LOCUS       NZ_CP080555             6118 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Staphylococcus aureus strain HL18380 plasmid pHL18380_2, complete
            sequence.
ACCESSION   NZ_CP080555
VERSION     NZ_CP080555.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17301233
            Assembly: GCF_019551235.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 6118)
  AUTHORS   Kim,J.-M., Chung,S.H. and Kim,J.-S.
  TITLE     Whole genome sequence of MRSA HL18380
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6118)
  AUTHORS   Kim,J.-M., Chung,S.H. and Kim,J.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2021) Laboratory Medicine, Hallym University
            College of Medicine, 150 Seongan-ro, Gangdong-gu, Seoul 05355, South
            Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 22-APR-2020
            Assembly Method                   :: SPAdes v. 3.14.0
            Assembly Name                     :: HL18380
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 607x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 05:31:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,988
            CDSs (total)                      :: 2,906
            Genes (coding)                    :: 2,822
            CDSs (with protein)               :: 2,822
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 47 of 84
            Pseudo Genes (incomplete)         :: 40 of 84
            Pseudo Genes (internal stop)      :: 15 of 84
            Pseudo Genes (multiple problems)  :: 17 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080555.1.
            Annotation performed at Hallym University College of Medicine on
            July 30, 2021 using the NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP) version 2021-01-11.build5132.  Annotation modified by
            submitter.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6118
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="HL18380"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pHL18380_2"
                     /geo_loc_name="South Korea:Seoul"
                     /lat_lon="37.5362 N 127.1357 E"
                     /collection_date="2016"
                     /collected_by="Kandong Sacred Hospital"
     gene            255..1247
                     /locus_tag="JMO11_RS14885"
                     /old_locus_tag="JMO11_002972"
                     /pseudo=""
     CDS             255..1247
                     /locus_tag="JMO11_RS14885"
                     /old_locus_tag="JMO11_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            1826..2013
                     /locus_tag="JMO11_RS15010"
                     /pseudo=""
     CDS             1826..2013
                     /locus_tag="JMO11_RS15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(2339..2920)
                     /locus_tag="JMO11_RS14890"
                     /old_locus_tag="JMO11_002973"
     CDS             complement(2339..2920)
                     /locus_tag="JMO11_RS14890"
                     /old_locus_tag="JMO11_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            3372..4367
                     /locus_tag="JMO11_RS14895"
                     /old_locus_tag="JMO11_002974"
     CDS             3372..4367
                     /locus_tag="JMO11_RS14895"
                     /old_locus_tag="JMO11_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            4950..5138
                     /locus_tag="JMO11_RS14900"
                     /old_locus_tag="JMO11_002975"
     CDS             4950..5138
                     /locus_tag="JMO11_RS14900"
                     /old_locus_tag="JMO11_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            complement(5463..6044)
                     /locus_tag="JMO11_RS14905"
                     /old_locus_tag="JMO11_002976"
     CDS             complement(5463..6044)
                     /locus_tag="JMO11_RS14905"
                     /old_locus_tag="JMO11_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     Typing          1315..1479
