LOCUS       NZ_CP079813             3264 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC02_S465MC plasmid
            pS465MC_p6, complete sequence.
ACCESSION   NZ_CP079813
VERSION     NZ_CP079813.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115065
            Assembly: GCF_019334705.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC02_S465MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC02_S465MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:44:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,688
            CDSs (total)                      :: 5,562
            Genes (coding)                    :: 5,417
            CDSs (with protein)               :: 5,417
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 61 of 145
            Pseudo Genes (incomplete)         :: 79 of 145
            Pseudo Genes (internal stop)      :: 24 of 145
            Pseudo Genes (multiple problems)  :: 17 of 145
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079813.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC02_S465MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS465MC_p6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            103..507
                     /locus_tag="KWL80_RS28260"
                     /old_locus_tag="KWL80_28235"
     CDS             103..507
                     /locus_tag="KWL80_RS28260"
                     /old_locus_tag="KWL80_28235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(601..1032)
                     /locus_tag="KWL80_RS28265"
                     /old_locus_tag="KWL80_28240"
     CDS             complement(601..1032)
                     /locus_tag="KWL80_RS28265"
                     /old_locus_tag="KWL80_28240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            1450..1707
                     /locus_tag="KWL80_RS28270"
                     /old_locus_tag="KWL80_28245"
     CDS             1450..1707
                     /locus_tag="KWL80_RS28270"
                     /old_locus_tag="KWL80_28245"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(1737..2795)
                     /locus_tag="KWL80_RS28275"
                     /old_locus_tag="KWL80_28250"
     CDS             complement(1737..2795)
                     /locus_tag="KWL80_RS28275"
                     /old_locus_tag="KWL80_28250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
ORIGIN
        1 ctcagcgcgt ttctgacgat gctgataacg gatgttatgg taaattatcc gcttgtctga
       61 aagctggctg ccgaagcaac caaggaaagg agaacagacc tgatgaccat tttagtgacg
      121 atacaggccc agctcgttgt cggggaggaa caggttataa agagcctcgc tcctgagggc
      181 atgctggccg ccgtgttcga agacgatggc cggaccgggt atttctatgc gctcgatgag
      241 tccgtcgagg gaaacccgat tatggacgca gtacacatct acaatgccga agacgtttca
      301 gacggtcaca ttccttctga tgttaaaatt ggctggtcag aagacagtca gaagtgcgta
      361 ctcctgatca atggataccc gcacggggca ttcgatttcg tgggaaaaaa cgggtactgc
      421 aggagtggtt atcctccccc tataaacaag gtgtggtctc tttccgggca tgagtggagc
      481 gactctgtgg atgatttttt ccggtgaatt acggcaggct atagcctgcc attatggttc
      541 gaaaaacgga tgttatggta aattcgtctg tgaagtaggt agacatttct aaagctagtt
      601 ttaatagcca agtctcttca attcagtcga gaggcgtttg aggcttacat caagattgct
