LOCUS       NZ_CP083042             2299 bp    DNA     circular CON 10-FEB-2024
DEFINITION  Klebsiella pneumoniae strain 4906.28 plasmid p6-4906.28, complete
            sequence.
ACCESSION   NZ_CP083042
VERSION     NZ_CP083042.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21016535
            Assembly: GCF_021137855.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     A collection of hybrid assemblies of carbapenemase-producing
            Klebsiella pneumoniae clinical isolates from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 359.2643x
            Sequencing Technology :: Illumina NovaSeq and Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/10/2024 03:10:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,759
            CDSs (total)                      :: 5,635
            Genes (coding)                    :: 5,500
            CDSs (with protein)               :: 5,500
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 54 of 135
            Pseudo Genes (incomplete)         :: 82 of 135
            Pseudo Genes (internal stop)      :: 17 of 135
            Pseudo Genes (multiple problems)  :: 14 of 135
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083042.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="4906.28"
                     /isolation_source="Tracheobronchial"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p6-4906.28"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.947928 N 7.422277 E"
                     /collection_date="2013"
                     /collected_by="Institute for Infectious Diseases (IFIK),
                     University of Bern, Friedbuehlstrasse 51, 3001 Bern,
                     Switzerland"
     gene            complement(769..954)
                     /locus_tag="K9F35_RS28695"
                     /old_locus_tag="K9F35_28645"
     CDS             complement(769..954)
                     /locus_tag="K9F35_RS28695"
                     /old_locus_tag="K9F35_28645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin VbhA family protein"
                     /protein_id="WP_031602372.1"
                     /translation="MTKQQRIDGFRKAEASLKLEGMDPSGTPFYESVKARIISGEITYE
                     QGKAEILSHHKARAEV"
                     /name="antitoxin VbhA family protein"
     gene            complement(1193..2188)
                     /locus_tag="K9F35_RS28700"
                     /old_locus_tag="K9F35_28650"
     CDS             complement(1193..2188)
                     /locus_tag="K9F35_RS28700"
                     /old_locus_tag="K9F35_28650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_069067450.1"
                     /translation="MQNPKLQNLTDYSPDDKPWDAHKSQSDDVGGIYLRAAEFESYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDGRWMFLTLTVRNCAIEDLGETLTAMNAAFQRMKVRKEFKPVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          1283..1473
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 gttggtagca cttgcagggg tttctcatat catcgtgtca gtaagtaagg tcttgggaac
       61 caccccaagt aatcaaaaat tagttctcag acacgatcac ctgtcagaaa tcatactcac
      121 aaaaccattt tcgagcaaat tggctctcag gccttgcggc acaagggctg gaagcgaatt
      181 tcaatcctag agttatccct taagtataaa tacaaggatt tcgccccttt cagggtcgaa
      241 aaaccaaccc ccaaaagcag cattcaagca ctcaaacact caagcattcg cacgctcaaa
      301 aattaagcaa accacgttaa atcgcccccc ccctgagaaa tgtcagattg agacaaacgt
      361 gcagtattac attcactgca cgcggctgtt tccgttgcaa aatgcaacaa gagtccacta
      421 ttaaacagag tggaccccga ttccgaacgg cgtgtgcctc ctcgcagagc tgcgggggca
      481 atccccgttc ctcatcgcgg ccgcacgact ttaccccgca tactcatgat gccggattta
      541 aacgaataag gcataccgag caaaacgaaa atacccccac ggcatcacct gtagggcagg
      601 gcttacgcac ctaccccaca ggcaacgcct cgaagggggt aaaaagcggc tttacagggt
      661 gatggctcac tacgtgaacc atcacccatc acaagggtat gaggggtgca gtcgtacaac
      721 cactaaatcg gaaccctaaa gggatccccc gatttagaag ttgacgattc aaacttctgc
      781 gcgggctttg tggtgggaaa gaatctcagc tttgccctgt tcgtaggtaa tttcaccgga
      841 gatgattcgg gcttttaccg actcataaaa gggagttcca gaaggatcca taccctccag
      901 ttttaacgat gcttccgctt tacggaatcc gtcgatcctt tgctgttttg tcatgaggtt
      961 tcctttgagc agaatgcgaa taaggcaggc gtaaagttgg ctaactttac atgtcctgcc
     1021 cgaactgtgc tgttggttat acgtgtatac gtgtatgcat gcagagtgga aatctcaggg
     1081 aaacccgaag gaatgccaaa ggaaatctgt gtaccggaca agatgtgttt ttggagtacc
     1141 gccacacgca gcggcatcca aaaacaacat ggtcagggca ggccccgaca ccctaatcag
     1201 gatctgattt aaacttatcg cgctcaggca agcggacgta ttttcttggc gtcgaatccc
     1261 agccaaaggc gaggcgtgaa ccatcgtctt caccatcgga aatatcatcc ccgatcacca
     1321 tgtcttgatc cgtttcctgt tccagtttca gaacgtcctt aagcgcgcca ccggtcgcaa
     1381 caaagcggcg tttatgcgtc tgccgggtca gctctaagaa ccagtccggg tcggcaacca
     1441 tatcagccgg ctttgtcgaa tatttcaggg tttcagcaac ggcaccgcgc accagttcgg
     1501 cagttgcaca tgccagcgtt tggccatctt taggcttacg gggtttcact gcccgaacat
     1561 caacattagg atcgtaatca acgcgcaggc agtcacgcca gagttcaacc cagcggtagt
     1621 gcttaacgta gtcatgaccg ttcagcatcc caggaggaac catcatcagg gtgtgaaagt
     1681 gggggtgcgc agaaccatct cggccgcggg taacttctgt ggtgcgaatc catccctgta
     1741 cgggtttaaa ttccttccgc accttcattc gctggaatgc cgcattcatg gcggtaagtg
     1801 tttctccgag atcttcaatg gcgcagttac gaacggtgag cgtcagaaac atccatcgcc
     1861 catcagggta atcagcgaca attttcggca gagactgata aaaacgggct tgccacatca
     1921 gggagcgcct ccactggcag acagggcagt gacgaacgcg gcagaaatgc gcctcacgga
     1981 gccgtaaacg cgtttctccg gtgtctttaa gggtagacca gccaaaacgc aggaggccgc
     2041 cacaatcgcg catgcgggct gcataagact caaattcagc agcacgcaga tagataccgc
     2101 caacatcatc agattgtgac ttatgagcat cccacggctt atcgtcgggg ctgtagtcgg
     2161 tgaggttctg tagcttaggg ttttgcatag cacctgctcc aatatgggca ggcgctggaa
     2221 gggtgtgtta tcatttccgt atcacctgtt gagagtcgat ttcaaaccgt atttagccag
     2281 gtgatcgcgc ccctgaagt
//
