LOCUS       NZ_CP083080             2101 bp    DNA     circular CON 10-FEB-2024
DEFINITION  Klebsiella pneumoniae strain 0113481141 plasmid p5-0113481141,
            complete sequence.
ACCESSION   NZ_CP083080
VERSION     NZ_CP083080.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21016545
            Assembly: GCF_021138155.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     A collection of hybrid assemblies of carbapenemase-producing
            Klebsiella pneumoniae clinical isolates from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 289.8651x
            Sequencing Technology :: Illumina NovaSeq and Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/10/2024 03:12:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,780
            CDSs (total)                      :: 5,658
            Genes (coding)                    :: 5,526
            CDSs (with protein)               :: 5,526
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 57 of 132
            Pseudo Genes (incomplete)         :: 77 of 132
            Pseudo Genes (internal stop)      :: 22 of 132
            Pseudo Genes (multiple problems)  :: 20 of 132
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083080.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0113481141"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p5-0113481141"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.188053 N 6.143417 E"
                     /collection_date="2020"
                     /collected_by="Dianalabs, Rue de la Colline 6, 1205 Geneva,
                     Switzerland"
     gene            join(1203..2101,1..67)
                     /locus_tag="K9F42_RS28830"
                     /old_locus_tag="K9F42_28725"
     CDS             join(1203..2101,1..67)
                     /locus_tag="K9F42_RS28830"
                     /old_locus_tag="K9F42_28725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            71..337
                     /locus_tag="K9F42_RS28835"
                     /old_locus_tag="K9F42_28730"
     CDS             71..337
                     /locus_tag="K9F42_RS28835"
                     /old_locus_tag="K9F42_28730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1597..1828
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 ggcgtttgtc tgggattcag gtaaacggcg ttacaaacgc gcccctgaga aggataaatc
       61 ggattaacgt atgaatatta atattgaata cctgaatgga aataagacta ttggtttatt
      121 ttttttaaga agtgaagcgg tgattcctga caggtttaaa aaccttattt tgcttattga
      181 tggattaagt tttggcacat ttggttttca tccgcacgaa ggttttgagg atgaattaat
      241 tttatatatt cagaaaacaa acgagagggt aaaaactctt tttgtgaaaa tagatttaaa
      301 cggtatcaag tttggatttt taagaacgca ttcttagttc tggaaaagag ccagcggcag
      361 gctgaggtga taggtacgag attgcatgca atctctagtg ctctgtctat cctgcattat
      421 cctcagcatt atcctcagca ttatcctcag ccttgccaac tcgacaccaa tgcaggatag
      481 acaatccgat gtcaaatgtt aacactctgc gagtggtaca ttttccccgg attatcgtcc
      541 tgagcctgcc gctggctctc tttctaccgc ctcgctttgc tcgttgctca acgcctcaca
      601 gacacggatt aaaatccgca tccgttcacc gttttttaaa gtccgttaaa agcatgatgc
      661 catctccgag agttaatctc gtcaaatgct aaatcgtggg ggtccccttt ggggttccga
      721 tttagtgatt gacgacacca ccgattaaaa aacttatgcg gggtggatgg tttcacgaag
      781 tgaggccatc cacctgtaag acagggtttt gtttttattc cctgttttgg tgatcgggtg
      841 tgtggaaaag gttggggtaa gccgttcggg ggtgcttgtt ttggggggtt aaaattgtgg
      901 ttattttttg cgcaattctc gcgcgtgatc cttgtattta tacttaaggg ataaatggcg
      961 gatatgaaat agtggtttag cccagtaatg acgaggcttt gagtgggttt tgacaggtca
     1021 aagaaaatgg agcagaattg aggcgttttt aatcggcgtt ggggagtgcg tcaacactcc
     1081 ccaacatttc gaatgtgtca cctcagcggc aaactctggt gacatgtact ggctcgcaat
     1141 gcacaggtac gtgatgaata taccacatca aatcacagcc tgcccagatc ggagcaggct
     1201 taatgtcaga agataaattc ctttcggact acagcccccg tgatgcagtt tgggataccc
     1261 agcgcacgct taccgattct gtcgggggta tctaccagac tgctgctgaa ttcgagcgct
     1321 atgcactccg tatggcctcc tgtagcggtt tgttacgttt tggttggtct accatcatgg
     1381 aaaccggaga aacgcgccta cggcttcgta gtgcgcaatt ttgccgtgtc cgtcattgcc
     1441 ctgtctgcca gtggagaaga accctcatgt ggcaagcccg tttttatcag gctctaccga
     1501 aaatcgttgt ggattacccg tcttcccgat ggttgtttct gacgttaact gtcaggaact
     1561 gcgagatagg tgaacttgga acagtcctta cagcaatgaa tgcggcgttt aagcgaatgg
     1621 aaaagcgaaa ggagctatca cctgttcagg ggtggatcag ggctacggag gtgacgcgag
     1681 gtaaggatgg cagcgcacat ccgcattttc actgtctgct gatggtgcaa ccttcttggt
     1741 ttaaagggaa gaactacgtt aagcacgaac gttgggtaga actctggcgc gattgcttgc
     1801 gggtgaacta tgagccgaat atcgatattc gggcagtaaa aactaagaca ggtgaggttg
     1861 tggccaacgt tgccgagcaa ctgcaaagcg cggttgctga aacgctgaaa tactccgtta
     1921 aaccggaaga tatggcaaac gatcctgagt ggtttcttga gctgacgcgg cagcttcaca
     1981 agcgccgttt tatctcgacc ggtggggcgc taaaaaacgt cctccagttg gatcgagaaa
     2041 ccaatgagga tcttgtcatt gccgacgatg taggggatgg cactgatgac gggaagcgga
     2101 c
//
