LOCUS       NZ_CP080559             3125 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Staphylococcus aureus strain HL17078 plasmid pHL17078_3, complete
            sequence.
ACCESSION   NZ_CP080559
VERSION     NZ_CP080559.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17301232
            Assembly: GCF_019551175.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Kim,J.-M., Chung,S.H. and Kim,J.-S.
  TITLE     Whole genome sequence of MRSA HL17078
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Kim,J.-M., Chung,S.H. and Kim,J.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2021) Laboratory Medicine, Hallym University
            College of Medicine, 150 Seongan-ro, Gangdong-gu, Seoul 05355, South
            Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 13-APR-2020
            Assembly Method                   :: SPAdes v. 3.14.0
            Assembly Name                     :: HL17078
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 515x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 05:34:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,952
            Genes (coding)                    :: 2,866
            CDSs (with protein)               :: 2,866
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 47 of 86
            Pseudo Genes (incomplete)         :: 43 of 86
            Pseudo Genes (internal stop)      :: 14 of 86
            Pseudo Genes (multiple problems)  :: 17 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080559.1.
            Annotation performed at Hallym University College of Medicine on
            July 30, 2021 using the NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP) version 2021-01-11.build5132.  Annotation modified by
            submitter.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="HL17078"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pHL17078_3"
                     /geo_loc_name="South Korea:Seoul"
                     /lat_lon="37.5362 N 127.1356 E"
                     /collection_date="2015"
                     /collected_by="Kandong Sacred Hospital"
     gene            1..582
                     /locus_tag="JMO10_RS15120"
                     /old_locus_tag="JMO10_003025"
     CDS             1..582
                     /locus_tag="JMO10_RS15120"
                     /old_locus_tag="JMO10_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(908..1096)
                     /locus_tag="JMO10_RS15125"
                     /old_locus_tag="JMO10_003026"
     CDS             complement(908..1096)
                     /locus_tag="JMO10_RS15125"
                     /old_locus_tag="JMO10_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            complement(1679..2674)
                     /locus_tag="JMO10_RS15130"
                     /old_locus_tag="JMO10_003027"
     CDS             complement(1679..2674)
                     /locus_tag="JMO10_RS15130"
                     /old_locus_tag="JMO10_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     Typing          complement(1445..1609)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(1680..2674)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaatgcaa ttcaaaacag tatatcacta agaaagattt tagtagtatc tttaagtatt
       61 ttaaccatac tttcaatggt cttggatttt aatttcaaag aagctcaagc ccaaaacaaa
      121 aataacattg cagataaaaa cgttgaaact ttaaacgaaa aagaaattga aaaagaacta
      181 aaatacatat atggcaaaat tattatttta gataaagacg gaacagctaa agatgttaat
      241 ctagaaaatg ccaaatctcg atatggatat gttcctgaag gattccaaaa actaaaaaac