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          4438..4602
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          256..1247
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.298"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3373..4367
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaataagt ttttttactt tttgattatt ttattatctg tatttttaat ttttaatttt
       61 gttaattcga ttttatttga taatcctttt gactttttag aaagttttat ttattcattg
      121 gttttcacat taatttattt aggtttagag ggtcataaaa agaagaagga ataggttgtt
      181 tttattttga caataaaaac cccagttata ttattaaggt gtcgaatctt aaataatact
      241 gggggtcttt ttatatgcaa tataatacta ctagaagtat aaccgaaaat caagataata
      301 aaacgttaaa agatatgacg aaaagtggga aacaacgccc atggagagaa aagaaaatag
      361 ataatgtaag ctatgcagat atactagaat ttttaaaaat caaaaaaggc tttaatgtaa
      421 aacaatgtgg taatatttta gaatttaagc caactgatga aggctatttg agttacataa
      481 gacatggttt tgtaaatcaa aattatgtcc ggtttgtaat tggagacgtg ctatgaaaaa
      541 tagttatcaa gctcaaaaag tgattgaaaa agtaattaag gaaaagccaa aagcacgttg
      601 gttgttttta acactttcaa caaaaatgcg atagatggag atactttaga acaaagtttg
      661 aagcatctaa ctaaagcatt tgataggttg agtagatata aaaaggttaa acaaaatctt
      721 gttggattta tgcgttcaac agaagttacc gttaataaaa atgacggtag ttataatcag
      781 cacatgcatg ttttgttatg tgttgaaaat gcatatttta gaaaaaaaga gaattatata
      841 actcaagaag aatgggttaa tttatggcaa agagcattac aagttgacta tcgacctgtt
      901 gctaatgtta aagcgatcaa accgaataga aaaggcgata aagacattga atcggcaatc
      961 aaagagacct caaaatattc ggttaaatca tctgattttt taactgatga tgatgaaaaa
     1021 atcaagaaat tgtaagtgat ttagaaaaag gtttgtatcg aaaacgtatg ttaagttatg
     1081 gtggattgct taaacaaaaa cataaaattt taaacttaga cgatgtcgaa gatggtaatt
     1141 tgattaatgc aagtgatgaa gataaaacaa cagacgaaga agaaaaagca cattcaatta
     1201 ccgcaatttg gaatttcgaa aagcaaaatt attatttaag acattagtgt tgactaatgt
     1261 ctttttgttg atttttataa aaagtactgt cttatttttg tgacaaatgc tgtatgtagt
     1321 gtcacaaaaa taagacaaac gcaatatatt gtgtcacaaa aataagacag tacagctttg
     1381 tatgatatca ctttaaaata ccttaaaacc cctggaattt ctggctttgc cagacctatc
     1441 atttttgaat gatagcaaat tctccttatg ctcttacgga gtttttagag aaaaattaaa
     1501 aattctcgat ttttgataaa aaacgccctg caggaattta gaaaaacatg tggaagtttt
     1561 aaaggatttt atgctaattt ttaatttgca tgtaaatggg cagtgttaaa aaattagtca
     1621 ctggttttgc tgaaattttt gtttgtgaaa ttaccatata tttatttggc tcatatttgc
     1681 gttttaagag cttgtatata tttttaagtt aaaaacctat atgatacccc taaaccttta
     1741 aaataccccc ttaaaactca aaataaaggt atttataatt tgagtaagtc ttgtgataaa
     1801 gttttttaaa aaaggagtgt ttattttgaa taaaaacaca gtgttagatg aaggttacgt
     1861 ttagcaacta ttttaaatgt tttcttttta cttggattaa tttttatatc tcatttggaa
     1921 aatttatata tattaattcc gtatgttatt ttgatgggaa taaatgctat ttatttggtt
     1981 gttaaggtta tgaatttcaa aaagaataat tagaatattt gaggggattt tgaaacgagt
     2041 ttcttcttgt tttcacactg tttttttatt cctattggtg ttgttgctta ctttttgttt
     2101 ttctataaag atgatgcttt tgacgagatg gaagaaaaat atgattatca tgaagataat
     2161 aaaaaataga cgacgcattt atgccgagaa aatttattga tgttgagaag aacccttaac
     2221 taaacttgca gacgaatgtc ggcatagcgt gagctattaa gccgaccatt cgacaagttt
     2281 tgggattgtt aagggttccg aggctcaacg tcaataaagc aattggaata aatagtatct
     2341 aaagtaaccc gtatttaaga ttacattgta catccttcga aaccatagta gctgcgattc
     2401 cagctaggtt tccttttatc ccaattttag ctaatttttt tgctacgccc tttaagtttt
     2461 tggctttaac atcttcaaaa actgctgtga ttatgtttcc agttaaaagt tctccatatg
     2521 agtttaaaac ttcagaatag aaacagtcac cgctattttt gtagttccca ccaactgctc
     2581 taggtgatat tgaactagtt ttctttttat tctctatgtc gttttttagt ttttggaatc
     2641 cttcaggaac atatccatat cgagatttgg cattttctag attaacatct ttagctgttc
     2701 cgtctttatc taaaataata attttgccat atatgtattt tagttctttt tcaatttctt
     2761 tttcgtttaa agtttcaacg tttttatctg caatgttatt tttgttttgg gcttgagctt
     2821 ctttgaaatt aaaatccaag accattgaaa gtatggttaa aatacttaaa gatactacta
     2881 aaatctttct tagtgatata ctgttttgaa ttgcattcat tgtaaatgcc cccttgtttt
