LOCUS       NZ_CP082960             4018 bp    DNA     circular CON 02-NOV-2023
DEFINITION  Salmonella enterica subsp. arizonae strain S499 plasmid unnamed6,
            complete sequence.
ACCESSION   NZ_CP082960
VERSION     NZ_CP082960.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21210682
            Assembly: GCF_019967915.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. arizonae
  ORGANISM  Salmonella enterica subsp. arizonae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Lu,P.X.
  TITLE     No
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Lu,P.X.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2021) Wuhan Polytechnic University, Wuhan
            Polytechnic University, Changqinghuayuan, Wuhan, Hubei 430000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 09-AUG-2021
            Assembly Method :: SOAPdenovo v. Version 2.04; unicycler v. Version
            2.04
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 403.4x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/02/2023 04:14:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,456
            CDSs (total)                      :: 5,334
            Genes (coding)                    :: 5,069
            CDSs (with protein)               :: 5,069
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 265
            CDSs (without protein)            :: 265
            Pseudo Genes (ambiguous residues) :: 0 of 265
            Pseudo Genes (frameshifted)       :: 111 of 265
            Pseudo Genes (incomplete)         :: 195 of 265
            Pseudo Genes (internal stop)      :: 38 of 265
            Pseudo Genes (multiple problems)  :: 70 of 265
            Pseudo Genes (short protein)      :: 1 of 265
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP082960.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. arizonae"
                     /mol_type="genomic DNA"
                     /strain="S499"
                     /isolation_source="anthropogenic"
                     /sub_species="arizonae"
                     /db_xref="taxon:59203"
                     /plasmid="unnamed6"
                     /geo_loc_name="China: Wuhan"
                     /collection_date="2020-06-20"
     gene            complement(join(3183..4018,1..661))
                     /locus_tag="K8I78_RS27370"
     CDS             complement(join(3183..4018,1..661))
                     /locus_tag="K8I78_RS27370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_034169352.1"
                     /translation="MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELID
                     ASPYAKKYTSGVLSFAEQDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLE
                     LNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSAL
                     PEAKQEAAQAITRGLLSLASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRN
                     IRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRH
                     PRPRPEAVLSHEPTHERDAAYDQPDVADHSPGLRATDRLERGHSVVAGATDTRQLHDHP
                     GTEEHAGHAFREEQRRPAHDLRGGETPLREGEPGSGKIRRGFELDDTGGEIAHDGTGKT
                     VAERIRAATAGLLEKAGRVGERLRGMADDVWAYATGERGAERARHGLEQAGAEFERSAA
                     PIVARLNGIEAHREQERAAQHQKALELERSQRQKGFELGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(651..974)
                     /locus_tag="K8I78_RS27215"
                     /old_locus_tag="K8I78_26990"
     CDS             complement(651..974)
                     /locus_tag="K8I78_RS27215"
