LOCUS       NZ_CP080355             5234 bp    DNA     linear   CON 04-JUN-2024
DEFINITION  Klebsiella pneumoniae strain K191663 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP080355
VERSION     NZ_CP080355.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20422817
            Assembly: GCF_019443545.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5234)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     ST16 K. pneumoniae in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5234)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) foundation medicine, Southwest medical
            university, Longmatan District, Luzhou, Sichuan 646607, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.04; unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019443545.1-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:14:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,768
            CDSs (total)                      :: 5,635
            Genes (coding)                    :: 5,506
            CDSs (with protein)               :: 5,506
            Genes (RNA)                       :: 133
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 59 of 129
            Pseudo Genes (incomplete)         :: 69 of 129
            Pseudo Genes (internal stop)      :: 12 of 129
            Pseudo Genes (multiple problems)  :: 11 of 129
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080355.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5234
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="K191663"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:wuxi"
                     /collection_date="2019-11-07"
     gene            complement(52..456)
                     /locus_tag="K0P45_RS26475"
                     /old_locus_tag="K0P45_26460"
     CDS             complement(52..456)
                     /locus_tag="K0P45_RS26475"
                     /old_locus_tag="K0P45_26460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019821692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="WP_085281039.1"
                     /translation="MAREHKVFISHAWAHHDELESLRRLIDARPYFNAEYSEVSRNEPI
                     NSTNAPYIKSVLKRKILDSNILIGLAGIYASHSSWMEWELDTALANGIPVIGVVPRGAQ
                     RISTMVSTRAVEVVRWNTESIIAAIRLHAR"
                     /name="TIR domain-containing protein"
     gene            743..1069
                     /locus_tag="K0P45_RS26480"
                     /old_locus_tag="K0P45_26465"
     CDS             743..1069
                     /locus_tag="K0P45_RS26480"
                     /old_locus_tag="K0P45_26465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_219903610.1"
                     /translation="MEKRTKEIKIRLTETEHQRLLDRCDRTHLAEWLRQLGLGEHTSRK
                     RRVPDVAPELLRQVSGIGNNLNQIARRLNQTNSLTPSERASLLVVLTSLDRQLGDLLEQ
                     NRDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1278..>1700
                     /locus_tag="K0P45_RS26485"
                     /old_locus_tag="K0P45_26470"
                     /pseudo=""
     CDS             1278..>1700
                     /locus_tag="K0P45_RS26485"
                     /old_locus_tag="K0P45_26470"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1747..2232
                     /locus_tag="K0P45_RS26490"
                     /old_locus_tag="K0P45_26475"
     CDS             1747..2232
                     /locus_tag="K0P45_RS26490"
                     /old_locus_tag="K0P45_26475"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_108490868.1"