     2941 gttatttaaa tgaattcaat ataatattaa catataaaaa caaaggagtt taatatgaat
     3001 aagttttttt actttttgat tattttatta tctgtatttt taatttttaa ttttgttaat
     3061 tcgattttat ttgataatcc ttttgacttt ttagaaagtt ttatttattc attggttttc
     3121 acattaattt atttaggttt agagggtcat aaaaagaaga aggaataggt tgttttttga
     3181 aacgagtgtg aacgagtttc ttcttgtctt gatactatat agaaataact cgattttata
     3241 tatatagctg taactgttga tattacagtg tttaaacgtg tttttgtgcg tgaaaggaaa
     3301 atttgacaat aaaaaacccc agttatatta ttaaggtgtc gaatcttaaa taatactggg
     3361 ggtcttttta tatgcaatat aatactacta gaagtataac cgaaaatcaa gataataaaa
     3421 cgttaaaaga tatgacgaaa agtgggaaac aacgcccatg gagagaaaag aaaatagata
     3481 atgtaagcta tgcagatata ctagaaattt taaaaatcaa aaaggctttt aatgtaaaac
     3541 aatgtggtaa tattttagaa tttaagccaa ctgatgaagg ctatttgaag ttacataaga
     3601 catggttttg taaatcaaaa ttatgtccgg tttgtaattg gagacgtgct atgaaaaata
     3661 gttatcaagc tcaaaaagtg attgaaaaag taattaagga aaagccaaaa gcacgttggt
     3721 tgtttttaac actttcaaca aaaaatgcga tagatggaga tactttagaa caaagtttga
     3781 agcatctaac taaagcattt gataggttga gtagatataa aaaggttaaa caaaatcttg
     3841 ttggatttat gcgttcaaca gaagttaccg ttaataaaaa tgacggtagt tataatcagc
     3901 acatgcatgt tttgttatgt gttgaaaatg catattttag aaaaaaagag aattatataa
     3961 ctcaagaaga atgggttaat ttatggcaaa gagcattaca agttgactat cgacctgttg
     4021 ctaatgttaa agcgatcaaa ccgaatagaa aaggcgataa agacattgaa tcggcaatca
     4081 aagagacctc aaaatattcg gttaaatcat ctgatttttt aactgatgat gatgaaaaaa
     4141 atcaagaaat tgtaagtgat ttagaaaaag gtttgtatcg aaaacgtatg ttaagttatg
     4201 gtggattgct taaacaaaaa cataaaattt taaacttaga cgatgtcgaa gatggtaatt
     4261 tgattaatgc aagtgatgaa gataaaacaa cagacgaaga agaaaaagca cattcaatta
     4321 ccgcaatttg gaatttcgaa aagcaaaatt attatttaag acattagtgt tgactaatgt
     4381 cttttttgtt gattttttat aaaaaagtac tgtcttattt ttgtgacaaa tgctgtatgt
     4441 agtgtcacaa aaataagaca aacgcaatat attgtgtcac aaaaataaga cagtacagct
     4501 ttgtatgata tcactttaaa ataccttaaa acccctggaa tttctggctt tgccagacct
     4561 atcatttttg aatgatagca aattctcctt atgctcttac ggagttttta gagaaaaatt
     4621 aaaaattctc gatttttgat aaaaaacgcc ctgcaggaat ttagaaaaac atgtggaagt
     4681 tttaaaggat tttatgctaa tttttaattt gcatgtaaat gggcagtgtt aaaaaattag
     4741 tcactggttt tgctgaaatt tttgtttgtg aaattaccat atatttattt ggctcatatt
     4801 tgcgttttaa gagcttgtat atatttttaa gttaaaaacc tatatgatac cccctaaacc
     4861 tttaaaatac ccccttaaaa ctcaaaataa aggtatttat aatttgagta agtcttgtga
     4921 taaagttttt taaaaaagga gtgtttattt tgaataaaaa cacagtgtta gatgaaggtt
     4981 acgttatagc aactatttta aatgttttct ttttacttgg attaattttt atatctcatt
     5041 tggaaaattt atatatatta attccgtatg ttattttgat gggaataaat gctatttatt
     5101 tggttgttaa ggttatgaat ttcaaaaaga ataattagaa tatttgaggg gattttgaaa
     5161 cgagtttctt cttgttttca cactgttttt ttattcctat tggtgttgtt gcttactttt
     5221 tgtttttcta taaagatgat gcttttgacg agatggaaga aaaatatgat tatcatgaag
     5281 ataataaaaa atagacgacg catttatgcc gagaaaattt attgatgttg agaagaaccc
     5341 ttaactaaac ttgcagacga atgtcggcat agcgtgagct attaagccga ccattcgaca
     5401 agttttggga ttgttaaggt tccgaggctc aacgtcaata aagcaattgg aataaatagt
     5461 atctaaagta acccgtattt aagattacat tgtacatcct tcgaaaccat agtagctgcg
     5521 attccagcta ggtttccttt tatcccaatt ttagctaatt tttttgctac gccctttaag
     5581 tttttggctt taacatcttc aaaaactgct gtgattatgt ttccagttaa aagttctcca
     5641 tatgagttta aaacttcaga atagaaacag tcaccgctat ttttgtagtt cccaccaact
     5701 gctctaggtg atattgaact agttttcttt ttattctcta tgtcgttttt tagtttttgg
     5761 aatccttcag gaacatatcc atatcgagat ttggcatttt ctagattaac atctttagct
     5821 gttccgtctt tatctaaaat aataattttg ccatatatgt attttagttc tttttcaatt
     5881 tctttttcgt ttaaagtttc aacgttttta tctgcaatgt tatttttgtt ttgggcttga
     5941 gcttctttga aattaaaatc caagaccatt gaaagtatgg ttaaaatact taaagatact
     6001 actaaaatct ttcttagtga tatactgttt tgaattgcat tcattgtaaa tgcccccttg
     6061 ttttgttatt taaatgaatt caatataata ttaacatata aaaacaaagg agtttaat
//
