LOCUS       NZ_CP079938             3961 bp    DNA     circular CON 04-APR-2024
DEFINITION  Enterobacter hormaechei strain G17 plasmid pG17-3, complete
            sequence.
ACCESSION   NZ_CP079938
VERSION     NZ_CP079938.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20299883
            Assembly: GCF_019356035.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3961)
  AUTHORS   Wang,X., Yu,R. and Du,X.
  TITLE     The emergence of tigecycline resistance gene tet(A)-variant in
            Enterobacter hormaechei isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3961)
  AUTHORS   Wang,X., Yu,R. and Du,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2021) College of Animal Science and Veterinary
            Medicine, Henan Agricultural University, No.15, Longzihu University
            Campus, Zhengdong New District, zhengzhou 450046, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-JUN-2021
            Assembly Method :: A5-miseeq v. v20150522; CANU v. V1.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 432.0x
            Sequencing Technology             :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019356035.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 06:18:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,752
            CDSs (total)                      :: 4,639
            Genes (coding)                    :: 4,547
            CDSs (with protein)               :: 4,547
            Genes (RNA)                       :: 113
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 27 of 92
            Pseudo Genes (incomplete)         :: 77 of 92
            Pseudo Genes (internal stop)      :: 14 of 92
            Pseudo Genes (multiple problems)  :: 21 of 92
            Pseudo Genes (short protein)      :: 1 of 92
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079938.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3961
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="G17"
                     /host="duck"
                     /db_xref="taxon:158836"
                     /plasmid="pG17-3"
                     /geo_loc_name="China:henan"
                     /collection_date="2021-01-20"
     gene            complement(join(3891..3961,1..85))
                     /locus_tag="KY275_RS01790"
                     /old_locus_tag="KY275_01795"
     CDS             complement(join(3891..3961,1..85))
                     /locus_tag="KY275_RS01790"
                     /old_locus_tag="KY275_01795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_219240875.1"
                     /translation="MKEKKHKCSHSNLEKEYIAGMATGDYKCVDCGAVGWGKNWPKNEQ
                     DRKDDE"
                     /name="hypothetical protein"
     gene            complement(66..992)
                     /locus_tag="KY275_RS01795"
                     /old_locus_tag="KY275_01800"
     CDS             complement(66..992)
                     /locus_tag="KY275_RS01795"
                     /old_locus_tag="KY275_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_219240877.1"
                     /translation="MRNAALELFNDRLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRLGAAIDWSDRNAPAPTLTITNPENGHAHLLYALKTSIRTAPDGKMK
                     PLKYAAAVENALRNKLDADAGYSGLICKNPNHGHWKIAVWQPELYTLDWLADSLDLSAA
                     NDKEIIPDYGLGRNCTLFDKTRKWAYRAIRQGWPDYEQWLQACYERASAYNLQFSAPLD
                     DKEVKGIVKSIAKWTNKQFTPESFHEYVIRTHSKDIQSIRGAKGGAISKGGGRKIDPLS
                     VESLKPWNDLGMSRRTYYRMLYERKKT"
                     /name="replication initiation protein"
     gene            complement(1377..1622)
                     /locus_tag="KY275_RS01800"
                     /old_locus_tag="KY275_01805"
     CDS             complement(1377..1622)
                     /locus_tag="KY275_RS01800"
                     /old_locus_tag="KY275_01805"
