagcgcgaaa
     1381 acgcaagatg tatttaatgc tattgtagat agagtaaatg aaaaatcagc actgattaaa
     1441 cttgtaagaa atgagatttt agccgctggc gcgtatgctt atgatgctga taatatggaa
     1501 tatatagatc ttgaaactaa cgagcgttta gaagttatag cgactataga ataatagctc
     1561 ttgcgagcta ttattttaaa cgtggtctat ttattttgta gtcgttttct tcgtcttcat
     1621 cctctttatt aatcgcgttt ttcatcttgc taaacttatt tttaaactca cttttagact
     1681 gtattttagt ttcttgagca aaagcaggaa cgccagcgcc gctgctgagg tatgcttttt
     1741 tcttcgctgc cgcttcttta ttttctgcgt cttctaactc ttcgcgctgc gcttctgtta
     1801 ggtgtagatt tttgtctgtt gtttcatctg cgagattgat attagatcct gaaactgtag
     1861 ccgctgctga acctgttgaa gctgcttttt tgtctccctg tttagcgtcc atagaagacg
     1921 cggtagggga ggaagcagga gccggaggcg agggcttaag cgtgttctgt tcaatgtagt
     1981 taagtgcttt agcctcttgt gacactttca cttcttgaag cgcgtcaaag cgttctaaac
     2041 gctccctgtt gccgctgtgt cccctgtgta tggtcggcgg tctgtctaag ctgatagcct
     2101 gcgcctgttg ctggatagtg ggggagggga gggcgtcaag ctcggccttt tggtctttca
     2161 gtgaacggtg atcaatacgc gcatcgatgc cagcggcctg caggtgctcg ttcgctgtat
     2221 ccgcccagct cttgcgccac tcctgcagct gctctttgcc gttccattct ctgacttttt
     2281 gcccgaaccc tgcgccgtct ggtgtcagtt ttcttgtcgt tagcattacg tgaaaatgtg
     2341 ggttgtcgct atcgagctta tgaaaagcta tatccgcaat cattcctttt ttaacaaagt
     2401 tttcattgca gaaatctatc gccagcgcct ttttttgttc gtctgtcatt tctgttggga
     2461 gcgaaatatt tacttcgagt gcgagttgcg catcttttcg tttttcatgt ttttcgatgg
     2521 tgttaaataa atattcaggt tttaaaaatc ttttatctgc cccctctggt attaatacca
     2581 cgctgtcaga aactcccttt tttttgctgt agtcgtggat ctctcctgta tgctcatctg
     2641 tcatcttttc accgtggcga tacgctgccg cagctacgct actatgccct tttgagcggc
     2701 ttattctttg ggcgctcata tgaaatattg ccattgtttt ttctcctaat attgaaagca
     2761 catatattaa aaaataagta aaactatttt tgcattatca aaaatcaata atgtaatatg
     2821 agcataaagc gagtattcat tattattttt tgattgcagt aaatccccat ttatggggcg
     2881 cacacattcg aagaatgtat aagtgcgcta ttgtagtttt tagcaaaact aaaatagccg
     2941 ctacacgtta accttttgtc tataaaatcg cgctctgaaa ataaaaatac atatgtcgcg
     3001 ctttacttga gtaaataaat atattactta aatatatata acagaaaaca caaaataaaa
     3061 aagaggtgaa aaatgaaata ttacaagcac gattcatata taagaagaaa atacacaaga
     3121 gagcaaatag atagattttt tgaaataagt gaaaatgatt ttactacata taactttgaa
     3181 aagttctttg atgatgttgt tattgatata ttaaataaac gcgaagagaa taaagataga
     3241 tcttttgcgg ggtatgtata ttttatgtta gataagttta atataaaaaa taaacgcatt
     3301 caaagttatg aagtgtattt tatgactaaa aaacagattg agaaaaactt gaaagacttt
     3361 gaatatgaag tttctaaaag ctatgtgaga aagtggattt accgctggat ttattactat
     3421 gccgtttttg tgaagagtga aaaaaaggaa ataaaaaaat gatagggaat aataacgatg
     3481 attacgacga atatttattt gatgacactg tagaagtttc tttgagttgt gaagatgatg
     3541 aagatttttt aaaagatcag gagcaagaaa aaaaatctgt tttacagaaa atgattgagt
     3601 ataaagatga aagtacgctt ttaggtagtt tgtacgaaat atccggcgtg tttggtttta
     3661 ctgttgtttt attgttaggg tttattctaa cccttccatt tttattagtg attagtgttg
     3721 ttgcgttttt tattacaatg aaagaaaaga ggggttcaaa aaatggcgtt taatatagag
