LOCUS       NZ_CP080357             4627 bp    DNA     linear   CON 04-JUN-2024
DEFINITION  Klebsiella pneumoniae strain K191663 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP080357
VERSION     NZ_CP080357.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20422817
            Assembly: GCF_019443545.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4627)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     ST16 K. pneumoniae in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4627)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) foundation medicine, Southwest medical
            university, Longmatan District, Luzhou, Sichuan 646607, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.04; unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019443545.1-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:14:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,768
            CDSs (total)                      :: 5,635
            Genes (coding)                    :: 5,506
            CDSs (with protein)               :: 5,506
            Genes (RNA)                       :: 133
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 59 of 129
            Pseudo Genes (incomplete)         :: 69 of 129
            Pseudo Genes (internal stop)      :: 12 of 129
            Pseudo Genes (multiple problems)  :: 11 of 129
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080357.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4627
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="K191663"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="China:wuxi"
                     /collection_date="2019-11-07"
     gene            complement(<1..357)
                     /locus_tag="K0P45_RS26550"
                     /old_locus_tag="K0P45_26535"
     CDS             complement(<1..357)
                     /locus_tag="K0P45_RS26550"
                     /old_locus_tag="K0P45_26535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_219903612.1"
                     /translation="MKNEIEFKFGDYAIIEQKRHGVPNEMFVHKVVGQLRSNTWVDVPV
                     SVPATETLHGEMEDICLCICCGIDETEVRRYRVKDMRRHSPVSLVADEKRGSTITLQAV
                     NELIRSLESAGELSI"
                     /name="hypothetical protein"
     gene            complement(354..647)
                     /locus_tag="K0P45_RS26555"
                     /old_locus_tag="K0P45_26540"
     CDS             complement(354..647)
                     /locus_tag="K0P45_RS26555"
                     /old_locus_tag="K0P45_26540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein ren"
                     /protein_id="WP_040182091.1"
                     /translation="MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGV
                     LVAEARVWRTVYYRLATEEEISGRKSTNQIFNECRQSPVMKRILAVYGRAQA"
                     /name="protein ren"
     gene            complement(644..1492)
                     /locus_tag="K0P45_RS26560"
                     /old_locus_tag="K0P45_26545"
     CDS             complement(644..1492)
                     /locus_tag="K0P45_RS26560"
                     /old_locus_tag="K0P45_26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004201118.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_040182092.1"
                     /translation="MNLDERITLVEKQLQELSQPALDIPNTEVIKQLVVCEKHGDYEQR