                     /translation="MSEILNLAKGFEEKSKQQAQDTELSVKREFARLETSISAELQSSS
                     QSISNAIREQNGRLTGMIRTSVSAAMAWIFLCFALLIGILGGIIWFQGTIITSRLSEMD
                     SYSQQLESLKAKSGAGVTIYSDDKNRNTYLVVLPKQAHGVETYTSTTDNTVVKYTAK"
                     /name="MbeB family mobilization protein"
     gene            2302..2526
                     /locus_tag="K0P45_RS26495"
                     /old_locus_tag="K0P45_26480"
     CDS             2302..2526
                     /locus_tag="K0P45_RS26495"
                     /old_locus_tag="K0P45_26480"
                     /inference="COORDINATES: protein motif:HMM:NF016769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_223363283.1"
                     /translation="MEKQLLSALESLQTSYEQQQQAWQDSYSSLQHMFETTSQALTHSD
                     RVCQHLSSQVESLRAQVESLSRNVSRLMR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2682..3014
                     /locus_tag="K0P45_RS26500"
                     /old_locus_tag="K0P45_26485"
     CDS             2682..3014
                     /locus_tag="K0P45_RS26500"
                     /old_locus_tag="K0P45_26485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_085281492.1"
                     /translation="MSHAIEFIETPMFTRQIKQIATDEELRELQKTLIESPDKGDLIQK
                     TGGLRKVRMATGNQGKSGSARVIYFLATTEVIYLVMAYPKSTKDSLTDAEKAALKMLTQ
                     QLKDEV"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            3016..3300
                     /gene="nadS"
                     /locus_tag="K0P45_RS26505"
                     /old_locus_tag="K0P45_26490"
     CDS             3016..3300
                     /gene="nadS"
                     /locus_tag="K0P45_RS26505"
                     /old_locus_tag="K0P45_26490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_001697687.1"
                     /translation="MSFFDELKASLEEAVEIKNGVREPARVTRYELADVKAIRAQLNVS
                     QSEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFQELAAH"
                     /name="nadS"
     gene            3494..4399
                     /locus_tag="K0P45_RS26510"
                     /old_locus_tag="K0P45_26495"
     CDS             3494..4399
                     /locus_tag="K0P45_RS26510"
                     /old_locus_tag="K0P45_26495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019725130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_085281041.1"
                     /translation="MHNAALELFNDRLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPENGHAHLLYALKTSIRTAPDGKMK
                     PLCYAAAVENALRKKLEADTGYSGLICKNPNHGHWKVAVWQPELYTLDWLADFLDLNAA
                     NEKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLQACYERASAYNLQFAVPLD
                     ENEVSGIAKSIAKWTSSKFSEESFSDFVKKTHTKKIQSKRGVLSGKSRRIGSLEDTRPW
                     DDLGISRRKYFYMKKNGEGK"
                     /name="replication initiation protein"
     gene            4396..>5234
                     /locus_tag="K0P45_RS26515"
                     /old_locus_tag="K0P45_26500"
     CDS             4396..>5234
                     /locus_tag="K0P45_RS26515"
                     /old_locus_tag="K0P45_26500"
                     /inference="COORDINATES: protein motif:HMM:NF033610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4231 domain-containing protein"
                     /protein_id="WP_219903611.1"
                     /translation="MKYPSLYDVTNKRSASYQKRYFFFLRLEYCILILNAVNAFLTYEK
                     KHIVALVLFSMLMLMMVLKIKKTSEQEWYKYRAITESIKTVSWKFSMRAEPFNDEDEVK
