LOCUS       NZ_CP080348             2736 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain K191659 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP080348
VERSION     NZ_CP080348.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20422816
            Assembly: GCF_019443565.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     ST656 K. pneumoniae in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) foundation medicine, Southwest medical
            university, Longmatan District, Luzhou, Sichuan 646607, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.04; unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:22:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,715
            CDSs (total)                      :: 5,592
            Genes (coding)                    :: 5,446
            CDSs (with protein)               :: 5,446
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 70 of 146
            Pseudo Genes (incomplete)         :: 78 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 22 of 146
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080348.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="K191659"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:wuxi"
                     /collection_date="2019-10-24"
     gene            join(2396..2736,1..154)
                     /locus_tag="K0P51_RS25635"
                     /old_locus_tag="K0P51_25635"
     CDS             join(2396..2736,1..154)
                     /locus_tag="K0P51_RS25635"
                     /old_locus_tag="K0P51_25635"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_065812099.1"
                     /translation="MGLAQVKALDNIQEFEFDDEVAEQVENLQEKGNVKVTAIIQQEKK
                     SSLKSEFVMAFTSNLRALAELNISQSELKVITYILEIMEYGNLISLNQSQIARDLDMKK
                     SNMSVIFKKLTEKGVLIKEKGHLFMNSNLFAKGLNHKLNTERRENLKTAQFENDKFTRS
                     F"
                     /name="replication/maintenance protein RepL"
     gene            538..1206
                     /locus_tag="K0P51_RS25640"
                     /old_locus_tag="K0P51_25640"
     CDS             538..1206
                     /locus_tag="K0P51_RS25640"
                     /old_locus_tag="K0P51_25640"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /GO_function="GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="WP_065812098.1"
                     /translation="MENINYEEYMKSNPGVPDRIKQIVYKYQKLASSEFFVLDTETTGL
                     RGEVVSFALIDEKNNILINEFCKPTYEKICSEAESIHHITNEMIKDARNIISIYEDFSK
                     IINSEENKNKPIFIYNEEFDISTIYRSLNVAKYKYKDNDSKGNNDFDNFELRSHCVMKD
                     FAKFYGEYNEYRGGYKWQKLEFAANYFGVETANLELHNSAVDCYLTLEVIKNMRDFIYG
                     "
                     /name="3'-5' exonuclease"
     gene            1199..1933
                     /locus_tag="K0P51_RS25645"
                     /old_locus_tag="K0P51_25645"
     CDS             1199..1933
                     /locus_tag="K0P51_RS25645"
                     /old_locus_tag="K0P51_25645"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA];
                     GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="WP_072769506.1"
                     /translation="MGNSKRNIKKLNEDFRENILEYAISHNLKCANALVALYATGCRPD
                     EIETGIKVNFDSKNNKLSFKIIGSKLNYQQKRGIRIREVTVKITDKNLQYYKSIIDIFE
                     KNPQAYDLKIKTESAKAFSGYITKISKKLWPRKKYHASAYSFRHAKATELKNSEGFDAE
                     KIAKIMGHASVRSQQSYGRKSKRSAGGFDDITDVETSSKPRGGDRLLRFKIKNKNEAAK
                     KIKAASTPTDTVSPPPVRSLKR"