                     QRVSTGLVRLPGAPTSCPGCLKDELVFLRNEKAKTDDRTRTANVERLMLELKVPARFEA
                     CTLDNYQPVSEEAARALKVCRAYASRWPDRRKNGGGLVMCGKPGTGKNHLAYAIAKSVI
                     AEHQSPVVFTTALKIAREFKSTWSKTATRSEEDVIRFFTKPDLLIIDEVGIQFGSEAEK
                     MIMFEIINTRYERLKPTILISNLPKDELTQFIGERVIDRMNDGGGCTISFTWDSYRENR
                     S"
                     /name="ATP-binding protein"
     gene            complement(1489..2349)
                     /locus_tag="K0P45_RS26565"
                     /old_locus_tag="K0P45_26550"
     CDS             complement(1489..2349)
                     /locus_tag="K0P45_RS26565"
                     /old_locus_tag="K0P45_26550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004201117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_064172294.1"
                     /translation="MANTAEVINFPVPVVALQELRVADLDDGFTRIANELLEAVMRAGL
                     SQHQLLVFMAVMRKTYGFNKKSDWVSNEQLSELTGILPHKCSAAKSVLVKRGILTQTGR
                     VIGINKTVSEWSSLPVKGTEKKTYLKKVTLPESGKKSLPESGNAYYPNKVNTKDKHTKD
                     NKDNINNPPKSPRAVSFDALAVQLPDWLSAEIWSSWVAYRRDLKKPIKSQQTVTQAINL
                     LDRCRLNGYSPEEIINQSIANGWQGLFEPKGARPQRRQESRVTERFADKDYGKTEIPDW
                     MRDQQ"
                     /name="replication protein"
     gene            complement(2436..2756)
                     /locus_tag="K0P45_RS26570"
                     /old_locus_tag="K0P45_26555"
     CDS             complement(2436..2756)
                     /locus_tag="K0P45_RS26570"
                     /old_locus_tag="K0P45_26555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000426369.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WP_040181693.1"
                     /translation="MENAIARKLEPPILNPIEIEGILLNRLLSIGQKTFAEMRGVSEST
                     ISRRKSEGYYAEMAKEIAALGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLG
                     WD"
                     /name="CII family transcriptional regulator"
     gene            complement(2796..3017)
                     /locus_tag="K0P45_RS26575"
                     /old_locus_tag="K0P45_26560"
     CDS             complement(2796..3017)
                     /locus_tag="K0P45_RS26575"
                     /old_locus_tag="K0P45_26560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017693164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_040182097.1"
                     /translation="METLSDRVKKRRSELNLTQAGLAELSGTKQQTIQQVESGLTKRPR
                     KLIELATALQCEPRWLLFGEQGNKTNAA"
                     /name="helix-turn-helix domain-containing protein"
     gene            3120..3815
                     /locus_tag="K0P45_RS26580"
                     /old_locus_tag="K0P45_26565"
     CDS             3120..3815
                     /locus_tag="K0P45_RS26580"
                     /old_locus_tag="K0P45_26565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001434065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_029363661.1"
                     /translation="MNIADRVKLRRAELSLTQAELASLAKTSQQAIQQLEDGRTKRPRY
                     LPELAAALKCSVSWLLTGEHEMTSEIPPEKEWSQVDSWDKNTPLSEGEVEVPFLKDIEF
                     ACGDGRIQSDDHNGFKLRFSKATLRRVGANSDGSGVICFPATGDSMEPVIPDGTTVAVD
                     TNNKRIIDGKLYAIAQPGAGDEKLKRIKQLYRKPGGILVIRSFNREDEEAMEQDVEIIG
