LOCUS       NZ_CP083024             4052 bp    DNA     circular CON 10-FEB-2024
DEFINITION  Klebsiella pneumoniae strain 6611.48 plasmid p3-6611.48, complete
            sequence.
ACCESSION   NZ_CP083024
VERSION     NZ_CP083024.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21016525
            Assembly: GCF_021137795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     A collection of hybrid assemblies of carbapenemase-producing
            Klebsiella pneumoniae clinical isolates from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 229.2595x
            Sequencing Technology :: Illumina NovaSeq and Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/10/2024 03:03:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,473
            CDSs (total)                      :: 5,352
            Genes (coding)                    :: 5,211
            CDSs (with protein)               :: 5,211
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 53 of 141
            Pseudo Genes (incomplete)         :: 79 of 141
            Pseudo Genes (internal stop)      :: 30 of 141
            Pseudo Genes (multiple problems)  :: 16 of 141
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP083024.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="6611.48"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3-6611.48"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.947928 N 7.422277 E"
                     /collection_date="2017"
                     /collected_by="Institute for Infectious Diseases (IFIK),
                     University of Bern, Friedbuehlstrasse 51, 3001 Bern,
                     Switzerland"
     gene            complement(206..547)
                     /locus_tag="K9F27_RS27250"
                     /old_locus_tag="K9F27_27220"
     CDS             complement(206..547)
                     /locus_tag="K9F27_RS27250"
                     /old_locus_tag="K9F27_27220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_057172823.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1913..2371
                     /locus_tag="K9F27_RS27255"
                     /old_locus_tag="K9F27_27225"
     CDS             1913..2371
                     /locus_tag="K9F27_RS27255"
                     /old_locus_tag="K9F27_27225"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(2879..3091)
                     /locus_tag="K9F27_RS27260"
                     /old_locus_tag="K9F27_27230"
     CDS             complement(2879..3091)
                     /locus_tag="K9F27_RS27260"
                     /old_locus_tag="K9F27_27230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3095..3580)
                     /locus_tag="K9F27_RS27265"
                     /old_locus_tag="K9F27_27235"
     CDS             complement(3095..3580)
                     /locus_tag="K9F27_RS27265"
                     /old_locus_tag="K9F27_27235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     Typing          complement(635..814)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          791..1277
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(210..526)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="89.72"
                     /coverage="100.0"
                     /evalue="8.17e-57"
     Typing          complement(2764..4052)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.907"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctgctcccgc tgcccgggca gcagttcagc ctccgcgaac gacagcacgc cggaggtgta
       61 ctttttcgca tacggcgagg catcgataag ctcccggact tcctccggtt ttccctgcag
      121 cacggtcgcc ccctcgcgct gccggtcttt tcccagcagg taatccaccg gaccggcacc
      181 accaccgcgc ccccggggat gaaatttaac gatcatcatc cccccctttt tccagcaccg
      241 catgccgcag ccgctccagt cccgcgtcta ttgccatcag ggcggccaca atctgcaccc
      301 gatcatgacc ggcaccaacg gcattcactt tccgggcgat ctggttcagg ttgttaccca
      361 taccggcaag ctggcgcagc agcgccggcg atattgacgg cagtctgcag gcacgcgccg
      421 gcttctcatc gaggcaggac tgacgcatcc acgccgccag ctgcctgccg tcgcaccgct
      481 cgagcagccg ccggtgttcg tcttccgtca cccacatcgt gagcatcttg ttgcgtttgt
      541 ctgccagagt agcctcctga taacaccggg acgggcggga aatgtttccc ggtcggcacg
      601 gtgttggaca agccgcaggc gcgtcagtgg cttttagcgg gtttcggggc gcagccctga
