LOCUS       NZ_CP082933             5716 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar London isolate N18-04674
            plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP082933
VERSION     NZ_CP082933.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20990803
            Assembly: GCF_025643195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar London
  ORGANISM  Salmonella enterica subsp. enterica serovar London
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5716)
  AUTHORS   Bharat,A.
  TITLE     Importation of an OXA-48-Harbouring Salmonella enterica Serovar
            London into Canada
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5716)
  AUTHORS   Bharat,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2021) Wastewater and Antimicrobial Resistance
            Division, Public Health Agency of Canada, 1015 Arlington St,
            Winnipeg, MB R3E3R2, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 18-JAN-2020
            Assembly Method                   :: Unicycler v. 2020-01-18
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 79.0x
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 03:17:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,799
            CDSs (total)                      :: 4,683
            Genes (coding)                    :: 4,524
            CDSs (with protein)               :: 4,524
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 70 of 159
            Pseudo Genes (incomplete)         :: 118 of 159
            Pseudo Genes (internal stop)      :: 30 of 159
            Pseudo Genes (multiple problems)  :: 49 of 159
            Pseudo Genes (short protein)      :: 1 of 159
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP082933.1.
            Bacteria and source DNA available from Salmonella London submitted
            to Public Health Agency of Canada.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5716
                     /organism="Salmonella enterica subsp. enterica serovar
                     London"
                     /mol_type="genomic DNA"
                     /serovar="London"
                     /isolate="N18-04674"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:149390"
                     /plasmid="unnamed3"
                     /geo_loc_name="Canada"
                     /lat_lon="49.89 N 97.13 W"
                     /collection_date="2018"
                     /collected_by="Public Health Agency of Canada"
                     /genotype="OXA-48"
     gene            1..930
                     /locus_tag="K6991_RS23875"
                     /old_locus_tag="K6991_23750"
     CDS             1..930
                     /locus_tag="K6991_RS23875"
                     /old_locus_tag="K6991_23750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016237866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_032195366.1"
                     /translation="MSAVLQLFREKLPHKPYCTNDFTYGVRILPKDIAILARFIQQNQP
                     HAQHWLAFDVDRTGAAIDWSDRNCPAPNITVKNPRNGHAHLLYALTLPVRTAPDASASA
                     LKYAAVIERALCEKLGADVNYSGLICKNPFHQEWQVVEWRWELYTLDELADYLDLSASA
                     RRRVDKDYGMGRNWYLFEKGRKWSYRAIRQGWPAFSPWLDAVIQRVEMYNASLPVPLSP
                     AECRAIGKSIAKYTYRKFSPEGFSAVQAARGRKGGNANSSENQAIKGQKSKRVAVATSA
                     RTLKPWVTLGISRATYYRKLKCDPDLAK"
                     /name="replication initiation protein"
     gene            complement(1137..1583)
                     /locus_tag="K6991_RS23880"
                     /old_locus_tag="K6991_23755"
     CDS             complement(1137..1583)