                     RVFWYSVLL"
                     /name="helix-turn-helix transcriptional regulator"
     gene            3835..4269
                     /locus_tag="K0P45_RS26585"
                     /old_locus_tag="K0P45_26570"
     CDS             3835..4269
                     /locus_tag="K0P45_RS26585"
                     /old_locus_tag="K0P45_26570"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_129111273.1"
                     /translation="MSFFSFLLGAFLAVTCCLFVFIWHKKQSTKKNLKQYQPVSIDSSV
                     KNAKTLLNAADHSYAVDNNALAAVWKSRGCKEHAEREGRIYTIKGSWAIKKKLIKPGVD
                     GFLNDIPLPRDCGCYMTYIYNLRSLPPSMLTPSAIKSLQK"
                     /name="hypothetical protein"
ORIGIN
        1 tatcgacagc tcgcctgccg actccagcga ccgaatgagc tcgtttactg cctgtaatgt
       61 gatagtagaa cccctctttt catcagccac caaagagaca ggagaatggc gccgcatatc
      121 cttgacgcga taacggcgaa cctcggtctc gtcaattccg cagcagatgc agagacaaat
      181 gtcctccatc tcaccatgca gcgtctcagt cgccggaaca ctaaccggaa catcaaccca
      241 ggtgttagag cgaagttgac caaccacctt atgaacaaac atctcgttag gtacgccgtg
      301 gcgtttctgc tcgatgattg cgtaatcacc aaatttgaat tcgatttcgt ttttcatgcc
      361 tgcgccctcc cgtagaccgc taaaattcgc ttcataaccg ggctctgccg gcactcgttg
      421 aaaatctgat tggtgctctt cctgcctgaa atttcttctt cggtggccag ccggtaataa
      481 accgtccgcc acacccgagc ttccgctacc agtaccccct gctttgccag gatattggca
      541 gcctggttga tgcaggtgtg cgtcattccg gaagccgcgg cgacatctgg agagctgcag
      601 gttttatgcg ttttcaggta gttcagaatt gcgtcttttc ctgtcatgac cggttctccc
      661 gatagctgtc ccaggtaaac gaaatcgtgc agccgccgcc gtcgttcatg cggtcgatga
      721 cgcgctcgcc gatgaactgc gtcagctcat cctttggtag gttgctgatc aggatcgtcg
      781 gcttcaggcg ctcgtagcgg gtgttgatga tttcaaacat gatcatcttc tcggcttcgc
      841 tgccgaactg aatgcctacc tcgtcgataa tcagcaggtc cggcttggtg aagaagcgga
      901 tcacgtcttc ctcggagcgg gtcgccgtct ttgaccaggt ggatttaaac tcccgggcga
      961 ttttcagcgc agtggtgaac acgaccgggc tctggtgctc tgcgataacg cttttcgcaa
     1021 ttgcataggc caggtggttt ttccccgtgc cgggtttgcc gcacataacc agtccgccgc
     1081 cgttcttccg gcgatctggc cagcggctgg catacgctcg gcagactttc agcgcccgcg
     1141 ctgcttcttc gctcaccggc tggtagttat ccagcgtgca ggcttcgaac cgggccggga
     1201 ccttgagctc aagcatcagg cgttcaacat tcgcagtgcg agttctgtca tccgtttttg
     1261 ccttctcgtt tcgcaggaaa acgagctcat ctttcaggca tcccgggcag cttgtcggcg
     1321 cccctggcag acggacaagg ccagttgata cgcgctggcg ttgctcatag tcgccgtgct
     1381 tttcgcagac cactaactgc ttaatgactt cggtgtttgg gatgtccagc gctggctgtg
     1441 acagctcctg cagctgtttt tcgaccaggg tgattctttc gtccaggttc attgctgatc
     1501 cctcatccag tccggaattt cggttttgcc gtagtctttg tcagcgaacc gttcagtgac
     1561 gcgggactcc tgccggcgct gcggtctggc gcctttcggc tcaaagagtc cctgccagcc
     1621 attcgcgatg ctctggttaa taatttcttc aggggagtaa ccgttcagtc tgcagcggtc
     1681 cagcaggttg atagcctggg tgaccgtctg ctgagacttg atcggctttt tcaggtcacg
     1741 acggtatgcc acccatgacg accagatttc tgcagaaagc cagtcaggca actgaacagc
     1801 taacgcatcg aacgaaaccg cccgggggga tttagggggg ttattaatat tgtctttatt
     1861 gtcttttgta tgtttgtctt ttgtgtttac cttattcggg taataggcgt tacctgattc
     1921 gggtaaactt ttcttacctg attcgggtaa tgttaccttt ttcaggtaag ttttcttttc
     1981 tgtacctttt acgggtaaag atgaccattc gctgaccgtt ttattaatcc cgataacacg