                     NINSLSEYLEDIVGGSEFISKTIDPKSVDESTVTDEMKGLRTLSFEKRRDFYVDGRIND
                     QRDWYVSKAQANKDAGKKWNICMFVIYVLAFLCSLYNAYYSVPGSIIPISILTTIASSL
                     VGWIQVKRYSELSASYILTAHEIGVIKEQASYVSSESDFSSFIRDAETAFSREHTQW"
                     /name="DUF4231 domain-containing protein"
     Typing          1060..2618
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.678"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgctagacga gtggccaaca gaaaaccgaa gtaaggggca ccgccccttt tttatcgcgc
       61 atgaaggcgg attgcagcaa taatactttc agtgttccat ctaacaactt ctactgctct
      121 tgttgaaacc atggtagata tccgctgcgc acctcttgga acaacaccta taacaggtat
      181 tccgttagct agcgcagtat ctaactccca ctccatccaa ctactatgag atgcatagat
      241 gcctgctaaa ccaatcaaga tattagaatc tagtatcttt cttttgagaa cggattttat
      301 gtacggtgcg ttggttgaat ttattggttc attcctgctg acttcggaat actcagcatt
      361 aaagtagggt ctagcgtcaa tcaatcttct taatgattcc agttcatcgt gatgcgccca
      421 tgcatgacta ataaaaacct tatgttctct tgccactgat tgctcctttt actcaatccc
      481 ctatgaacgc gcattatacc tctgcgccga tccgttttgc actcgaacct atatcagata
      541 acagcctctc ttagaggggc cgtttttttt gcagccagca cagaatctgc catacttcac
      601 cttactttaa gccagtacac acagcgtccc ctctaacgag gtgccaccgt gactggttca
      661 gggggctcgc cgccccccga aacccctggc atccactgcg aaaaattctc acagtggtgc
      721 gaattttttc tcagcggagc ctatggaaaa gcgaacaaaa gagatcaaaa tccggctcac
      781 cgaaactgag catcagcgac tgcttgatcg ctgtgaccgg actcatcttg cagagtggct
      841 gcgtcagctt ggtctgggag aacacacctc acgcaagcgc cgtgtgcctg atgtggctcc
      901 cgaacttctg cgacaggtca gcgggattgg taacaacctg aaccagatcg cccgtcgcct
      961 gaaccagact aattccctga cgccttctga acgtgcctcg ctgctcgtcg tactgaccag
     1021 ccttgaccgt cagcttggcg acctgctgga gcagaaccgt gatcgttaaa attcactcac
     1081 ggggtgcggg ttcgggcagt gggcccgtgg attacctgct gggtaaagac cggcagcgcg
     1141 aacaggcccg cgtactgcgc ggcaaccctg aacatgtgcg cgagctaatc gacggctgcg
     1201 actttgcccg cgcctacaca tctggcgtgc tgtcatttca ggaacctgac attgcagacg
     1261 cggagaaatc gcgcctgatg gacgaatggg agcacacgct gctgaccggc ctcgattgtg
     1321 accagtacgc ctgtctgtgg gtagagcatc gcgacaaggg acggcttgag ctgaattttg
     1381 tcatcccgaa catcgaattg cagagcggca aacgcctgca accctacttt gaccgcgctg
     1441 accgcccccg tgtcaacgcc tggcagaccc tgaccaacga ccggctgggg ctgcgcgacc
     1501 cgaacgatcc gacttaccgc cgcccgctga cgcaggccag cgatcttccc cgcgacaaac
     1561 agcaggcggc agagaaaatt accgccggcc tgatgaacct gatgcagcag ggcatgatcc
     1621 gcagccggca ggacgtggtg acgcagctgg aaagctacgg cctgaccgtg gcacgggaaa
     1681 cgaaaagcag catcagcatt gccgatccgg acggcggccg aaatatccgg ctgaaaggaa
     1741 tgatatatga gcgagatttt aaatttggcg aagggcttcg aggagaaatc gaagcagcag
     1801 gcgcaggata ccgagctgag cgtgaagcgc gagttcgcga ggctggagac gtctatcagc
     1861 gcggaactgc aatcaagctc gcagagcatc agcaacgcta tccgcgagca gaacggcagg
     1921 ctgacgggca tgatcagaac ctccgtctca gcggcgatgg cgtggatatt cctctgcttt
     1981 gccctgctga tcggtatcct gggcgggata atctggtttc agggcacgat catcacctcg
     2041 cgcctgagcg agatggacag ctacagccaa cagctggaga gcctgaaagc gaaaagcggc
     2101 gcgggcgtga cgatttacag cgacgacaag aaccggaaca cttacctggt ggtgctgccg
     2161 aagcaggcgc acggcgtgga aacctacaca tcgacgaccg acaacaccgt ggtgaaatac
     2221 acggcgaaat aaccccgtca gaacgccctg aatcgcgact gagcggtttt aagaccgagg
     2281 atgagcaaaa ccatgaccga gatggaaaaa cagcttctga gcgccttaga aagcttacag
     2341 acaagttacg agcaacagca gcaggcgtgg caggacagct acagcagctt gcagcacatg
     2401 ttcgagacta cctcacaggc gctgacgcac agcgacaggg tgtgtcagca cttgagcagt