                     /locus_tag="K6991_RS23880"
                     /old_locus_tag="K6991_23755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184722.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            1755..2840
                     /locus_tag="K6991_RS23885"
                     /old_locus_tag="K6991_23760"
     CDS             1755..2840
                     /locus_tag="K6991_RS23885"
                     /old_locus_tag="K6991_23760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001530418.1"
                     /translation="MASYHCTVKTGAKGVALKHADYISRSGEYKNYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKARF
                     GETPQERKSALVALRSHWADVQNEHLARHGHQSRVDHRSLKEQGIKRTPEVHLGPVRVA
                     VMNADQVCAILARRNAEREKLEAEQERDSIIDLKTTLKEALAERDNIPPSLDELGAELK
                     AFVESSFDELNEVMQLNSLINGALDSMMKQFQVEEERKLQQERLIEAEKQRDLERERER
                     VRQRAYSSPAPSRSRDYGMSR"
                     /name="MobA/MobL family protein"
     gene            2861..3577
                     /locus_tag="K6991_RS23890"
                     /old_locus_tag="K6991_23765"
     CDS             2861..3577
                     /locus_tag="K6991_RS23890"
                     /old_locus_tag="K6991_23765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001175444.1"
                     /translation="MQLDEHSRKIAALVAYNDKQIKEMNRLITLLNERVNDLNTFTSTL
                     EREGKVVSGISYSFRDSVSNVKFYINKGMDEASCKLQKSVSDTLTSLLREKLSFTLNDV
                     KKEWVDFEEQTSKEIKESLKQTTREAEVATGIIRKTMEKYTVTRIVEKVIVLIVLFLLL
                     MIAPVFYAEYLKMNISSLMEEQKKHESMLKEWKEKAPLAEFSKCGDYRKACVLVDDESG
                     YYFNEQSPNKKYAILK"
                     /name="hypothetical protein"
     gene            complement(3635..4207)
                     /locus_tag="K6991_RS23895"
                     /old_locus_tag="K6991_23770"
     CDS             complement(3635..4207)
                     /locus_tag="K6991_RS23895"
                     /old_locus_tag="K6991_23770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="WP_000456846.1"
                     /translation="MEYSTLLSFAIVTLSQTISIGPGVALVINNAFSHGLKSSIKTSIY
                     IRIGETIVMAISLFALSSTSSTEQHFHIIKIFGGGYLIYIGLMGLINKKNKQRKEQKPF
                     LIPLLNPKAYLFFAALIPTFIDNNTNITLNFFILGVLFIFISFLTDLIYIAISLTIRDK
                     LTPSFSRYISICSSIFILGTGIYFIFT"
                     /name="LysE family translocator"
     gene            complement(4214..5164)
                     /locus_tag="K6991_RS23900"
                     /old_locus_tag="K6991_23775"
     CDS             complement(4214..5164)
                     /locus_tag="K6991_RS23900"
                     /old_locus_tag="K6991_23775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001058673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001058673.1"
                     /translation="MNNFINECISAPRINGMAEFFSSTASGEKHKPFRLVEIDDRLFHS
                     YDYIKFAKHLTKNSGPFVNHYFCSIPYSKEEECRLGTTVIKYAITLNKKLNTWCLGMAE
                     GAMARTISELSKGNIQTLTTSPTKENEHAFFKYGSSENAYFICTPFFLLEERLKNSNLK
                     QFNQGFDIIIEDTTFQMYSPNRSGQINHVKRLLNNDGIFIFTEKHSSEHDEYQKREIQK
                     DYSFKQRYFSKDEINTKKEIVLNTMNLNEVSVDDMLSAIKQHFKYASIYWNSGNFYSIA
                     ASNSLKHISTFINLLPKAAIPMEYVYEKLPRNISW"
                     /name="hypothetical protein"
     Typing          2..930
                     /name="rep_cluster_2141"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.505"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1756..2837
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagcgccg tacttcaact cttcagggaa aaattaccgc acaaaccgta ctgtacgaac
