LOCUS       NZ_CP080347             3585 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain K191659 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP080347
VERSION     NZ_CP080347.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20422816
            Assembly: GCF_019443565.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3585)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     ST656 K. pneumoniae in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3585)
  AUTHORS   Zhang,B. and Zhou,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) foundation medicine, Southwest medical
            university, Longmatan District, Luzhou, Sichuan 646607, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.04; unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:22:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,715
            CDSs (total)                      :: 5,592
            Genes (coding)                    :: 5,446
            CDSs (with protein)               :: 5,446
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 70 of 146
            Pseudo Genes (incomplete)         :: 78 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 22 of 146
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP080347.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3585
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="K191659"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed1"
                     /geo_loc_name="China:wuxi"
                     /collection_date="2019-10-24"
     gene            647..778
                     /locus_tag="K0P51_RS28775"
     CDS             647..778
                     /locus_tag="K0P51_RS28775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023224512.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDKAPLAAATGNRISRAS"
                     /name="hypothetical protein"
     gene            1547..2482
                     /locus_tag="K0P51_RS25620"
                     /old_locus_tag="K0P51_25620"
     CDS             1547..2482
                     /locus_tag="K0P51_RS25620"
                     /old_locus_tag="K0P51_25620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_171878940.1"
                     /translation="MTAQDVINVLTILKANDSTSFSKIQRALKMSISQLEGIIDGLTAM
                     GIVYKSSFTSYSLTELTSKPVVSDGVRKAFEDIITNRGTYLSEELLQKVSTPFIPLMTH
                     EYKNAPVKVMIVGQETLGMEDAFSTIVSVDDYINESIESFNKFNFGEDLRNSHFWYAFD
                     EVVKYFNLPSRRHAYWTNLHKFQLIENDGDSVSISKLPSKDIMTMIHMQRELFLAEIKD
                     TKPDIIIYFTGGQTWVLDHYLNNGKKLAVKAIDERSHLGIIQTEFLHCPIAICTDHPAR
                     RGYTQAIVDHRANLLKYAADKFYASESARV"
                     /name="hypothetical protein"
     gene            <2512..2615
                     /locus_tag="K0P51_RS25625"
                     /old_locus_tag="K0P51_25625"
                     /pseudo=""
     CDS             <2512..2615
                     /locus_tag="K0P51_RS25625"
                     /old_locus_tag="K0P51_25625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558297.1"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /name="IS3 family transposase"
     gene            complement(2675..3133)
                     /locus_tag="K0P51_RS25630"
                     /old_locus_tag="K0P51_25630"
     CDS             complement(2675..3133)
                     /locus_tag="K0P51_RS25630"
                     /old_locus_tag="K0P51_25630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_171878937.1"
                     /translation="MTKKSVPHCIVHACMNGLFFLTTELHRSFSSYITFTTLLHHLYIT
                     FTSFLQLIRHFHPLCHLYITPFLNVLTAGFPAAPATLHGHAINCVPVHRFRMGRTPETG
                     LPLAEWCEFPRYALARILMHAVKTEPARFWRVFGWFVACFTGFPSETP"
                     /name="hypothetical protein"
     Typing          267..756
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.13"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 cgtagcgcta gcggagtgta tactggctaa acttcagaga tgccaaggaa gggacaggat
       61 atgttttgta gcaccgccac cacggtggcg atactccaaa acgcctggtc agggcacagc
      121 cccgacaccc cagagccgac tgtaggtcac tgggcgaacg cggcggaatg atgtcggatg
      181 acgtcatttt gcggcgttcg ccctatcctg catcgtatta aaaaatgcag ctatggcgcg