                     /name="site-specific integrase"
ORIGIN
        1 cactgagaag ggagttttaa taaaagaaaa aggacatttg tttatgaatt ctaatctatt
       61 tgctaagggt ttaaatcata aattaaatac agaacgaaga gagaatttaa aaactgcaca
      121 atttgaaaac gataaattta caagatcatt ttaaaaccgt cctcgccgga cgggccaaat
      181 cccttaaaaa atagaaaaaa attctatttt ctaagggatt ttttttatcc attgattttc
      241 cacatttcaa atattgacat taatttcaac ccggttatat ctatattatc ttttgttgtt
      301 tctaccccga tcctggggtg gaacaacaag gcattatgaa gggtaagttt tttattaccc
      361 gaaattatgc cacccccaac cgggggtcat tgtttgaatt ttgaagcaac gcgaaaaatt
      421 taaataatgg ggggatggtt tgggttttac ggtatttcaa atttgagcga tagcgaattt
      481 ttgaaatttc cggattttga tgttaacaat ggtaaaaaca ataattaagg tggatatatg
      541 gaaaatataa attatgaaga atatatgaaa agcaatccgg gagttcctga cagaataaag
      601 caaattgttt ataaatatca aaaacttgca agcagtgagt tttttgtact agacacagaa
      661 acaacaggtt tacgcggcga agttgttagt tttgctttaa ttgacgaaaa aaacaatata
      721 ttgattaacg aattttgcaa accgacgtac gaaaaaattt gttcagaagc tgagtctatt
      781 catcatatta caaacgaaat gataaaggat gctagaaata taatttctat atatgaagat
      841 ttttcgaaaa taataaatag cgaagaaaat aaaaacaaac caatatttat atataatgaa
      901 gagtttgata tatcaacaat atatagatct ttaaatgttg cgaaatacaa atataaagat
      961 aacgatagta aaggaaataa tgatttcgat aatttcgaat taagatctca ttgtgttatg
     1021 aaagattttg caaaatttta tggagaatat aacgaataca gaggaggtta taaatggcaa
     1081 aaacttgaat tcgcagctaa ttattttggt gtagaaactg ctaatttaga attacataat
     1141 tctgcagttg attgttattt aacattggaa gtaattaaaa atatgagaga ttttatatat
     1201 gggtaattca aaacgaaata taaaaaaact aaatgaagat tttagggaaa atattttaga
     1261 atatgcgatt tcgcataatc taaaatgcgc taacgcactt gtggcattat atgccacagg
     1321 ttgcagaccg gacgagatcg aaactggcat taaagttaat tttgatagta aaaacaataa
     1381 gttaagtttt aaaatcatcg gctcaaaatt aaattatcaa caaaaaagag gtattagaat
     1441 tagagaggtt acggtaaaaa tcacagataa aaatcttcaa tattacaaat ctataataga
     1501 tatttttgag aaaaaccctc aggcatatga tttaaaaatt aaaactgaaa gtgcaaaagc
     1561 gttttccgga tacattacaa aaataagcaa aaaactatgg cccaggaaaa aatatcacgc
     1621 ctcggcgtat tcttttagac atgcaaaagc aacagaattg aaaaattcag agggttttga
     1681 tgctgaaaaa atcgctaaaa ttatgggtca tgcttctgtc agatcacaac aaagctacgg
     1741 tagaaagagc aaaagaagcg caggtggatt tgacgacatt acagatgttg aaacaagctc
     1801 taagccccgt gggggcgata gattgctgag atttaagatt aagaacaaaa atgaagcagc
     1861 aaagaaaatt aaagcagctt ctacccctac ggatacagta agtccacctc cagttcgttc
     1921 tctaaaacgc tgagaagcta cacagcttgc tgtgtggctt tgaagggttg acctgtccgg
     1981 taggacggtt ttatagcaaa atcctccata ttgcgaagca gggccccgga acgggtaact
     2041 gggatggttt tccagatggg ttttggggtt ggatctatcg aatggcacag cctggattgt
     2101 tttcctttct tatgttctta ttaattctta cttcttaaca tactatcaag acattgttat
     2161 atatagtttt tttcaaaaaa aagttatgta aactcataac tccagttatg taatcttata
     2221 actcgaagtt atgtaaactc ataactccag ttatgagatc tcataactac aggattggac
     2281 tatagtccaa agacatataa caaagtttaa ttttttttta ctttgttatt gactagtaca
     2341 caaaatatat tataaaagag ctgagtttat acaatttaaa aggagtaaaa aaattatggg
     2401 gttagcacaa gttaaagcac ttgataatat tcaagaattt gaatttgatg atgaagtagc
     2461 ggagcaagta gaaaatttac aagaaaaagg aaatgtaaaa gtcactgcta ttattcaaca
     2521 agaaaagaaa agttcgctta aaagcgaatt tgttatggct tttacaagta atttaagagc
     2581 tttagcagaa ttaaatataa gtcaaagcga gttaaaagta attacataca ttctcgaaat
     2641 tatggaatac ggcaatttaa ttagtctaaa tcaatcgcaa atcgcgagag atttagatat
     2701 gaaaaaatct aatatgtctg ttatttttaa aaaact
//