                     /old_locus_tag="K8I78_26990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1622..1735
                     /locus_tag="K8I78_RS27220"
                     /old_locus_tag="K8I78_26995"
     CDS             1622..1735
                     /locus_tag="K8I78_RS27220"
                     /old_locus_tag="K8I78_26995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(2164..2376)
                     /locus_tag="K8I78_RS27225"
                     /old_locus_tag="K8I78_27000"
     CDS             complement(2164..2376)
                     /locus_tag="K8I78_RS27225"
                     /old_locus_tag="K8I78_27000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     gene            complement(2631..3158)
                     /locus_tag="K8I78_RS27230"
                     /old_locus_tag="K8I78_27005"
     CDS             complement(2631..3158)
                     /locus_tag="K8I78_RS27230"
                     /old_locus_tag="K8I78_27005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016246513.1"
                     /translation="MKCFWACSVSVVLAMSFTVAAAENNDNVTYTKPSAGRDLYLTCKG
                     YQVKGASVINVEKPSYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMH
                     EHWSLVHVGGRASVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIY
                     TRTGVFRGGIED"
                     /name="hypothetical protein"
     Typing          complement(1088..1265)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          1212..1735
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.434"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3..682)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.595"
                     /coverage="99.0"
                     /evalue="4.09e-146"
     Typing          complement(3196..4016)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="88.321"
                     /coverage="99.0"
                     /evalue="1.8e-154"
ORIGIN
        1 gccccccgtc agggtcggca atgctgatgc tgcttttcgt ggtgcgcacc acctcaaaac
       61 ccgcactttc cagcgcctca gtgacgtcct gacgggtttt cagctccccg gatgaggcaa
      121 gggaaagtag gccgcgcgta atcgcctggg cggcttcctg cttcgcttcc ggcagcgcgg
      181 acggtgtaac cagcgcccgc cggttttccg gcgcgttcgg gtcgtgcagc cccagtctgc
      241 cgttcactat ggtctgccag gcatcaatgc gcggacggtc ggcgcggtcg taatacggct
      301 ggagacgtct gccggtcagc agctccgtgt tcgggatcag gaagttcagc tccagccgcc
      361 ctttgtcccg gtgctcaacc cacagtacgc tgtactggtc tttatcgagt ccgggcatca
      421 gaacccgctc aaagctcgcc atcagctttt cacgctggcc gggcggcaaa tcctgttcgg
      481 caaaagacag cacgccggag gtgtatttct tggcgtaagg cgaggcgtca ataagctccc
      541 gcacttcctc cggcttaccc tgcagaacgc tggcgccgtc gcgctgccgg tctttcccca
      601 gcagataatc caccggaccg ccgccaccgc cgcggcctct gggatgaaac ttaacgatca
      661 tcgtctgccc ccttttccag cacggcgtgc cgcagccgct cgagtccggc atcaatggcc
      721 atcagcacgg cgacaacctg cacgcgatcg tgcccagtac cgccaccggc gttaacctgc
      781 cgggcaatct ggttgaggtt gttacccatg ccggcaagct gacgaagcag cgccggcgag
      841 atggatggaa gtttgccagc acgcgagggc ttttcgtcca ggcatatctg gcgcatccag
      901 gccgcgagtt gtttaccctc acagcgctcc agaagtcggc ggtgctcgtc ttctgtcacc
      961 cacatagtga gcattttgtt gcgcttttct gccaaaccat cctccggata acaccggttc
     1021 gggcgggaaa ttttttcctg tccggagcgg tgttgggcaa gcccgcaggg cgcggcagta
     1081 cttttcagcg ggtttcgggg cgcagccctg aaccagtcac gtagcgctag cggagtgtat
     1141 actggcttaa catggtaaat cggagtgggg attcaggaaa gtgcttcatg tggcagggag
     1201 aaaatgctgc tgtggggcgt aagtgcgaaa tgcagatccc ggtgaaatga cgcctcctcg