      661 tttattttgt tttaactctt ttttcataaa ctcagtgtga tgtgctagct cagggttatc
      721 agttgagcga gtcacgggaa aatcatcact ggatgaaagt cgcccatttt tactgtagtc
      781 catggtgata cagatcagag ttgcaaggtc gattacccgg tgaagaggca gctcttctga
      841 ttgtcttgac catttttctc ctgtgtttcg ccaaaccttt gccgaaagct cagtccatcc
      901 aggagtgttc cattgagcaa tacctacaga tagccccata gcatcagtgt catcggcatg
      961 tgggccgtca atgcggtcgt aattttcgac ttgaataatt ggtttatgct tcaaatgcgc
     1021 gggtattttc atcagttcgt ccttaggtaa tgtttgtgat tattaaatta cattgttttt
     1081 ctaattataa aactcactaa atgtaagtaa atattaatat ctattgttat catgtgcttg
     1141 tgattttgtt tttccaattt tatgtttttt gcttggagag tagcggtgtt tttttgtgtc
     1201 aagtgttatg ataagccgta cgtttttttt ctggtttata gttcggttat tcacagcaat
     1261 gggcgtggtt ttctatgact acagataacg ttaggaatat tggcgactat aaaaagaaag
     1321 atgtcggggt ggatgctgac tgtaatccag tctcaggaaa cacaccacca gtcagactaa
     1381 gtgagaaact tagaaatgga attcctcctg gtttgaaaac tcagatgcgc caacaaatga
     1441 ggaaaaaaca tgggctctaa caataatcag aataaagatc tgcaggataa gcaagctgat
     1501 cttttggacc aaacgtatac tcttggttgg atggatggct atgccgaagg gtatgatgat
     1561 gctattgaag atactcagaa cgctttgaat aaactggaaa acgaaaacga gttgcttact
     1621 gaggttgttg aaagtaaaga taatgtaatc aaagagttgg cctctagtgc tggcagggcg
     1681 ctgcaagcag taaagaaaaa caaataaaaa aaggcccttt taagggcctt gctattttat
     1741 tcgatcatac cagcgagagc tacaatgttg gggacttgtt tatctagctg cgtctgatta
     1801 acctttatta tttttcctga aacagtttta tttcctgcag ttaatgtcgc gattggaata
     1861 cctaaggctc cagatacgac agatgctgtg tttgcatcat ttacttcata ctgaaacata
     1921 ttcctgaaag atcttttatt atttggcgtt gagctcccat ttgggtgaat acaaaacaga
     1981 cttggttttg tttgccatac tttccaaatt tcatcaccaa tttcggttac taccgtctta
     2041 aatgcactgg cagatgaatt gttcatttgc gttaatctat ttccaacata catatatatt
     2101 tgtggtagcg acatagaata acgattgcta ttaagataga aatctgattg tggttcattc
     2161 tgatggcgac gctcaccata aactaaagaa agtacagcct taactgctct ctttgatgaa
     2221 ccatcggcag agaaaggaat taaaaggcgc tctgctgcgg ttaaagctaa ctctgtataa
     2281 atagagaagc tagggttgca gtcaatgaat acgcagctat cttcattatt ccatgagttg
     2341 caaatgtcac tgattaaatc attaatccag aggtgaacag tacgccatgc atcatgggga
     2401 cctggaaatg atgccccaac aactcttgat gcttggagtt ctaattgttc atcgccagtg
     2461 acaagatata gattatttgg aactttacta ttgtgtgtag atacatttat tacatagcta
     2521 gaaccagtgt tggtaggaat atatggactt ctgatcctat cctcaatata tccagatatt
     2581 gtctttctct gtattgctga atgaatctgg tttagtgtgt tttcgccatt tatcattcca
     2641 ccaagtaaca tagaggacga gttcgcttgt gggcacaggt caaccaccag gaccttttta
     2701 gtagggttct gtctggcata ttcagaggct aactgaaaag taaggtaact tttccctaca
     2761 ccacccttgt tattccatac ggcatagatc gccatctata actcctaatc tagttttgtt
     2821 gttagcttag attcagggta ctagagatta ttgttctact gttagtttct ttcagctgac
     2881 tgcctttttt tggaacgata ttcagtcgaa ggggttggct ggctcaccat gacttatctg
     2941 gagttgtcga attccgatta aaaggatctt cttgagatcc taacctgcgg gatgtaatct
     3001 tttgctctgt aaacgaaaaa accacctggg gaggtggttt ttcgaaggat cagtaagttg
     3061 gggaacttct gaaccgtggt aacagggtgt acaagaccgc tgccaccaaa tctgtccttt
     3121 cagtttagct gtagttaggc tgtaacttca agaactctgc accagtaatt cttgtacacc
     3181 ccttaccagt ggctgctgcc agtggcgttt tgtcgtgcct tccgggttgg actcaagtcg
     3241 aaagttaccg gaacaggcgc agca
//