       61 gatttcacgt acggcgttcg cattctaccg aaagatatcg ccatccttgc ccgtttcatc
      121 cagcagaacc agccacatgc gcagcactgg ctggcctttg acgttgaccg gacgggggca
      181 gcgatcgact ggagcgaccg gaactgtccg gccccgaaca tcaccgtaaa aaatccacgt
      241 aacgggcacg cgcatctgct ctacgcgctc actcttccgg tgagaaccgc gccggatgca
      301 tcggcttcgg cgctcaaata cgctgccgtg attgagcgtg cgctgtgtga aaaactgggc
      361 gcggatgtga actacagcgg cctgatctgc aaaaatccgt tccaccagga atggcaggtg
      421 gtggaatggc gttgggaact ctataccctc gacgaactgg cggattatct tgatttgagc
      481 gcctcagcgc gccgtcgcgt cgataaagat tacgggatgg ggcgaaactg gtatctgttc
      541 gaaaagggcc gtaaatggtc ttacagggcg attcgtcagg gctggccagc attctcaccg
      601 tggcttgatg cagtgattca gcgtgtcgaa atgtacaacg catcgcttcc cgttccgctt
      661 tctccggctg aatgtcgggc tattggcaag agtattgcga aatacaccta ccgcaaattc
      721 tctcctgaag gcttttccgc ggtacaggct gctcgaggtc gtaagggcgg taatgcaaat
      781 tcatcagaaa atcaggctat taaaggtcag aaatcaaagc gtgtagccgt tgccacatcg
      841 gcacgaactc tgaagccgtg ggtgacgtta gggatcagtc gtgccacata ctatcgaaaa
      901 ctaaaatgtg atccagatct cgcaaaatga gaccagataa caagccttat cagataacag
      961 cgcctgtagg cgtttttttg agcgggtagg tttggggtga tttcccgtgt ttcgtttggc
     1021 aatggtttta gcgtctgtgt gtgagtggtg gttgtgctcg ccgcagtctc aatgaccgag
     1081 cgtagcgagc gaatgagcga ggaagcacca gggaaccgga acgtgaacgg aggctcttac
     1141 gcactgtctt tggtgagtag ctctttcccg cgtttttccc attcctgcca ttttggatgg
     1201 ttgcgcggta gctctgcgat tcctgcgagt gcgcctacca gttcggcagc actaaacttt
     1261 ggttttccgg ttttgctgtc caccagtcct gccacaatca tgaggcctgc ggccttgtag
     1321 agttcatgat cccgcgcctt tcgttccgcc cttgcggctg ccttccgttc tgccgctatt
     1381 attgccgtta ccctggcttt tgctgcggct gctttctctg cggttttttc tgcccgtatc
     1441 agtgcggaca acgttttttc atccgtcgtt gttcggtttt ttttctctgc cagtaacaca
     1501 agtaatcttt gctgctctga cggtgatttc agtccgttga tataggcaat ttttgcactt
     1561 aaccactctt cacgatttgt cattcttacc tctgcacttt tgccgttaat gtgagttgtt
     1621 attgtgcata atatcacctt gtctgcctgc gtgtgagacc ttaaaatcat ccctgattaa
     1681 ttcagggatg cgcacttaga cgtttctctc cttcgtcgag aaacagtgcg ctcctgcgga
     1741 gggcttaacg gcagatggca agctaccatt gtacagttaa aactggagca aaaggcgtag
     1801 ccttaaaaca tgctgattat atttctagat ccggcgaata taagaactac aaatcgcggg
     1861 aggatctgga attttcgtca tccggtaaca tgccatcatg ggcgaagaaa aatcccgcag
     1921 agctatggaa agcagcagat gaatttgaac gaaaaaacgg gacggcatac cgtgaaattg
     1981 agatcgcatt accgcgagaa ctgacacgcg aacaacggat agaacttgtt gaagatttcg
     2041 tgcaaaagga gcttggtgat cgccatgcct atcagtacgc gatccacaat ccgccaggtg
     2101 caatcgacgg aaaggaacaa ccacacgcac atatcatgtt ttgcgagcgg attaatgatg
     2161 gtattgaacg cgatccgcag cagtttttta aacgtgccaa cagcaaatca ccggagcggg
     2221 gaggtgcaaa aaaggcacgc tttggtgaga caccacaaga gcgaaaatca gccttggttg
     2281 cgctacgttc tcactgggct gatgtgcaga atgaacacct tgcgcggcac ggccatcagt
     2341 cgcgcgttga tcatcgttca ctgaaagaac agggtatcaa gcgcacaccg gaagttcatc
     2401 ttggtcccgt tcgtgttgct gttatgaatg ctgatcaggt ttgtgcaatt ctggcacgga
     2461 gaaacgcgga acgggagaag ctagaagcag agcaggaacg ggacagcatc attgacctta
     2521 aaacgacctt gaaggaagcg ttagctgaac gggataacat accaccaagc ctggatgagc
     2581 ttggggcaga attgaaggcg tttgttgaaa gctcgtttga tgaactcaat gaggtaatgc
     2641 agcttaattc attgattaac ggtgcgctgg actcaatgat gaagcaattc caggtggaag
     2701 aggagcggaa gttgcaacag gaacgactaa ttgaagccga aaagcaaaga gacctggaga
     2761 gggaaagaga aagagtgcgc cagcgtgcgt attcctcacc agcaccatca cgttcacgtg
     2821 attatggtat gagccgttaa gcactggagg tttttatttt atgcaattgg atgaacattc