     1261 ctcactcggt cgctgcgctc ctgccgtgag actgcggcgg gcgttgccag cttacgaatg
     1321 gctggataaa gagactaagc ggaaatcaat cagaaagggc ggaaaaagga tgcggcgttg
     1381 ccgtttttcc ataggctccg cccccctgac aagcatcacg aaatctgacg ctcaaatcag
     1441 tggtggcgaa acccgacagg actataaaga tcccaggcgt ttccccctgg tagctccctc
     1501 gtgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt atggccgcgt
     1561 ttatctaatt ccacgcctga cactcagttc cgggtaggca gttcgctcca agctggactg
     1621 tatgcacgaa ccccccgttc agtccgaccg ctgcgcctta tccggtaact atcgacttga
     1681 gtccaacccg gaaagacacg acaaaacgcc actggcagca gccactggta actgatttag
     1741 aggagttagt cttgaagtta tgcgccggtt aaggctaaac tgaaaggaca agttttggtg
     1801 actgtgctcc tccaagccag ttacctcggt tcaaagagtt gctgctctga gaaccttcga
     1861 aaaaaccgcc ttgctgggcg gttttttcgt ttacagtgct aagagattac gattctccat
     1921 gaatgatctc aagaagatcc gtttaaaaaa gcgggtttta tggggggata aagttcgtct
     1981 agcccagtca ctttggatta cagctaggtt tcgtaagcca tgcaagaatg cctgtaacta
     2041 acaaaatagg ccctgcaacg tacgtaacat agactccaac atacgacact gtgaaacata
     2101 tgagtacgta tatagacagt gttgtccaaa aaatgactgt tgttttacag tgaatccact
     2161 ctttcatttt tcaataaacc ccacaccgtc tggagatctt attatcgttt tgccaggatt
     2221 agctttcgcc caaaccaaag catcttgaaa agaagagaat tttttttttg aatttttagt
     2281 ttttcggcga tcttctcgaa aatattcgct gttattctca tcaattatcc gatcaaaatc
     2341 agcaccagct ccaaaggtac gctcaaaatc ccccattttc tgcccccatt aaatttaata
     2401 aaaaaacaga tttaaaatat ccaaaagaca ctcttattta ccataacatc ccttgttcgc
     2461 accgccgcag acagcctcag caccgttctg cgccatgaac cgcaaaagag cacctcttac
     2521 cacgtaaaaa cgccgataaa tgccccccgt aagttcttac ggtatgcata gttatgcacg
     2581 gaaatgaact gacactctgt tcaatggatt ttcatgctgt aagcagtatt ttagtcttct
     2641 atgccccctc gaaacacacc tgttcttgtg tagatctttt cgacccaaga tggtctttta
     2701 tccgagttca tgcagccgta caggaacaca cctgttttgg gtttatagct ccccccctcc
     2761 tgtggctggt tatctacaaa tgaataatca atcttttcac ctttgactga agcacgcccc
     2821 ccaacatgaa ctaaagacca gtgctcatgc atcacatggc tttcaatcaa tccaaatgaa
     2881 gaaaaacccc atgaatcaaa aaagaccttg agtccgtcag acgcaccaac aggagtaatg
     2941 attgcaaatt caacctgctc accagtacct tcaaggtaag aaggtttctc gacgttaatt
     3001 acagatgccc ccttcacctg ataaccttta caggtaagat ataagtccct cccggctgac
     3061 ggttttgtat atgtaacgtt gtcgttattc tccgcagcag cgactgtaaa tgacatagcc
     3121 aaaaccaccg agactgagca agcccagaaa catttcataa cgcatccctt ttcattgatt
     3181 aactacattc caagctcaaa acctttctgc cgctgcgatc gttccagctc cagcgctttc
     3241 tggtgctgcg ccgcgcgctc ctgctcccgg tgcgcctcga tgccattcag ccttgcgaca
     3301 atcggcgcag ctgatcgctc aaactctgca cctgcctgct caagcccgtg acgcgctcgc
     3361 tcagcgccgc gttctcccgt tgcataagcc cagacatcgt ccgccattcc gcgaaggcgt
     3421 tctcccactc gtccagcctt ttcgagtagt cctgctgtag ctgctctaat gcgctcagca
     3481 actgtttttc cagttccgtc atgtgctatt tccccgccag tatcatccag ctcgaatcct
     3541 ctccgaatct tcccgcttcc gggttcaccc tcacgcagcg gcgtctctcc tccccgcagg
     3601 tcgtgagctg gacgccgttg ttcttctctg aaagcatggc ctgcgtgctc ttctgttcct
     3661 ggatggtcgt gtagttgtcg agtatctgtt gcccctgcca ccacagaatg cccgcgctcg
     3721 aggcgatcag tagcgcggag accaggacta tggtcagcca cgtctggctg atcatacgca
     3781 gcatcccttt cgtgcgttgg ctcatggctg aggacagctt ccggtcgtgg tcgaggatgg
     3841 cggcgctgat tctcttctcg ctttcgctca gttccgctct gacagacttc tcgtgctcgc
     3901 tgaatgcggc tttcagcatc tcgccggtag tctgctgctg cgctttcgat ttctgctcta
     3961 agtccttcgc cagcgttaaa agactgttca tagatggctc ccttcagtcg gatgtttc
//