      661 accagtcacg tagcgctagc ggagtgtata ctggctaaat atgttacggc ggagtggtaa
      721 tgtatgaaag tgcttcatgt gggaagggga aaatgtggct gacgggcgta agtgcaacat
      781 gctggtaaag gtgaaatgac gcctcctcgc tcactcagtc gctgcgctcc tgccgtgaga
      841 ctgcggcggg cgttaccagc tcacagatga cgggatacgc aagcagcgct caaatcagga
      901 gaagccggga agaggatgcg gcgttgccgt ttttccatag gctccgcccc cctgacgagt
      961 atcataaaat ctgacgctca aatcagtggt ggcgaaaccc gacaggacta taaagatccc
     1021 aggcgtttcc ccctggtagc tccctcgtgc gctctcctgt tcctgccatt cggtttaccg
     1081 gtgtcattcc gctgttatgg ccgcgtttgt ctcattccac gcctgacact cagttccggg
     1141 taggcagttc gctccaagct ggactgtatg cacgatcccc ccgttcagtc cgactaccac
     1201 gctcttttcg gtaactatcg tcttgagtcc aacccgaaaa ggcacgacaa atcgccattg
     1261 gcagtagcca ctggtaaaca ggatgtgcga gagatgtatt cagagttctt gaagtggtgg
     1321 ccttactgcg gctacactgg aaggacagct ttggtgacat gtctcgcaca agactgttac
     1381 cacggttagt aaatctgcca ggattaacta accttcgaaa aaccacctgc cagggtggtt
     1441 ttttcgttta cagagcaaaa gactacgctc agaaagagat tatctcaaga agatcatctc
     1501 tttctcttac tcaagtcaaa gcaaaaaaac accactccat cacaaactca ggttatagtc
     1561 ggtatgcaac taataacact gtaatttctg tgcaaaatcg aggttatgca tatgcaaatc
     1621 aacatcaact gcaagagtat cccaacatct ttcgatgttg tctgctcgaa ttgtgaatgg
     1681 accggcgtgg ctacattaga ttatccggaa aacgtaaaaa ccctatctgt cggaggagaa
     1741 ataaatttca ctcataatga cgagacgcca aaatgtccac aatgtagcgt tggatatata
     1801 tatggtaaaa gtggcactta taaacgtaat agtgcaacta accatatgga cagaatcgga
     1861 gattataaag agtaaataat acgcatcaca gcaatctaac gagggaaata taatgattga
     1921 aaccacacta cttgccgttc tcactggcgc attaagcaat cttacttctg atgcaatcaa
     1981 aggcatcata gggaagttag caagtaaaca tcctgaagtt gaacaacaag cctcactgct
     2041 tgaaacacca ttaccttttg acgaagttga taaattattt tctcagatgc agggggccat
     2101 tcaggctgca gcagccaatg gtgaaattca gctagatgga gctgaattaa aagcattgag
     2161 cggaataaaa tttgatcacc aagccggaac tgttttgata aatggatctc aagtacaagc
     2221 gtcaatttta gtcactggtg gaggtcaaca tgctactgga aaaacgatca tacaaggtga
     2281 tacgacaatg actagccagg gtacaagtat aaaaatgtca ggtggtgctc aaatagtaat
     2341 gactggtgga gcccgaatca ttcagaacta atatgattta ccataacatc tcttgcccgc
     2401 accgctccgg acatgttcgt cacaaacggg gcggcagtca ggtaaaaccg gcaacaaacc
     2461 acccgataca ccgccccgtt cgtgacagat aaattttacc cggctgcatg gtcatgcagc
     2521 cagatgcata cggtctgatt tcaggccaga atctggatga acgccttaaa aacaggaaaa
     2581 tgcttctcca gccagtccca gatctccagc gccatgtaca ggcagttcag caccgtctca
     2641 atcacgttaa acagtctcat aatccctccg ttgtatacgc cgtgatgttt tcatcacgac
     2701 cgtatttagc gggaaattta tgagcccttc ttcgtggggt ttgtcactgg tgaagcctgt
     2761 cagcccagcg tcggaccgtt atagctccgc tgacgggaac gggcttccgc cagctctttt
     2821 tcgtgctgtc gctgctcgta tgcccgttcg gcggccaccg ccatttcatg ccgctgcact
     2881 actggctcaa acgctgtaac tgcctgctca agttcgccac ctgctgactc aagcgcgtga
     2941 cgcgctcgtt cagcgccgcg ttctcccgtt gcataagacc agacatcttc tgccattccg
     3001 cgaaggcgct ctcccactcg tccagccttt gcgagtagtc ctgatgtagc tgctctaatg
     3061 cggtcagcaa ctgtttttcc agttccgtca tgggctattt cctctccagt accatccagt
     3121 tcccttcctc cccgtaagct cccgctttcg ggttcacttt gacgcaggac agtttcttct
     3181 ccccgcagag cgacagctga acgccgtggt ttttctccga caacatggcc tgcgtccgct
     3241 cctgcgcccg gatagtctgg taattcccgg tgatctgctg cccctgccac cacagaatgc
     3301 tcccgctcat ggcgatcagc agtaccgaga ccagggtgat ggtcagccac gtccggccga
     3361 ccatacgcag cacgctcagg cggttcgact gcatcgccgc ggtcataccc tgctcgtggg
     3421 cgctgatggc gtcgctgatt ctcttcgcgc ttgcgctcag ttccgctttt acagatttct
     3481 cgtgctcgct gaatgcggct ttcagcatct cgccggtact ctgctgctgc gctttcgatt
     3541 gctgctccaa gtccttcgcc agcgctaaaa gactgctcat aaatggctcc cttcagtcgg
     3601 atgtttcgcc ccccgtccgg gtcggcaatg ctgatactgt tttttgtagt gcggaccacc
     3661 tcaaaacctg ccgctgtgag cgcacctgtg acgtcctcgc gagttttgag ctccccggat
     3721 gaggctaagg ccagcaaccc acgtgtaatc gcctgagcgg cttccagctt cgtttccggc
     3781 agtgcggacg gcgtaaccag taaccgccgg ttctccgggg cgtttggatc atgcagtccc
     3841 agtctgccgt tcaccacggt ctgccaggca tcgatgcgcg gccggtcggc gcgatcgtaa
     3901 tacggctgca ggcgtttccc ggtcagcagt tcagtgttgg ggatcaggaa attcagctcc
     3961 agccgcccct tgtcggtgtg ctccacccac agaatgctgt actggtcttt atcgagcccg
     4021 ggcatcagaa cccgctcaaa gctggccatg at
//