                     /inference="COORDINATES: protein motif:HMM:NF016769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_338404807.1"
                     /translation="MTKIMTEMEKQLLSALESLQTSYEQQQQAWQDSYSSLQHMFETTS
                     QALTHSDRVCQHLSSQVDSLRAQVESLSRNVSRLMR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1671..2156)
                     /locus_tag="KY275_RS23725"
     CDS             complement(1671..2156)
                     /locus_tag="KY275_RS23725"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_246616009.1"
                     /translation="MSEILNLAKGFEEKSKQQAQDTEQSVKREFARLETSISEDLKSSS
                     QSISNAIREQNGRLTGMIRTSVSRAMAWVFLCFALLIGILSGIIWFQGTIITSRLSEMD
                     SYSQQLASLKAKSGAGVTIYSDDTRRNTYLVVLPKQAHGVETYTSTTDNTVVKYTAK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2203..2625)
                     /locus_tag="KY275_RS23730"
                     /pseudo=""
     CDS             complement(<2203..2625)
                     /locus_tag="KY275_RS23730"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2834..3160)
                     /gene="mobC"
                     /locus_tag="KY275_RS01810"
                     /old_locus_tag="KY275_01815"
     CDS             complement(2834..3160)
                     /gene="mobC"
                     /locus_tag="KY275_RS01810"
                     /old_locus_tag="KY275_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_116362722.1"
                     /translation="MEKRTREIKIRLTDSEHQRLIDRCDRTHLAEWLRQLGLGEHTARK
                     RRLPDVAPELLRQVSGIGNNLNQIARRLNQLDGLTPTERVSLLAVLNSLDRNLGELLEQ
                     HRDH"
                     /name="mobC"
     gene            3451..3846
                     /locus_tag="KY275_RS01815"
                     /old_locus_tag="KY275_01820"
     CDS             3451..3846
                     /locus_tag="KY275_RS01815"
                     /old_locus_tag="KY275_01820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_219240874.1"
                     /translation="MKKAAICLVVLSVSACGVSQQDARNLNYGPSPKNYDVEVVSLLKS
                     ELKDPDSVQIQSITKPRRGYASYGFGTKEYGWHVDVTYNAKNSYGGYTGYKTRQYIYNG
                     SYSIPHTYEITFIDNKEYYCNNNCSEK"
                     /name="hypothetical protein"
     Typing          2835..3027
                     /name="Col(Ye4449)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.691"
                     /coverage="100.0"
                     /evalue="1.79e-63"
     Typing          complement(1280..2844)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.678"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cacatttgta atctcctgta gccattcctg caatatattc tttctctaaa ttactatggc
       61 tacatttatg ttttttttct ttcatataac atcctataat aagttcttcg actcatacca
      121 agatcattcc atggctttaa agattccacg gataaaggat ctatttttct accaccacct
      181 ttgctaatcg cccccccttt agcgcctctt atagattgaa tatcttttga atgagttctt
      241 attacatatt cgtgaaatga ttcaggggta aactgtttat tagtccactt agcaatactt
      301 ttaacaattc ctttcacctc tttatcgtca agaggcgctg aaaattgaag attgtaggcg
      361 ctggctcgct cataacaggc ttgcaaccat tgctcataat caggccagcc ctgacgaatg
      421 gcacggtaag cccacttacg ggttttatcg aacagggtgc agttacggcc taaaccgtaa
      481 tcgggaataa tctctttgtc gttcgccgca ctcaagtcga gtgaatcggc cagccagtcc
      541 agtgtgtaga gttccggctg ccagacggca attttccagt gaccatggtt cggattcttg
      601 caaattaacc ccgaataccc cgcgtcagcg tccagtttat tacgtagcgc attctccacg
      661 gcggcggcgt acttcagcgg cttcattttt ccgtctggtg cggtgcgaat ggaggttttc
      721 agggcataga gcaggtgcgc gtgaccgttt tcggggttgg tgatggtcag cgtgggcgcg
      781 ggcgcgttgc gatcgctcca gtctatcgct gcaccgaggc ggtcaacgtc aaatcccagc
      841 cagaacatgg cgtgaggctg attaaactgg atgtatttcg ccaggatagc gcgctctttc
      901 cctgcgatgc gtacaccgaa gtgaagatcg tccgagaagt acggcttgtg cggtaagcgg
