LOCUS       NZ_CP080477             2020 bp    DNA     circular CON 15-APR-2024
DEFINITION  Enterobacter hormaechei strain ECC59 plasmid pECC59-7, complete
            sequence.
ACCESSION   NZ_CP080477
VERSION     NZ_CP080477.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20500401
            Assembly: GCF_019458525.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Zhou,K.
  TITLE     Carbapenem- and colistin-resistant Enterobacter hormaechei
            co-producing NDM-1 and MCR-9
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Zhou,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2021) Institute of Respiratory Diseases, Shenzhen
            People's Hospital, Dongmenbeilu, Shenzhen 518020, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 110.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019458525.1-RS_2024_04_14
            Annotation Date                   :: 04/14/2024 21:40:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,080
            CDSs (total)                      :: 4,966
            Genes (coding)                    :: 4,809
            CDSs (with protein)               :: 4,809
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 57 of 157
            Pseudo Genes (incomplete)         :: 90 of 157
            Pseudo Genes (internal stop)      :: 30 of 157
            Pseudo Genes (multiple problems)  :: 18 of 157
            Pseudo Genes (short protein)      :: 1 of 157
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080477.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="ECC59"
                     /isolation_source="Broncho-alveolar lavage"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pECC59-7"
                     /geo_loc_name="China: Guangdong"
                     /lat_lon="22.38 N 114.05 E"
                     /collection_date="2017"
                     /collected_by="Shenzhen People's Hospital"
     gene            complement(149..406)
                     /locus_tag="K0823_RS25310"
                     /old_locus_tag="K0823_25305"
                     /old_locus_tag="K0823_25310"
     CDS             complement(149..406)
                     /locus_tag="K0823_RS25310"
                     /old_locus_tag="K0823_25305"
                     /old_locus_tag="K0823_25310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113991409.1"
                     /translation="MKLITLLSKHFDVEVADFEMEDETLTGAIWIYEKGQDSEPVVILK
                     PTEQPGNWKVGNIYSALPHDAILSEQQLKELVKAGKVLKG"
                     /name="hypothetical protein"
     gene            1615..1872
                     /locus_tag="K0823_RS25305"
                     /old_locus_tag="K0823_25305"
                     /old_locus_tag="K0823_25310"
     CDS             1615..1872
                     /locus_tag="K0823_RS25305"
                     /old_locus_tag="K0823_25305"
                     /old_locus_tag="K0823_25310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113991409.1"
                     /translation="MKLITLLSKHFDVEVADFEMEDETLTGAIWIYEKGQDSEPVVILK
                     PTEQPGNWKVGNIYSALPHDAILSEQQLKELVKAGKVLKG"
                     /name="hypothetical protein"
ORIGIN
        1 gtaatcaggc acatcaggga aaaagtagaa gtataaccaa aaggcgagtt ttaccttatg
       61 cctgagctgg aaccataatg gcagaccaga agataacaga gtatagatta gtataatata
      121 gtctatactc tttgtttttg gtagggcgtt agcccttcag cacctttccg gcctttacca
      181 gttcctttag ctgttgttct gaaaggatgg catcatgagg aagggcagag tagatgtttc
      241 caactttcca gtttcccggc tgttcggttg gtttcaggat cacaactggt tcagagtctt
      301 gccccttctc ataaatccag attgctccag taagggtttc atcttccatc tcaaaatcag
      361 ctacttcaac gtcgaagtgt ttagacagta gggtaatcag tttcatgctc gatgcttcct
      421 gttatcgttg gattggtaac attgtagctc aaatgaacca caactagcaa ttacaatata
      481 gactatacta atctatacta ctgttaattt gagatcaggt atcaaatagg gtatgggtta
      541 ctatgggttt tagatagata cccataaacc caaaccaaca aaacccaaaa cccttaattg
      601 cttccaacac cgccattagc tacactgttc tacctcgatc ctgtccacca tacaaagctg
      661 tccaccctgc taattggact actggacaag caaatggaca gttttaaacc ctaattagct
      721 gttgtccact ggacagatca acgtgtccac tataccaaat ggacagatta caagagataa
      781 agccttatat atcaaggctt tgcggctagt gtccactttg tccagtctgt ccacccacta
      841 ccagacacac atactggaca gccaaaaaat atagctgtcc actttgtcca gcctgtccac
      901 ccacataaaa ataaccaacc ggatcatata tggatcgcta atatgggtta tgggctggcg
      961 ctatgggttg ggttctatac tcccctaatt tccctttatg ggatgggcta tagcccatcc
     1021 cataaaggga aattagggga gtatagaacc caacccatag cgccagccca taacccatat
     1081 tagcgatcca tatatgatcc ggttggttat ttttatgtgg gtggacaggc tggacaaagt
     1141 ggacagctat attttttggc tgtccagtat gtgtgtctgg tagtgggtgg acagactgga
     1201 caaagtggac actagccgca aagccttgat atataaggct ttatctcttg taatctgtcc
     1261 atttggtata gtggacacgt tgatctgtcc agtggacaac agctaattag ggtttaaaac
     1321 tgtccatttg cttgtccagt agtccaatta gcagggtgga cagctttgta tggtggacag
     1381 gatcgaggta gaacagtgta gctaatggcg gtgttggaag caattaaggg ttttgggttt
     1441 tgttggtttg ggtttatggg tatctatcta aaacccatag taacccatac cctatttgat
     1501 acctgatctc aaattaacag tagtatagat tagtatagtc tatattgtaa ttgctagttg
     1561 tggttcattt gagctacaat gttaccaatc caacgataac aggaagcatc gagcatgaaa
     1621 ctgattaccc tactgtctaa acacttcgac gttgaagtag ctgattttga gatggaagat
     1681 gaaaccctta ctggagcaat ctggatttat gagaaggggc aagactctga accagttgtg
     1741 atcctgaaac caaccgaaca gccgggaaac tggaaagttg gaaacatcta ctctgccctt
     1801 cctcatgatg ccatcctttc agaacaacag ctaaaggaac tggtaaaggc cggaaaggtg
     1861 ctgaagggct aacgccctac caaaaacaaa gagtatagac tatattatac taatctatac
     1921 tctgttatct tctggtctgc cattatggtt ccagctcagg cataaggtaa aactcgcctt
     1981 ttggttatac ttctactttt tccctgatgt gcctgattac
//