      241 tacggtgcca aagataagcc cggagatatt ccgcttcctc gctcactgac tcgctccgct
      301 cggtcgttcg gctgcggcga gcggtaccgg cttactggcg gggcggaaat ttcctggcat
      361 cttccaggaa gaagcttaac agggaagcaa gaaggccacg gcgaagccgt ttttccatag
      421 gctccgcccc cctgacaagc atcacgaaat ctgacgctca aatcagtggt ggcgaaaccc
      481 gacaggactt aaagatacca ggcgtttccc cctggtggct ccctcgtgcg ctctcctgtt
      541 cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcgtttatc tcattccacg
      601 cctgacactc agttccgggt aggcagttcg ctccaagctg gactgtatgc acgaaccccc
      661 cgttcagtcc gactgctgcg ccttatccgg taactatcgt cttgagtcca acccggaaag
      721 acacgacaaa gcgccactgg cagcagccac tggtaacagg attagcagag cgagttaatg
      781 taggtggtgc tatagagttc ttgaagtggt ggcctaacta cggctacact ggaaggacag
      841 tatttggtat ctgcgctctg ctgaagccag ttaccaggtt aagcagttcc ccaactgact
      901 taaccttcga aaaaccacct ccccaggtgg ttttttcgtt tcttggagaa gagactacga
      961 cgacaaatga cggatctcaa gaagatcctt ttaacgtaca aaaatttccg ttctccaaac
     1021 tacccaccag gataacttac caatcataaa aatcatgata ggccactacg gtcgatgtct
     1081 tgaagcaatg ctcggttata gtcgtttatc tctgaggatt tttagcttgt aaccaatcag
     1141 gcaaagtcgt tattgatgcc ggttcattag agaaatatag gggtcgatag agaaaacggg
     1201 aaataaagca cggtaagaca gcggcaggcc atgccatgct tggtctttct ggaatggtgt
     1261 ccagttgaag tacgcctcaa ccgggcgtca ggcaccccac ctatgttgcg tcagattagg
     1321 atcgtttttc gccttttctg acgatctgcg ctcggcctct caggcttcaa cctgacagat
     1381 caaccgctag cgtgctttat tttccgaatt ctgagacgac cccatatagg ggccaatcca
     1441 gggattaccg gggcatgtga tttttgacta attttttgta ctgcgaccgt cagaatgagt
     1501 taaacgcgta tctacattga agcagttcaa tatgaggaaa acaggaatga cagcacaaga
     1561 tgtaatcaac gttctcacta ttcttaaggc caacgactca accagtttta gcaagattca
     1621 acgcgcgtta aagatgagta tttcgcagtt ggagggcatc attgatgggt taactgcaat
     1681 gggaatagtg tataaatcat cattcacttc atacagcctt actgagttaa cctctaaacc
     1741 tgttgttagt gacggtgtaa gaaaggcatt cgaagatatc attaccaatc gcggtactta
     1801 cctgtcagaa gaactactac aaaaggtaag tacaccattc atcccactga tgacgcacga
     1861 atacaaaaat gccccagtta aagtgatgat cgtggggcaa gaaactctgg gaatggaaga
     1921 tgctttcagt accatcgttt cggtcgatga ctacattaat gagagcattg aatccttcaa
     1981 taaattcaat tttggtgaag atttaaggaa tagccacttt tggtatgcat ttgatgaagt
     2041 agtaaagtat tttaacctac catccagaag gcatgcttat tggactaatc ttcataagtt
     2101 tcaattaatt gaaaatgatg gagatagtgt cagcatttcc aaactacctt caaaagatat
     2161 catgacaatg attcatatgc agcgtgaatt attcttggct gaaattaaag ataccaagcc
     2221 agatatcatc atctacttca cgggtgggca aacctgggtg ttagatcatt atctaaacaa
     2281 tggtaaaaaa ttagcagtta aggcaataga tgaacgctcg catctgggga ttatccagac
     2341 agaatttttg cattgcccaa tcgctatatg taccgaccac cctgctagaa ggggatatac
     2401 tcaagccatc gtagatcata gagctaatct gcttaaatat gctgctgaca aattttatgc
     2461 aagtgaatcg gcacgggttt aacagaccac ccagagtcat ttaagatcgc ttacatcgaa
     2521 atgttttata acagtaacgt cggcatggtt ctagcgaaca catgtcaccg acagaatatg
     2581 aaaaccagta ttatcaacgg ctcggaagtg tctagattat ccgtggcgat tcaatttacc
     2641 ataacatccg ttgcccgcac cgcctgagaa gctctcaggg cgtttctgac gggaaaccgg
     2701 taaaacaggc aacaaaccac ccgaaaaccc gccagaaacg cgcaggctct gtttttacgg
     2761 catgcatgag tatgcgcgca agtgcatagc gcggaaattc acaccattca gccaggggaa
     2821 gtcctgtttc cggcgttctt cccatccgaa aacggtgaac ggggacgcaa tttattgcgt
     2881 ggccgtgaag cgttgccggc gcagccggaa aacccgctgt cagcacgttc aggaaggggg
     2941 tgatgtacaa atggcacaga ggatgaaagt gacgtatgag ctgaaggaat gatgtaaaag
     3001 tgatgtataa atgatgtaaa agtgttgtaa aagtgatgta tgaactgaag gagcgatgta
     3061 attctgtagt caggaagaat aacccgttca tgcaggcatg aacgatacag tgaggaacgc
     3121 ttttttttgt cacgatctcc ccttaacctg cgtaaatcac cctccatggt tgattatttt
     3181 tcaacctcaa aatggtcata cacctaacgc agccgcgatt ttcatcgcaa ctgcatgaat
     3241 taaaagaaaa aaaatgaatg tttcgttttc acgagtaata cccaggtatt aaaaacccac
     3301 tgtaattaca tgaaaataaa gaaataaaag gtaataccgg cgtattacca cgtacgcggg
     3361 caagcgaaaa agctataacg cttcccggcc gacaggcggc ccagaatcca caggggcatg
     3421 caggatctct tcagtaacct tcgccattaa atcaaaaagg tcatattcgc cgggaagctg
     3481 cgtatcagtc gaaccccgtt gctcatcata ttcagatggc atggggtgat atccagtagc
     3541 agagaggttg ttagcgggtt tcggggcgca gccctgaacc agtca
//