      961 tcgttaaaaa gttcgagtgc ggcgttacgc aatgtgccct gcgcttatgg cgggctgttg
     1021 tctggcacgt ttcatgtgct aatatccttt caaggtttcg tacctagccc tggttatcat
     1081 gtccgctcgc caaagttgag catgatttcc ggggctttgt tttttctgtt gccattaaat
     1141 tacacgcgaa cggcctcgcc tgtcgaatcc ttctgtcaca acggcttagt gcaacaccag
     1201 ttctgttggt ttacagcgtc caattcccca gcttttgata gtatcgaggc tggtaaacac
     1261 aatcaggaaa agtgatcaca tcgagggacc atagtatcgg gtcgaccttt tctgtggctc
     1321 cggctctggc tgctgctcac gcagcttatc ggcgtaggcg cggtcatgct gcctgatcag
     1381 cgcatcaagc ggctgacgtt cctgctcaag ctctcgacct gcgcgcgcaa gctgtccacc
     1441 tgactgctca agtgctgaca caccctgtcg ctgtgcgtca gcgcctgcga ggtagtctcg
     1501 aacatgtgct gcaagctgct gtagctgtcc tgccacgcct gctgctgttg ctcgtagctt
     1561 gtctgtaagc tctctaaggc gctcagaagc tgtttttcca tctcggtcat gattttggtc
     1621 atcctcggtg ttaaaaacgc gctgtggcgc ttcagggcgt tctgacgggg ttatttcgcc
     1681 gtgtatttca ccacggtgtt gtcggtcgtc gacgtgtagg tttccacgcc gtgcgcctgc
     1741 ttcggcagca ccaccagata ggtgttccgg cgcgtgtcgt cgctgtaaat cgtcacgccc
     1801 gcgccgcttt tcgctttcag gctcgccagc tgctggctgt agctgtccat ttcgctcagg
     1861 cgcgaggtga tgatcgtgcc ctgaaaccag attatcccgc tcaggatgcc gatcagcagg
     1921 gcgaagcaga ggaataccca cgccatcgcc cttgagacgg aggttctgat catgcccgtc
     1981 agtctgccgt tctgctcgcg gatagcgttg ctgatgctct gcgagcttga tttcaagtcc
     2041 tcgctgatag acgtttccag cctcgcgaac tcgcgcttca cgctctgctc ggtatcctgc
     2101 gcctgctgct tcgatttctc ctcgaagccc ttcgccaaat ttaaaatctc gctcataaat
     2161 cattcctttc agccggatat ttcggccgcc gtccggatcg gcaatgctga tgctgctttt
     2221 cgtttccctc gccacggtca gaccgtagct ttccagctgc gtcaccacgt cctgccggct
     2281 gcggatcacc ccctgctgca taaggttcat caggccggcg gtaattttct ctgccgcctg
     2341 ctgtttgtcc cggggcaaat cgctggcctg cgtcagcggg cggcggtaag tcgggtcgtt
     2401 cgggtcgcgc agccccagcc ggtcgttggt cagggtctgc caggcgttga cgcgggggcg
     2461 gtcggcgcgg tcaaagtagg gttgcaggcg ttttccgctc tgcaattcga tgttcgggat
     2521 gacaaaattc agctcaagcc gtcctttgtc gcggtgctcc acccacaggc aggcgtactg
     2581 gtcgcggtcg aggccaggca acagcgtgtg ctcccattcg tccatcaggc gcgatttctc
     2641 cgcgtctgca atgtccggct ccaggaatga cagcacgcct gaggtgtagg cgcgggcaaa
     2701 gtcgcagccg tcgatcagct cgcgcacatg ttcagggttg ccgcgcagta cgctggcctc
     2761 ttcgcgctgc cggtctttac ccagcaggta atccaccggc ccgctgcccg aaccggcacc
     2821 gcgtgagtga attttaatga tcacgatgct gctccagcag ttcacccaga ttgcggtcaa
     2881 ggctgttgag caccgccagc agggaaactc gctccgtggg ggtaagcccg tcaagctggt
     2941 taaggcgtcg ggcgatctgg ttgaggttgt tgcctatccc gctgacctgt cgcagcagtt
     3001 cgggcgcaac gtcaggaaga cggcgctttc gggcggtgtg ttctcccaga ccgagctgac
     3061 gcagccattc agccagatgg gttcggtcac accggtctat cagacgctga tgctctgagt
     3121 cagtcaggcg gattttgatc tctctcgtgc gcttttccat tctcactccg ctgagaaata
     3181 ttcgcaccca aagtgcgaaa gtttcgcagt ggatgcccgg ggtttcgggg ggcggcgagc
     3241 cccctgaacc agtcacagac ggcacctcgc agaggggacg ctgtgtgtac tggcttaaag
     3301 tatagccaag tatgtaagat tctgtgctcg ctgcaaaaaa aacagccctc tgctagagag
     3361 ggctgttatc tgatataggc ttgttttagt gccaaggtga gttatcgtta tgttcggaaa
     3421 ttataagcca gtgataaagg acatctttct atgaaaaaag cagctatatg cttagttgtg
     3481 ttatcagttt ctgcctgtgg agtatctcaa caagatgcta gaaatctaaa ttatggtccg
     3541 tcaccaaaaa attatgacgt cgaagtggtt tccttattaa aaagcgaact taaagatcct
     3601 gattctgtgc aaatacaatc aataacaaaa ccacggcgtg gctatgcaag ctatggattt
     3661 ggaactaaag aatatggctg gcatgtagat gttacgtata atgcaaaaaa ttcatatgga
     3721 ggctatacag gatataaaac aagacaatat atttacaatg gtagttattc catacctcac
     3781 acttatgaaa ttacattcat agataataaa gaatattact gtaataataa ttgctccgaa
     3841 aaataaaaaa aagcaaggct gccttaacat tatcgcagcc ttgctttacg ctactcgtcg
     3901 tctttgcgat cctgctcatt tttaggccag tttttacccc agccgacagc accacaatca
     3961 a
//
