LOCUS       NZ_CP082998             4411 bp    DNA     circular CON 10-FEB-2024
DEFINITION  Klebsiella pneumoniae strain 6911.28 plasmid p3-6911.28, complete
            sequence.
ACCESSION   NZ_CP082998
VERSION     NZ_CP082998.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21016531
            Assembly: GCF_021137695.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     A collection of hybrid assemblies of carbapenemase-producing
            Klebsiella pneumoniae clinical isolates from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4411)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 187.6888x
            Sequencing Technology :: Illumina NovaSeq and Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/10/2024 03:03:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,407
            CDSs (total)                      :: 5,288
            Genes (coding)                    :: 5,175
            CDSs (with protein)               :: 5,175
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 46 of 113
            Pseudo Genes (incomplete)         :: 70 of 113
            Pseudo Genes (internal stop)      :: 13 of 113
            Pseudo Genes (multiple problems)  :: 14 of 113
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP082998.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="6911.28"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3-6911.28"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.947928 N 7.422277 E"
                     /collection_date="2018"
                     /collected_by="Institute for Infectious Diseases (IFIK),
                     University of Bern, Friedbuehlstrasse 51, 3001 Bern,
                     Switzerland"
     gene            95..592
                     /locus_tag="K9F31_RS26900"
                     /old_locus_tag="K9F31_26860"
     CDS             95..592
                     /locus_tag="K9F31_RS26900"
                     /old_locus_tag="K9F31_26860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_020325392.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLQMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            599..814
                     /locus_tag="K9F31_RS26905"
                     /old_locus_tag="K9F31_26865"
     CDS             599..814
                     /locus_tag="K9F31_RS26905"
                     /old_locus_tag="K9F31_26865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1319..1690
                     /locus_tag="K9F31_RS26910"
                     /old_locus_tag="K9F31_26870"
     CDS             1319..1690
                     /locus_tag="K9F31_RS26910"
                     /old_locus_tag="K9F31_26870"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021314598.1"
                     /translation="MSKKNDLNLSESTLESLREYVDDFGMTVDDVVLKLINENKSLKES
                     LGQDFVLSGEKEAHHFKDYVIHKLPKGKILVTHNGLKASNMKKILIEAGRELGMDENEL
                     NPDFTTYEIGRFLFKHLHA"
                     /name="hypothetical protein"
     gene            complement(1787..2212)
                     /locus_tag="K9F31_RS26915"
                     /old_locus_tag="K9F31_26875"
     CDS             complement(1787..2212)
                     /locus_tag="K9F31_RS26915"
                     /old_locus_tag="K9F31_26875"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_046181484.1"
                     /translation="MSFQQVLNEVKVISSNGDTSLAITRYDQQGLNRFLLRDLSHQTET
                     RSNYVNNLEQLCQQAKCNRVILNVNEISESFYMKLITFCNFTLLDAKQDMQHLNGFNYF
                     IVLNSFDENSGHTVWAPSYSPNCVTERDLDEYDPDRW"
                     /name="hypothetical protein"
     gene            complement(2225..2479)