     3781 aaatacaata aagtaaaaaa agagcttgag caaaaagcaa acttattgaa tagaatggag
     3841 caagaaatga aagcagagga aagaaaaaaa gatgctgcgc gtaaaataaa agttggcgct
     3901 gaactaataa gaatagttag agaaaataat atagagacat tagattttgc gaatgatatt
     3961 tctttattag tgggggcttt aactaataat ctaatattga aaagaataca cgatcagcgc
     4021 gatttcttga gaaatgaagg cgataaaaga cttaacgagt ggaagctaaa aaacaataaa
     4081 aaaaggagta agacgaatga ataacataag acctaacccg aaccctcgaa aggagggaac
     4141 ggcggacatg atgaaccgcc ttaacttcta tgatacgtct tttacttgct tacatttttt
     4201 aatgatagat tttgataatg acatgcaaga aatgaaaaga aaaaaagatt ttcatccttt
     4261 aatgcttttg aataaacacg atagagcgag tttagattta gagatattaa atattattag
     4321 aatatcactt gctggcaaaa tgttaaatat tcaaagtgat gagctattaa acgctgattt
     4381 atattttcaa aaacaagacg agttagatat tggcgaggat gcaagaataa tagcttatgt
     4441 atttagagac tttgtaaaac aaagaataga agcagctatt aaaactattg aagaggataa
     4501 aaatatatga atatcgcagc ctttttgggt tttgtagcaa aagcaaaacc agatgttgat
     4561 gatggcggag ggagtctcat tcccgctgct atggggtttt ttattgttgc ttttttggtt
     4621 gctattattg cgtcagttgt ttcaagtgct tttcgttctg ctaaaaactc ggcagacgtg
     4681 agtataaata atgcaaaaaa atatcacgta gccttgataa aagagcagta cagaaggaaa
     4741 gggggcgggt aatatgtatt atttaatatg tagtctattt ataactatat tttttattgt
     4801 ttgtatgctt tcagttattt acgctgctga gatctatcag tggcagcatt acaacgctta
     4861 caagtttaaa agatggctaa aaagtggaag cataaaaaaa gatgaggaac aagaaaaaat
     4921 aaaaagggaa gtaaagaaaa tgactataga taatatttta agactcctca agaaatacaa
     4981 aatagatttt gacgctaacg agttagtgaa aaatgatttt aatattaaaa tgaaatatta
     5041 caaacttata ttagcagaaa aagaaagatt aaaagaaaat aaaagattag atgaagcagt
     5101 aaaacagaaa ataaaaatag aaactgatac atttgacgct gaaaagtttc agaaagaagc
     5161 agaagaacga tttaaagcat ttatgaaaaa tcgtaataaa aataaatagc ctcgatctca
     5221 acttgtcaaa aaaaattaag gagggtccgc cgaaggtgga aaccttcatt tttattgaca
     5281 actccccgat aaaaaaacac tttcaatggt gaaaggagag caaggcgagc ctttcgcctg
     5341 ttaagccgcc tttacgccct tctaagccct ttaccgtccc tctgtggtaa tctctggctg
     5401 ctggcctcct gtcgttccgg gtgggtttgt taagtggtgg gagtgccagc tcctgcagtt
     5461 gcgtccgggg gcatttgacg ccccgccctt gccctttggt ttttgggttt ggggagtgag
     5521 cgaagcgagt gacctacttc ccttgtttaa taagaaacaa atcgcatcga ttttttcggg
     5581 taaaaaatgc ggcaaagccg cgtcctgtct ggttttgtct gtttttaggg tctgaaaaaa
     5641 agtggggggg gcgtatattt tttaaccact cattaccccc ctgtttttgg gatgtcgcca
     5701 ccaataaccg cccttttacc ccctgttttt gggatgtgat ctgcaaaagg tttcggataa
     5761 gcgggcgagg atgggacgac accacacgaa accgccattt tacctcggtt ttttgggatg
     5821 aggtaaagcg tagcggcgga aaatgggcgc aaaaatggga cggggctgca cttttgggcg
     5881 gttttaggtg ttcgggatgg gcggcgtagg tgttcgattt gtatgcaaag cgggtgtaag
     5941 tgattgacag aaataaaaaa ccccttagag ttgaacttgc gacggttcta tacaataagg
     6001 ggttttttat atgctttcag aagaaagatt aagcgcaata cgcgcgaaag tcaatagagc
     6061 gcaaagctca acaaataaaa aaagcgtaac gctttcaagc gtttcagaaa acggatcacg
     6121 cattactgag cgtaaaaaag aaagtttcaa cgtagcgaat agtttcatta ttcgcggc
//