     2881 aagaaaaatt gctgctcttg ttgcgtataa tgataaacaa ataaaagaaa tgaacaggct
     2941 aattactctg cttaatgaaa gagtgaatga cttaaatacc tttacaagta ctcttgaacg
     3001 tgaaggtaaa gttgtttctg gaatttctta ttcctttagg gatagtgtgt ctaatgttaa
     3061 attttatatt aataaaggaa tggatgaggc atcttgtaaa ttacagaaat cagtctcaga
     3121 tacactaacg tcattactcc gcgaaaaatt atctttcact ctcaatgatg taaagaaaga
     3181 gtgggttgat ttcgaggagc aaacaagtaa agagataaag gaatcattaa agcagacgac
     3241 cagagaggcc gaagttgcga caggtataat tagaaaaaca atggagaagt atacagtaac
     3301 aaggattgtc gaaaaggtaa ttgtgttgat tgtattattt ttattgctaa tgatcgctcc
     3361 tgttttctat gctgaatatc tcaaaatgaa tattagttcg ctaatggaag aacagaaaaa
     3421 acatgaatcc atgttaaaag aatggaaaga aaaagctcca ttggccgagt tctcgaagtg
     3481 tggagattat cgtaaagcat gcgtgttagt tgatgacgaa agcggatatt attttaatga
     3541 acaatcacca aataaaaaat atgccatact gaaatagtgt taagtaactc atgccgtctt
     3601 atgactaagg ctgcatgagt ataaaaacgg cgtttcacgt aaaaataaaa taaatacctg
     3661 tacctaatat aaaaatggaa ctacatatgc ttatgtatct tgagaatgat ggcgtcaatt
     3721 tatcccttat cgttaagcta atagctatgt aaataagatc tgttaggaat gatataaata
     3781 taaataaaac acccaatata aaaaagttta atgtgatatt tgtattatta tctataaagg
     3841 ttggtattaa cgcagcaaag aaaagatacg ccttggggtt taataatggt atcaaaaaag
     3901 gtttttgctc ttttctttgt ttgttttttt tattaattaa acccattaat cctatgtata
     3961 ttaaatagcc tccaccgaat atttttataa tgtgaaaatg ttgttctgtg ctggatgttg
     4021 aggataacgc gaaaagagat attgccatga cgatagtctc gccaattctt atgtatatac
     4081 ttgtttttat tgatgacttt aatccatgtg aaaaggcatt gtttataacc aatgcaacgc
     4141 caggccctat tgatatagtt tgcgataagg ttacgatagc aaatgataat aatgttgaat
     4201 attccatgtt tacttaccat gatatatttc gtgggagctt ttcatataca tattccatag
     4261 gaattgcagc tttcggtaat aaatttataa atgttgatat gtgttttagt gaattgctgg
     4321 cggcgattga gtaaaaattt ccgctattcc aatatattga tgcgtattta aaatgttgtt
     4381 taattgcgga aagcatatcg tcaacactaa cttcattcaa attcattgtg tttagtacga
     4441 tttccttttt ggtgttaatc tcatctttcg agaaatacct ttgtttgaat gaataatctt
     4501 tttggatttc tcttttttga tattcatcat gttctgaact atgtttttct gtaaatatga
     4561 aaataccatc attatttaat agccttttta cgtggtttat ttgcccagat ctgttaggtg
     4621 agtacatttg aaatgtggtg tcttctatta taatatcgaa tccttgatta aattgtttaa
     4681 gatttgaatt ttttagtctt tcctctaaca ggaaaaatgg agtgcaaata aaataagcgt
     4741 tttcacttga gccatactta aaaaatgcat gttcattttc ttttgttgga ctggttgtta
     4801 atgtttgtat gtttcctttt gataattctg aaatggttct tgccattgcg ccctcagcca
     4861 taccaagaca ccatgtgttt aattttttgt ttagcgtgat tgcgtatttt attactgttg
     4921 ttcctaatct gcactcttct tccttgctgt atggtatact gcaaaaataa tgattaacga
     4981 aagggccgct gttttttgtg aggtgtttgg caaacttaat gtaatcataa gaatgaaaaa
     5041 gccgatcatc tatttctact agtctaaaag gtttgtgttt ttcccctgat gcagttgatg
     5101 agaaaaattc tgccatgccg tttattctcg gagcggaaat acattcattt ataaaattat
     5161 tcattttcct atcctctggt ttgatttttg gaatttgttg ttatgactct tcaatgctaa
     5221 ttctcttgta agctttttta cacgccataa acacgattat gatgttttat attgtcgata
     5281 tttcgttgtc cagactggat atgtttggaa atttgttttc atgcgggtta gttcagctgg
     5341 ctttctggat gagaaagttt gctgttttga ccagttcgcg cttctgaagg ggtgaaaccg
     5401 atcattaatc gcttttgtgc atagttatgc aggcccctaa aaacgattct gacgcgtttt
     5461 ttgtgttttc cctaggttta tcttgtcttt ttgagttttt tgcgtcagaa agcgattgag
     5521 agcgttttag agggtacgta caagaggagt tatggtaaat gggtctggtt ttcgggaagg
     5581 atcgacagga tttgccgttg ggtgtagtgt aaccaactga aaaacaaacg cccctgaaat
     5641 tcgtgccgat ccgccaagac tgtcacgaaa attcaagggg cgtgtgggtc gtaacacacg
     5701 gaggaaatcc taacac
//
