LOCUS       NZ_CP079883             2683 bp    DNA     circular CON 02-OCT-2023
DEFINITION  Proteus terrae strain 20Q172tw plasmid unnamed, complete sequence.
ACCESSION   NZ_CP079883
VERSION     NZ_CP079883.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20206207
            Assembly: GCF_025263625.1
KEYWORDS    RefSeq.
SOURCE      Proteus terrae
  ORGANISM  Proteus terrae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Yang,J. and Li,J.
  TITLE     Emergence of the Resistance-Nodulation-Division efflux pump
            tmexCD3-toprJ3 gene in Pseudomonas putida, Proteus terrae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Yang,J. and Li,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) College of Veterinary Medicine, Hunan
            Agricultural University, Changsha, Hunan, China, No.1 Nongda Road,
            Furong District, Changsha, Hunan 410128, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Complete Genomics
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/02/2023 03:48:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,914
            CDSs (total)                      :: 3,801
            Genes (coding)                    :: 3,753
            CDSs (with protein)               :: 3,753
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 18 of 48
            Pseudo Genes (incomplete)         :: 28 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079883.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus terrae"
                     /mol_type="genomic DNA"
                     /strain="20Q172tw"
                     /isolation_source="pig feces"
                     /db_xref="taxon:1574161"
                     /plasmid="unnamed"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020"
     gene            join(2173..2683,1..134)
                     /locus_tag="KZA80_RS19550"
                     /old_locus_tag="KZA80_19505"
     CDS             join(2173..2683,1..134)
                     /locus_tag="KZA80_RS19550"
                     /old_locus_tag="KZA80_19505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            772..1212
                     /locus_tag="KZA80_RS19555"
                     /old_locus_tag="KZA80_19510"
     CDS             772..1212
                     /locus_tag="KZA80_RS19555"
                     /old_locus_tag="KZA80_19510"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             2174..2682
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="79.44"
     ARG             4..134
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="20.09"
     Typing          1924..2079
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ttactggttg tgatttaacg ggtggggcgc ttggcgagct tgatgcaagg cgaattaatt
       61 tagatggagt gaagttggat ggagagcagg cgcttcagct tgttgagagt ttaggtgtta
      121 ttgttcaccg ataaaatcta ggtaaaaaac gcctaatgcc ccaatgtggt actaatcaaa
      181 acggagcgaa gcgacatctt catcttgtct ttgcttttct ccatgatcag ttattgggtc
      241 atggtctctt agctcgttaa tctggctaag tttggttagg ttgggcttct ttcgacactt
      301 cgcaatccaa gaaatcccta gtccgttgat tggtgctctt atcaggtacg cactgtaatc
      361 tttcgatacc gcagcgtgat tcggaggtag agccggaatt tcgttttccg gtacgtttta
      421 ctaccacaat ttgcctgttt atcctttcgg agaccgggct aagtccgagt caatcaagtg
      481 gtgcatttgg gttaatgtcg ttggctggta tttaatgaga acgtgacaag cgcctctcac
      541 gttgctaaga ttggattgcg acgtctaatc tgagcaacga atgcacaaga tttagagtac
      601 cagagccctg tgatgctgtc acggggcttt gttacatctg gagcttggta aacctcataa
      661 attcaattcg caacgctcgc cgcaaggcgt gaacttgttt cacgtcgagg aagcggaatt
      721 tctcgaaagc cttatactgt ctccgttcac acatgatcgg agggtgtctc tatgtctcaa
      781 ttatttcgtt tggcatcgcc agaagattac gaatacatcg aagaattaaa tttatgggaa
      841 ttgtcatttg ataagcgacc ggttcaaggg gttcgttgtg aagatccggt gatcggggca
      901 gaaaaatata atcaagggcg tgaaaaattt aaggcgttag cgtcacggca taaaaaacac
      961 tggaaaccga acggattgac cttttcggag ttgatccgct gggcaataga atgcggaact
     1021 ccagaacaat gtcagcttgt tttagcgtta taccattgca caaacgatga tgattatcag
     1081 gcgatgggaa ttcagttaag ccgaagtatt gataatgcaa atgtcagtcc gatcatcttt
     1141 ttcacaggta aaaatcaacg gttattaggt gatatttcga tgctaaaaca gctcgaagaa
     1201 aaggtgcgct gacgttaggt ttacctatta ttttatgtat tatcctatct attattctat
     1261 ctcttatttt atctatttcg tctgtaatag gtagaataat acatagaata agatacagaa
     1321 taatagatag acacaagatg acgttgtgtt atttcttacc cattaatcca cctgttattc
     1381 tacctattac tttacccgtt attgcaccca atttaggtat aacgggcaga ataacgggtg
     1441 aaataatggg tagaatcata gttttactaa cttgcacccc atgatacttt cagtatcaat
     1501 gccactcatt ttctggacga aaatgaatga cataaggctc cgccctctgg ctattttctt
     1561 cggctggacg cctgcgaaaa aaaccattca cccaagcccg tcaaactcac tgcgttcgtc
     1621 tgaccacccc cttttttcgc ccctgtattt ggtcgctcaa aaatgtggtg gtcagacgct
     1681 tcgcttgacg gggggctttg cccccaaaac gaaacacgtt cactggggtt cacttgccat
     1741 cgctggggcg tgtcatttcg tttcggctcc ccctgttttt ccctttcttc gctggacgct
     1801 catcaggata aaaacaaaaa gcctaccgcc ctcgttttac tcggttggtc aaatcgcttc
     1861 ttgccacaaa acaagtttgt gactttcagc gatttcgcat cgttttactt gtcagtttgc
     1921 acgatgttaa aaacgcactc agaagcccgc aaaaccgttc taaactttca gcgtagattt
     1981 gggtgtttta tagggtgatc gtgtcttaaa atcgtttcga ggggctttaa tggggatgaa
     2041 cgggaggttt ttgctaacta actcgcccgt ttaacataaa agggattgta tgaatcaatt
     2101 ttagctagag tttaaggttg ttcaaattaa tgtacaatga ttgcactgta taaataacca
     2161 ggtgtagcat gtatggaaaa gcactttatc aatgaaaagt tttcacgaga tcaatttacg
     2221 gggaatagag ttaaaaatat tgccttttca aattgtgatt tttcaggggt tgatttaact
     2281 gatactgaat ttgttgattg tagtttttac gacaggaata gcttggaagg gtgtgatttt
     2341 aatagagcca aactaaaaaa cgctagcttt aaaagctgcg atttatcaat gagtaatttt
     2401 aaaaacatta gcgccttagg tcttgaaatt agtgagtgtt tagctcaagg agctgatttt
     2461 cgaggggcta attttatgaa tatgataact acaaggtcat ggttttgtag tgcttatata
     2521 accaagacaa atcttagtta cgctaatttt tctagagtca tattagaaaa gtgcgaactg
     2581 tgggaaaatc gctggaatgg cactgtgata actggcgccg tgtttcgtgg ctccgatctt
     2641 tcttgtgggg agttttcatc gtttgattgg tctttggctg att
//