     2461 caggtagaga gcttgcgcgc gcaggtcgag agcttgagca ggaacgtcag ccgcttgatg
     2521 cgctgattgc acagcatgac cgcgcccgtg aggagaagct gcgcgagcag cagccggagc
     2581 cgcagaaaaa accgacccgc tactatggcc cctcgatgtg atcgcttttc cgaattcaga
     2641 ttttggtgta ctatgtacgc cattaaaaac aggagacagc cgtgagtcat gcgattgagt
     2701 ttatcgagac cccgatgttt acccgtcaga taaaacagat cgccacggat gaagagctca
     2761 gggagctgca aaagacgctg attgagtcgc cggacaaagg cgatctcatc cagaaaaccg
     2821 gcgggctgcg aaaagtcaga atggcgacgg gaaaccaggg aaaaagcggc agtgcaaggg
     2881 tgatttactt tctggccacc accgaggtga tttatctggt gatggcctac ccgaaaagca
     2941 ccaaagacag cctgacggac gcggagaaag ccgcgctgaa gatgctgacc caacaactga
     3001 aagacgaggt gtgacatgag tttttttgac gagctgaaag catcgctgga agaagccgtt
     3061 gaaatcaaaa acggcgtcag agagcctgcc cgcgtcaccc gttacgagct ggcagacgtg
     3121 aaggccatca gggcacagct gaacgtttca cagagtgaga tggcgaaagt gctgggaacc
     3181 agtctcgaca ccatcaagag ctgggaaacc ggacgccgta acccgactgg actggcggcg
     3241 aaggtgctgg caaccatcca ggcgaatcca aaattcttcc aggagctggc ggcgcactaa
     3301 gccgttgtga cagaaggatt cgacaggcga ggccgctcac gtgtaattta acggcaacag
     3361 aaaaaacaaa gccccggaaa tcatgagcta tcttggcgga tgagcatgac taccagggcc
     3421 aggtacgaaa ccttgaaagg atattagcac atgaaccgtg ccagacaaca gcccgccata
     3481 agcgcagggc acattgcata acgccgcact cgaacttttt aacgaccgct taccgcacaa
     3541 gccgtacttt tcggacgatc tgcactttgg tgtacgcatt gccggtaagg aacgcgccat
     3601 tctggcgaaa tacattcagt tcaatcagcc tcacgctatg ttctggctgg gattcgacgt
     3661 cgatcgcgcc ggtgccgcca tcgactggag tgaccgcaac gcgcccgcgc ccacgctgac
     3721 catcactaac cctgaaaatg gacacgcgca cctgctttat gcgctgaaaa cctcgatacg
     3781 taccgcgccg gacggaaaaa tgaagccgct gtgctacgcc gccgccgtgg agaacgcgct
     3841 acgtaaaaaa ttagaggctg acacggggta ttcgggacta atctgcaaaa atccgaacca
     3901 cggccactgg aaagttgccg tatggcagcc ggaactctac acgctggact ggttggctga
     3961 ttttcttgat ttgaacgccg cgaacgagaa agaaatcgtt gccgactacg gattaggccg
     4021 taactgcacc ctattcgata aaacccgtaa gtgggcctat cgcgctatcc gtcagggctg
     4081 gcctgagtat gagcagtggc tgcaagcctg ctacgaacgc gccagcgcct ataatctgca
     4141 attcgcagta ccgctggatg aaaatgaggt tagtggaata gctaaaagta ttgctaagtg
     4201 gacttcatca aaatttagtg aggaatcatt cagcgatttt gttaaaaaga cacatacaaa
     4261 aaaaattcaa tcaaagagag gtgttttatc aggaaaatca agacgaatag gtagtctaga
     4321 ggatactcgt ccgtgggatg atttgggcat aagtagaagg aagtattttt atatgaaaaa
     4381 gaatggtgaa ggaaaatgaa atacccaagt ctttatgatg taacaaataa aagatctgct
     4441 tcatatcaga aaaggtattt cttcttttta aggcttgaat attgcatttt gatacttaat
     4501 gcggtcaatg ctttcttaac ttatgaaaaa aaacacatag tcgcattagt actgttctcc
     4561 atgcttatgt taatgatggt tttaaaaatt aaaaaaacat cagaacaaga gtggtacaaa
     4621 tacagggcga ttactgaatc gataaaaact gtctcatgga agttttccat gagagctgaa
     4681 ccatttaatg atgaagatga ggttaaaaat ataaactcat tatcagagta tctggaggat
     4741 attgttggtg gtagtgagtt catatctaaa actattgatc ctaagtcagt ggatgaaagc
     4801 acggtgactg atgagatgaa agggcttcga accctatcat ttgaaaagcg cagagacttt
     4861 tatgtagatg gaaggattaa tgatcaaaga gattggtatg taagtaaggc tcaagcaaac
     4921 aaagatgcag ggaaaaaatg gaacatttgt atgttcgtta tctatgtatt agcgttctta
     4981 tgttcacttt ataatgcata ttattcagtt ccaggtagca taattccaat aagcattttg
     5041 acaacaatag catcgtcatt agtaggttgg attcaagtta aaaggtatag cgaactgtcc
     5101 gcttcgtata ttcttaccgc gcatgaaata ggggtaataa aagaacaggc gtcatatgtt
     5161 tcaagtgaga gtgatttctc ctcatttatt agagatgcgg aaactgcatt ttcgagagag
     5221 catacccaat ggat
//