                     /locus_tag="K9F31_RS26920"
                     /old_locus_tag="K9F31_26880"
     CDS             complement(2225..2479)
                     /locus_tag="K9F31_RS26920"
                     /old_locus_tag="K9F31_26880"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_101361146.1"
                     /translation="MNITINTPSVKTILDVQCDHCNFTGTIDYEAPRISKLTVGGKITF
                     DNALCPQCKTGEIFAPGGQYVRDDATGRMNRTGDANISL"
                     /name="hypothetical protein"
     gene            complement(2734..2867)
                     /locus_tag="K9F31_RS27065"
                     /pseudo=""
     CDS             complement(2734..2867)
                     /locus_tag="K9F31_RS27065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3487..3828
                     /locus_tag="K9F31_RS26925"
                     /old_locus_tag="K9F31_26885"
     CDS             3487..3828
                     /locus_tag="K9F31_RS26925"
                     /old_locus_tag="K9F31_26885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          3218..3393
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="82.32"
                     /coverage="100.0"
                     /evalue="5.910000000000001e-33"
     Typing          complement(2756..3272)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.962"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2..405
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="81.481"
                     /coverage="86.0"
                     /evalue="1.2500000000000001e-58"
     Typing          3819..4411
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.98e-126"
ORIGIN
        1 gcggccggtt ttgaggtggt cagaaccaca aaaaacagta tcagcattgc cgacccggac
       61 ggggggcgaa atatccgact gaggggagcc atttatgagc agtcttttaa cggcctcgag
      121 ggacttcgag gagaaatcga aagcacagca gcagcttacc gaagagaggc tgaaagccgc
      181 attcagcaag cacgagaacg ttgtcaaatc ggaactgaac gcaagcgcga agagaatcaa
      241 cgacgccatc agcgcccacg aacaggggat gaacgcggcg atgcagtcga accggctgag
      301 cgtgctgcga atggtcgggc ggacgtggct gaccatcacc atggtgtcag ggctgctgtt
      361 cgccagcctg agcggggtgc tgtggtacca ggggaaccgg atagcggcga acctggcgga
      421 aatcaggcag cagagagata cgctgtcgaa actgcagatg cagacgtggg gcgtgaccta
      481 tctggagaac cgcaacggac ggtttctggt gctgccggag gggatgaaag ccgaaacggg
      541 ccggacggtg gacaacaaga cgcggaacgc ggtgaagctg gtacgggagt agagcagaat
      601 gacggaactg gaaaaacaat tgctgagcgc gttagagcag ctacagcagg actactcgag
      661 aaggctggac gagtgggaga gcgccttcga ggaatggcgg aagatgtctg gtcttatgca
      721 acgggagaac gcggcgctga gcgagcgcgt gtcgggcttg agcaggcagg tgcagagttt
      781 gagcgagcag ctgcgccggt tatcgacagg ctgaatgaga ttgagcaaca gcgatacggg
      841 caaagaacgg aaaaggaacc agagaagaca gcagatctgg taccggaacg gcaacgcaca
      901 ttatctcatg gtgacaggga gtatggagac tgataaacgc ccgtctcagg tggcctgagc
      961 gtgacgggga tcatggccat tttctgcgat ttcagcacac agagagtctt ttttaaccga
     1021 aatcaccggc tatgcagtga tgtgaataag tgatgcatat gcgtaaaata aatcaggtgc
     1081 gtttctggtg gttttcggtg tacttgccac caccttttgc ccgtcagcca tcagaaacgc
     1141 cctgagtgcc tccggcgcgg tgcgggtaag agatgttatg gtaaatccag cggtgtagct
     1201 gttctttttg aaccagcgat cagtgacttc tatgttgctt gttcaatact aaaaatatgt
     1261 gtactatact acttgtgttg tttttttctt ttctgacaac tagcatagtg gtgactacat
     1321 gagtaaaaaa aacgatttaa acctcagtga atcaacgtta gaaagcctca gggagtatgt
     1381 cgatgacttc ggcatgactg ttgatgatgt tgttctgaag ttaattaatg agaataagtc
     1441 attgaaggaa tcacttggac aagactttgt gttatctggc gaaaaggaag cgcaccactt
     1501 taaagattat gtgattcata aactgcccaa aggaaaaatt ctggttaccc ataatgggct
