LOCUS       NZ_CP082935             1718 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar London isolate N18-04674
            plasmid unnamed5, complete sequence.
ACCESSION   NZ_CP082935
VERSION     NZ_CP082935.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20990803
            Assembly: GCF_025643195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar London
  ORGANISM  Salmonella enterica subsp. enterica serovar London
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Bharat,A.
  TITLE     Importation of an OXA-48-Harbouring Salmonella enterica Serovar
            London into Canada
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Bharat,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2021) Wastewater and Antimicrobial Resistance
            Division, Public Health Agency of Canada, 1015 Arlington St,
            Winnipeg, MB R3E3R2, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 18-JAN-2020
            Assembly Method                   :: Unicycler v. 2020-01-18
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 79.0x
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 03:17:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,799
            CDSs (total)                      :: 4,683
            Genes (coding)                    :: 4,524
            CDSs (with protein)               :: 4,524
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 70 of 159
            Pseudo Genes (incomplete)         :: 118 of 159
            Pseudo Genes (internal stop)      :: 30 of 159
            Pseudo Genes (multiple problems)  :: 49 of 159
            Pseudo Genes (short protein)      :: 1 of 159
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP082935.1.
            Bacteria and source DNA available from Salmonella London submitted
            to Public Health Agency of Canada.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Salmonella enterica subsp. enterica serovar
                     London"
                     /mol_type="genomic DNA"
                     /serovar="London"
                     /isolate="N18-04674"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:149390"
                     /plasmid="unnamed5"
                     /geo_loc_name="Canada"
                     /lat_lon="49.89 N 97.13 W"
                     /collection_date="2018"
                     /collected_by="Public Health Agency of Canada"
                     /genotype="OXA-48"
     gene            complement(119..523)
                     /locus_tag="K6991_RS23945"
                     /old_locus_tag="K6991_23820"
     CDS             complement(119..523)
                     /locus_tag="K6991_RS23945"
                     /old_locus_tag="K6991_23820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_134360116.1"
                     /translation="MKILAAMEIADCDFEHMDMDVLVGALLKLKLWDSHHHNLNMQGKR
                     SFLDDLRADGIEAIKKYEAEIESENESFAEERLILRIYQNELGLWLGRLFCGEAEIGLC
                     GVYGSADEVRTAVRQSGILCDSIEIFQKDA"
                     /name="hypothetical protein"
     gene            complement(737..973)
                     /locus_tag="K6991_RS23950"
                     /old_locus_tag="K6991_23825"
     CDS             complement(737..973)
                     /locus_tag="K6991_RS23950"
                     /old_locus_tag="K6991_23825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1131..1215)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="100.0"
                     /evalue="3.06e-32"
ORIGIN
        1 gttgcggtga aatgcgattg cccagtctgg cacaacaccc acacaatcag aacaacatag
       61 aacgacctgt cgctggtcgc tccgctcccc gttttctggt gtacccacca cgggggcatt
      121 aggcatcctt ttgaaaaatt tcgatgctat cgcacaaaat accgctttga cgcacagctg
      181 ttcgaacctc atcagccgat ccataaacac cacacagacc gatctcagcc tcaccacaaa
      241 agagcctccc taaccataag ccaagctcat tctgatagat cctcagtatt aatcgctcct
      301 ccgcaaagga ctcattctca gattcaattt cagcctcgta tttcttaata gcctcaatac
      361 catccgctct taaatcatcg agaaagctcc tcttaccttg catgttcaag ttgtgatggt
      421 ggctatccca caattttaat ttcagtaaag cccctactaa gacatccata tccatatgtt
      481 caaaatcaca atcagctatt tccattgcag ccaaaatctt catacaccct ccgatttacc
      541 ataacatccg ttatcagcac cccctgacag gccctcagcg caattctgac gcatcagagc
      601 cgtttccggc acatttcctc acccacatcc cggaaaaacg cccctgatga tttctgcgcg
      661 actgcatagc tatgcacgcg ggtgaaccgc aggtgatttc gcagcatccg caccactaaa
      721 ccgccaaaat ccgcaatcag cggcgcggcg cgcgcggacg tgaccaggca aaatcggact
      781 gctgccgctc atcctcacgt aatgcacgct ggcggtcggc gtaacgctgc gactcaatct
      841 gcgcacgcgc tctgttcagg acgatgtgcc ggttaggctg attgagcttc ttcccggccg
      901 cacgttcggc agcggctata gcgtcgtcga taaacttttt ctcagcgggg gtcaggtttg
      961 tcagtctcgt catgtttatc tccgtatgag aatagcccct gcagtctgcc agacacagta
     1021 ggaacgatga agcgtaagcg acggtgaaag gcagtcagaa acggtgaacg ggagcggatt
     1081 ttaatccggt gccgtgaggc gttggacaag ccgcaggcgc gtcagtggat ttagcgggtt
     1141 tcggggcgca gccctgaacc agtcacgtag cgctagcgga gtgtatactg gcttaatatg
     1201 ttggcatagg tgcggttatc aggaaagtgc gtcatgtggc aggtgtgata tgtggctcag
     1261 aagcgtccgc aataccatgc ccgaatagtg aaatgatgcc tcctcgctca ctcggtcgct
     1321 acgctccgga cgtgagactg cggcgggcac tacaactttt ttcacataca tgaagtgagg
     1381 tgtgacgggg atcttgttga aaaatcaggc tacagatgta caaaagcccc gtgacagaat
     1441 cacagggctt cggtactcta attcttcgca gatacctgcc aggatcagac gtagcaatcc
     1501 tatcctagca gggctggcta gccttgtcac taccagctta ataccattca acgacattaa
     1561 aatcatatct gcacccttga aactcaggtc tacgccccgg actccggcag gataaacagg
     1621 caaacggtgg aaacgtaact tagccgcgaa agagttaagc tctaccccgt ctcgctgtac
     1681 gataacaggc acctgataaa gtgagattca aggcagga
//
