LOCUS       NZ_CP079816             1999 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC02_S465MC plasmid
            pS465MC_p9, complete sequence.
ACCESSION   NZ_CP079816
VERSION     NZ_CP079816.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115065
            Assembly: GCF_019334705.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC02_S465MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC02_S465MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:44:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,688
            CDSs (total)                      :: 5,562
            Genes (coding)                    :: 5,417
            CDSs (with protein)               :: 5,417
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 61 of 145
            Pseudo Genes (incomplete)         :: 79 of 145
            Pseudo Genes (internal stop)      :: 24 of 145
            Pseudo Genes (multiple problems)  :: 17 of 145
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079816.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC02_S465MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS465MC_p9"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            28..141
                     /locus_tag="KWL80_RS28575"
     CDS             28..141
                     /locus_tag="KWL80_RS28575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071653267.1"
                     /translation="MHEPPVQSDCCAFSGNYQLESNPERHDEAPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(348..824)
                     /locus_tag="KWL80_RS28305"
                     /old_locus_tag="KWL80_28280"
     CDS             complement(348..824)
                     /locus_tag="KWL80_RS28305"
                     /old_locus_tag="KWL80_28280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_077861907.1"
                     /translation="MTVLSTLNNLKSIPCINAFTGRANNSYLWRYVMEDHKDEFGATTI
                     KCFYLREEISEDYVSIYHSNKDYYEGMVRDVHKRIPVGKTKPAIYLSFDAAEVIEQVNK
                     PDKCIDIKDEGYPHLGLWYLFDINDEFTLIEVTTTILELSSFFQRNEGGVVVPL"
                     /name="hypothetical protein"
     gene            complement(824..1468)
                     /locus_tag="KWL80_RS28310"
                     /old_locus_tag="KWL80_28285"
     CDS             complement(824..1468)
                     /locus_tag="KWL80_RS28310"
                     /old_locus_tag="KWL80_28285"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044816498.1"
                     /translation="MKYINHCDSEDYYITNDSIDLGVRYDVSDYNKLELNDLRDPDLFK
                     VLGRAFVVVENSVWESWNDDVKTLDCSGDGYESILKHYESLELSGEFLLFFKKIRSAIS
                     VYNREYEFCTGDLEPSLQAIVQLIRYAPELAAKKDAQIYFDKKSECFGLIYKQTKKSKG
                     TLNLIVKTNNEIIFSFVRKVSGVVKVTGRAYIGDSLDNSIAIKSLFKMMEW"
                     /name="hypothetical protein"
     gene            complement(1470..1694)
                     /locus_tag="KWL80_RS28315"
                     /old_locus_tag="KWL80_28290"
     CDS             complement(1470..1694)
                     /locus_tag="KWL80_RS28315"
                     /old_locus_tag="KWL80_28290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071653266.1"
                     /translation="MSNKDSLERKVTPRKNEPVFPMALRVGIAEDICFLELVDFPEKES
                     GRVFYSIALTKKHAKNLIDGLNKFVESGD"
                     /name="hypothetical protein"
     Typing          29..141
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.228"
                     /coverage="100.0"
                     /evalue="5.82e-36"
ORIGIN
        1 taggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgactgctgc
       61 gccttttccg gtaactatca acttgagtcc aacccggaaa gacacgacga agcgccactg
      121 gcagcagcca ctggtaactg atttagagga gttagtcttg aagttatgtg ccagttaagg
      181 ctaaactgaa agaacgattt tggttactgc gctcctctaa ctagccagtt accttggttc
      241 atagagccgc aaactcttag aacctaagaa aaaccgcccc gcaaaggcgg tttttctttt
      301 tcaagaagag tactaggtca cacttgatga cgtcaagacg gttttcgcta aagaggaaca
      361 accacgccac cttcatttct ttgaaaaaaa gaggataatt ccaaaatagt tgtagtcacc
      421 tcaatcaaag taaattcatc attaatatca aataaatacc acaaacccaa gtgagggtaa
      481 ccttcgtcct ttatatcaat acatttatct ggtttgttaa cttgctcgat cacttccgct
      541 gcatcaaatg agagatatat ggcaggtttg gttttcccta cagggattct tttatgtaca
      601 tcccttacca ttccttcata ataatcttta tttgaatgat aaatagacac ataatcctct
      661 gaaatttcct ccctaagata aaaacactta atagttgtag cgccaaactc atctttatga
      721 tcttccataa cataacgcca taaatatgaa ttatttgctc tgcccgtaaa tgcattaata
      781 caagggattg atttgaggtt atttaaagtt gataacacag tcatcaccac tccatcattt
      841 taaataatga tttgatagca atggagttat caaggctatc gccaatatat gccctacctg
      901 taaccttaac cactccagaa acttttctaa caaaggaaaa aataatctcg ttatttgttt
      961 tcactattaa atttagcgtg cctttgcttt tcttagtttg tttatatata agcccaaaac
     1021 actctgattt tttatcaaag taaatctgag cgtctttttt tgcagcaagt tcaggggcat
     1081 acctaatcaa ctgaacaata gcctgcaaag atggttctag gtcaccagtg cagaactcgt
     1141 attctctatt ataaacagaa atggcacttc ttattttttt aaaaaacaat aagaattcac
     1201 ctgataattc taatgattcg taatgtttta aaattgactc ataaccgtca ccagagcaat
     1261 ctaatgtttt aacatcatca ttccaagact cccaaacaga attctcaaca acaacaaatg
     1321 ctcgacccaa aactttaaac aaatccggat ctcttaaatc atttagctct aacttattat
     1381 aatcagaaac atcataacga acaccgagat caatgctatc attagtaata taataatctt
     1441 cactatcgca gtggttaatg tatttcatac taatcacctg actcaacgaa tttattcaat
     1501 ccatcgataa ggttctttgc atgttttttg gttagagcta tggaataaaa aacccttcct
     1561 gattcttttt caggaaagtc cactaactct aaaaaacaaa tatcttcagc tatcccaact
     1621 cttagagcca tcgggaatac aggttcattt tttcttggtg ttacttttct ttctaaagaa
     1681 tctttattgc tcattataat accccgatag aaataaattt aagtttagaa cataaaaaat
     1741 aataccataa aacaacatct ttcatccaca atgctcattt aacattacat tggtcacttt
     1801 atggaatttt gtggccatga tttaacataa caccaaaatt gtacgcaccg ctaaaacggc
     1861 ctcagggcgt ttctgacggg aaaccggtaa aataggcaac aaaccacccg aaaacccgcc
     1921 agaaacgcgc aggctctgtt tttacggcat gcatgagtat gcacgcaagt gcatagcgcg
     1981 aaaattcacg ccattcagc
//