     1561 taaggccagc aacatgaaga agatattgat tgaggcgggg agggagctag gcatggatga
     1621 aaatgaactc aatccagatt tcacaaccta tgagataggg cgttttttgt ttaagcacct
     1681 acatgcgtaa caatcctgca cgcctgaagg gcaggaatcg aacttagctg cccggatgtt
     1741 atggtaaatt taggtgctat acggattttt tattaggcga tctgagttac caacgatctg
     1801 ggtcgtattc atctaaatcg cgctcagtta cacaattggg gctatacgat ggtgcccaaa
     1861 ctgtatgccc actgttttca tcaaaagaat taagaacaat aaagtaattg aagccattca
     1921 aatgttgcat atcttgtttg gcgtctaaca gagtgaaatt acaaaaagtt attaatttca
     1981 tataaaacga ctctgaaatt tcattcacgt tcaaaataac cctgttacat tttgcctgct
     2041 ggcataattg ctcaagatta tttacatagt tactacgagt ctcggtctga tgagataagt
     2101 cacgtaaaag aaaacggttc aatccttgtt ggtcatatct ggtaatcgct aggcttgtat
     2161 caccattgct tgaaataacc tttacctcat tcaaaacttg ctgaaaactc atatgataag
     2221 ttccttatag actaatgttc gcatcgcctg tgcgattcat tcttccagta gcatcatctc
     2281 taacgtattg accacctgga gcgaaaattt cacctgtttt acattgcggg cataaagcat
     2341 tgtcgaaggt tatttttccg ccgacagtaa gctttgaaat tcgaggggct tcataatcaa
     2401 tagtgccagt gaagttacag tgatcacact gtacatcaag gatggttttt actgacgggg
     2461 tattgatagt tatattcatt ctcaacaatc cttatcatta caagtggttg tgatgacttt
     2521 atcagagaat gcttagctaa tgaaaacgaa ggatcttctt gagatcgtgt tcctctcgtc
     2581 gtagtcttca ttcctgtaaa cgaaaaaacc gccttgctgg gcggtttttt cgaaggttct
     2641 tggagcagca actctttgaa ccgaggtaac tggcttggag gagcgcagtc accaaatctg
     2701 tcctttcagt ttagccttaa ccggcgcata acttcaagac tcaactcctc taaatccgtt
     2761 acctgtggcc gttgccattg gcgctttgta tgtctttccg ggttggactc aagacgatag
     2821 ttaccggata aggcgcagcg gtcggactga acggggggtt cgtgcataca gtccagcttg
     2881 gagcgaactg cctacccgga actgagtgtc aggcgtggaa tgagaaaaac gcggccataa
     2941 cagcggaatg acaccggtaa accgaaaggc aggaacagga gagcgcacga gggagctacc
     3001 agggggaaac gcctgggatc tttatagtcc tgtcgggttt cgccaccact gatttgagca
     3061 tcagattctg tgatgctcgt caggggggcg gagcctatgg aaaaacggca gcgccgcgtc
     3121 cttttctctt ccttgccttc acggcatatg tctctgcatt tctccgcgtg ccggttacgc
     3181 ccgccgcagc cgaacggcag gagcgtcagc gaccgagtga gcgaggaggc gtcatatctc
     3241 ctgcacaacc attatctgtc ttacgcccgg cagctgcatg tcatacctgc catatatagc
     3301 actttcgctg atacccatac caatgccaac atagtaagcc agtatacact ccgctagcgc
     3361 tacgtgactg gttcagggct gcgccccgaa acccgctaaa agccactgac gcgcctgcgg
     3421 cttgtccaac cccgcgccga ccgggaaagg ctttcccgtc cgtcacggcg ttatcaggag
     3481 gcgattctgg cagataaacg caacaagatg ctcacgatgt gggtgacgga agacgaacac
     3541 cggcggttgc ttgagcggtg cgacggaaaa caactggcgg cgtggatgcg ccagacctgc
     3601 cttgatgaga aaccgacacg cgccggcagg cttccctcga tttcgcccgc gctgctgcgt
     3661 cagcttgctg gcatgggcaa taacctgaac cagatcgccc ggaaagtgaa cgccggtggt
     3721 gccggtcatg accgggtgca gatcgtggca gcgctgatgg cgatcgatgc cggtctggaa
     3781 cggttgcggc atgccgtact ggaaaaaggg ccggacgatg attgttaaat tccatccccg
     3841 gggtcgcggc gggggcgccg gtcctgtgga ttatcttctg ggtaaagacc ggcagcgtga
     3901 aggtgccagc gtcctgcagg ggaagccgga agaagtccgg gagctgattg atgcgtcgcc
     3961 gtatgtgaaa aaatatacct cgggggtgct gtcattcgcg gaggcggacc tgccgccggg
     4021 tcagcgtgaa aaactgatgg ccagctttga gcgggttctg atgcccggac tcgataaaga
     4081 tcagtacagc attctgtggg tggaacacgc agacaagggt cgtcttgagc tgaattttct
     4141 gatccccaat accgaattac tgacggggaa acgcctccag ccgtattacg atcgtgccga
     4201 ccggccgcgc atcgatgcgt ggcagacagt ggtcaacggc aggctggggc tacatgatcc
     4261 gaacgacccg gagaaccggc gggcgctggt cacgccgtca ggactgccag aaacgaagca
     4321 ggaagccgca gagacgatta cacggggttt gctgatgtta gcctcatcag gagagctgaa
     4381 aacgcgtgat gacgtcacag gggcgctcac a
//