     2041 accggtttga gttaatatcc cccgcttaac caggacgctt tttgcagctg agcacttatg
     2101 cgggagaatg ccggtcagct ccgagagctg ctcgttactg acccagtcag atttcttgtt
     2161 gaagccgtat gttttgcgca tgacagccat gaacaccaaa agctgatgct gcgacagacc
     2221 cgcacgcatg acagcttcaa ggagctcatt ggcgatgcgc gtaaacccat cgtcgagatc
     2281 tgccacgcgc agctcctgta gtgccacgac aggcacaggg aaattgatta cctcggcagt
     2341 atttgccata attactcctg tgaattgatc cagttaattc gcgtagaaag ccgttagtgt
     2401 tcgagcactg cggctttcgc cttttctgcc cttcattagt cccatcccaa cggtcctggt
     2461 cggcaccgct ctgcacgtaa tccgatatct gccagcgttt ctactgactg caggtagtgg
     2521 cgggaaacca caaccgcttc tggcggaaca acctgcaggc ctaacgcagc aatctctttc
     2581 gccatctcgg cgtagtaccc ttcgctctta cggcgactaa tcgttgattc gctgacccct
     2641 cgcatttctg caaaagtctt ctggccaatg gacaaaagcc ggtttaacaa aatgccttca
     2701 atctcaattg ggttgagaat tggcggctct aactttcggg ctattgcatt ctccatctgt
     2761 gatacttcct ctggtggtgt ttgaaaggcc gccggttagg cggcattggt tttattccct
     2821 tgctctccaa aaagaagcca gcgtggctcg cactgaaggg cagtcgccag ctcaatgagc
     2881 ttgcgtgggc gttttgttaa tccggattca acttgctgaa tagtctgctg tttggttcca
     2941 gaaagctcag caagaccggc ctgggtcaaa ttaagttcac tgcggcgttt tttaacgcgg
     3001 tcagaaagag tttccatgat gcctccttta caaggttatt tgtattttat tgtcaaacaa
     3061 acttgtttgt caaatacctt gtttcttgta agcatgaggg atcggtttat gaggtggata
     3121 tgaatattgc ggacagagta aaacttaggc gtgcggagct atcattgacg caagcggagc
     3181 tggcttcact agctaaaacc tctcagcagg ccatacagca actcgaagac ggaaggacta
     3241 agcgcccaag atacttgccg gagctggcag cagctttaaa gtgctcagtt agctggctct
     3301 taactggtga gcatgaaatg accagtgaaa ttcctcccga aaaagaatgg tcccaagtcg
     3361 attcatggga caaaaatacc ccactaagtg agggcgaagt agaagtgcct tttttgaaag
     3421 atatcgaatt tgcctgtggg gatggccgca ttcaaagcga tgatcacaat ggctttaagt
     3481 tgaggttctc caaagcaact ttacgaagag ttggcgctaa cagcgatggt tcaggagtta
     3541 tctgcttccc agccactgga gacagtatgg agcctgttat tccagatgga acaacggttg
     3601 cagtagacac caataacaaa cggatcattg atggaaaact atatgctatc gcgcaaccag
     3661 gtgccggaga tgaaaagcta aagcggataa agcagttata ccgtaagcca ggtggaattc
     3721 ttgtgatacg cagcttcaac cgagaggacg aagaggcaat ggagcaagat gttgaaatca
     3781 taggaagggt tttctggtat tcagttttac tttaaccttt aaggtattgt aatcatgagt
     3841 tttttctctt ttttgcttgg ggcattctta gcagttacgt gttgcctgtt cgtttttatt
     3901 tggcataaaa aacagtccac aaaaaagaat ttaaaacagt atcaaccagt tagcatagac
     3961 tcttcggtta aaaatgcgaa aacgctactt aatgcggctg atcacagtta tgcagttgat
     4021 aacaatgccc ttgcggctgt atggaaatca aggggctgca aagagcatgc agaacgagag
     4081 ggtaggatct atacaattaa gggatcatgg gcgataaaga aaaaattgat aaagcccggg
     4141 gttgatggat ttcttaatga tataccgctt ccaagggatt gcgggtgcta tatgacttac
     4201 atttataacc ttcgcagcct tcccccttct atgcttaccc cttccgcaat aaaatccctg
     4261 caaaaataac cactatcact actgcaaagc ccgatgccgg gctttttttt cgcctgtaac
     4321 acaacatccc ttcctgaaac aagccaaaaa acaaatataa aaacaacaaa aacaaccact
     4381 tgattgttaa atacaacaaa atacaatttt atgtgtttac aagattgatt gtattttgta
     4441 tattcaactc atccaaacaa caccggcaac gccggacgta agtcaaacgc tcagctggcc
     4501 ggctttaagg caaaggtgaa gagatgatcc gcgaagaaga caagcctgca tggcgtaatt
     4561 tttggttaaa ggtcgttccg tttttggttg ctgttatcgc agttagctat ccgtgctggg
     4621 gtggcaa
//