      301 gacatagaga ataaaaagaa aactagttca atatcaccta gagcagttgg tgggaactac
      361 aaaaatagcg gtgactgttt ctattctgaa gttttaaact catatggaga acttttaact
      421 ggaaacataa tcacagcagt ttttgaagat gttaaagcca aaaacttaaa gggcgtagca
      481 aaaaaattag ctaaaattgg gataaaagga aacctagctg gaatcgcagc tactatggtt
      541 tcgaaggatg tacaatgtaa tcttaaatac gggttacttt agatactatt tattccaatt
      601 gctttattga cgttgagcct cggaaccctt aacaatccca aaacttgtcg aatggtcggc
      661 ttaatagctc acgctatgcc gacattcgtc tgcaagttta gttaagggtt cttctcaaca
      721 tcaataaatt ttctcggcat aaatgcgtcg tctatttttt attatcttca tgataatcat
      781 atttttcttc catctcgtca aaagcatcat ctttatagaa aaacaaaaag taagcaacaa
      841 caccaatagg aataaaaaaa cagtgtgaaa acaagaagaa actcgtttca aaatcccctc
      901 aaatattcta attattcttt ttgaaattca taaccttaac aaccaaataa atagcattta
      961 ttcccatcaa aataacatac ggaattaata tatataaatt ttccaaatga gatataaaaa
     1021 ttaatccaag taaaaagaaa acatttaaaa tagttgctat aacgtaacct tcatctaaca
     1081 ctgtgttttt attcaaaata aacactcctt ttttaaaaaa ctttatcaca agacttactc
     1141 aaattataaa tacctttatt ttgagtttta agggggtatt ttaaaggttt agggggtatc
     1201 atataggttt ttaacttaaa aatatataca agctcttaaa acgcaaatat gagccaaata
     1261 aatatatggt aatttcacaa acaaaaattt cagcaaaacc agtgactaat tttttaacac
     1321 tgcccattta catgcaaatt aaaaattagc ataaaatcct ttaaaacttc cacatgtttt
     1381 tctaaattcc tgcagggcgt tttttatcaa aaatcgagaa tttttaattt ttctctaaaa
     1441 actccgtaag agcataagga gaatttgcta tcattcaaaa atgataggtc tggcaaagcc
     1501 agaaattcca ggggttttaa ggtattttaa agtgatatca tacaaagctg tactgtctta
     1561 tttttgtgac acaatatatt gcgtttgtct tatttttgtg acactacata cagcatttgt
     1621 cacaaaaata agacagtact tttttataaa aaatcaacaa aaaagacatt agtcaacact
     1681 aatgtcttaa ataataattt tgcttttcga aattccaaat tgcggtaatt gaatgtgctt
     1741 tttcttcttc gtctgttgtt ttatcttcat cacttgcatt aatcaaatta ccatcttcga
     1801 catcgtctaa gtttaaaatt ttatgttttt gtttaagcaa tccaccataa cttaacatac
     1861 gttttcgata caaacctttt tctaaatcac ttacaatttc ttgatttttt tcatcatcat
     1921 cagttaaaaa atcagatgat ttaaccgaat attttgaggt ctctttgatt gccgattcaa
     1981 tgtctttatc gccttttcta ttcggtttga tcgctttaac attagcaaca ggtcgatagt
     2041 caacttgtaa tgctctttgc cataaattaa cccattcttc ttgagttata taattctctt
     2101 tttttctaaa atatgcattt tcaacacata acaaaacatg catgtgctga ttataactac
     2161 cgtcattttt attaacggta acttctgttg aacgcataaa tccaacaaga ttttgtttaa
     2221 cctttttata tctactcaac ctatcaaatg ctttagttag atgcttcaaa ctttgttcta
     2281 aagtatctcc atctatcgca ttttttgttg aaagtgttaa aaacaaccaa cgtgcttttg
     2341 gcttttcctt aattactttt tcaatcactt tttgagcttg ataactattt ttcatagcac
     2401 gtctccaatt acaaaccgga cataattttg atttacaaaa ccatgtctta tgtaacttca
     2461 aatagccttc atcagttggc ttaaattcta aaatattacc acattgtttt acattaaaag
     2521 cctttttgat ttttaaaatt tctagtatat ctgcatagct tacattatct attttctttt
     2581 ctctccatgg gcgttgtttc ccacttttcg tcatatcttt taacgtttta ttatcttgat
     2641 tttcggttat acttctagta gtattatatt gcatataaaa agacccccag tattatttaa
     2701 gattcgacac cttaataata taactggggt tttttattgt caaattttcc tttcacgcac
     2761 aaaaacacgt ttaaacactg taatatcaac agttacagct atatatataa aatcgagtta
     2821 tttctatata gtatcaagac aagaagaaac tcgttcacac tcgtttcaaa aaacaaccta
     2881 ttccttcttc tttttatgac cctctaaacc taaataaatt aatgtgaaaa ccaatgaata
     2941 aataaaactt tctaaaaagt caaaaggatt atcaaataaa atcgaattaa caaaattaaa
     3001 aattaaaaat acagataata aaataatcaa aaagtaaaaa aacttattca tattaaactc
     3061 ctttgttttt atatgttaat attatattga attcatttaa ataacaaaac aagggggcat
     3121 ttaca
//
