LOCUS       NZ_CP079691             2101 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC30_AI1547MPCH
            plasmid pAI1547MPCH_P8, complete sequence.
ACCESSION   NZ_CP079691
VERSION     NZ_CP079691.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130732
            Assembly: GCF_019317245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC30_AI1547MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC30_AI1547MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:21:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,495
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 69 of 155
            Pseudo Genes (incomplete)         :: 87 of 155
            Pseudo Genes (internal stop)      :: 21 of 155
            Pseudo Genes (multiple problems)  :: 20 of 155
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079691.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC30_AI1547MPCH"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547MPCH_P8"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            7..972
                     /locus_tag="KW563_RS27385"
                     /old_locus_tag="KW563_27360"
     CDS             7..972
                     /locus_tag="KW563_RS27385"
                     /old_locus_tag="KW563_27360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            976..1242
                     /locus_tag="KW563_RS27390"
                     /old_locus_tag="KW563_27365"
     CDS             976..1242
                     /locus_tag="KW563_RS27390"
                     /old_locus_tag="KW563_27365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          401..632
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 ggcttaatgt cagaagataa attcctttcg gactacagcc cccgtgatgc agtttgggat
       61 acccagcgca cgcttaccga ttctgtcggg ggtatctacc agactgctgc tgaattcgag
      121 cgctatgcac tccgtatggc ctcctgtagc ggtttgttac gttttggttg gtctaccatc
      181 atggaaaccg gagaaacgcg cctacggctt cgtagtgcgc aattttgccg tgtccgtcat
      241 tgccctgtct gccagtggag aagaaccctc atgtggcaag cccgttttta tcaggctcta
      301 ccgaaaatcg ttgtggatta cccgtcttcc cgatggttgt ttctgacgtt aactgtcagg
      361 aactgcgaga taggtgaact tggaacagtc cttacagcaa tgaatgcggc gtttaagcga
      421 atggaaaagc gaaaggagct atcacctgtt caggggtgga tcagggctac ggaggtgacg
      481 cgaggtaagg atggcagcgc acatccgcat tttcactgtc tgctgatggt gcaaccttct
      541 tggtttaaag ggaagaacta cgttaagcac gaacgttggg tagaactctg gcgcgattgc
      601 ttgcgggtga actatgagcc gaatatcgat attcgggcag taaaaactaa gacaggtgag
      661 gttgtggcca acgttgccga gcaactgcaa agcgcggttg ctgaaacgct gaaatactcc
      721 gttaaaccgg aagatatggc aaacgatcct gagtggtttc ttgagctgac gcggcagctt
      781 cacaagcgcc gttttatctc gaccggtggg gcgctaaaaa acgtcctcca gttggatcga
      841 gaaaccaatg aggatcttgt cattgccgac gatgtagggg atggcactga tgacgggaag
      901 cggacggcgt ttgtctggga ttcaggtaaa cggcgttaca aacgcgcccc tgagaaggat
      961 aaatcggatt aacgtatgaa tattaatatt gaatacctga atggaaataa gactattggt
     1021 ttattttttt taagaagtga agcggtgatt cctgacaggt ttaaaaacct tattttgctt
     1081 attgatggat taagttttgg cacatttggt tttcatccgc acgaaggttt tgaggatgaa
     1141 ttaattttat atattcagaa aacaaacgag agggtaaaaa ctctttttgt gaaaatagat
     1201 ttaaacggta tcaagtttgg atttttaaga acgcattctt agttctggaa aagagccagc
     1261 ggcaggctga ggtgataggt acgagattgc atgcaatctc tagtgctctg tctatcctgc
     1321 attatcctca gcattatcct cagcattatc ctcagccttg ccaactcgac accaatgcag
     1381 gatagacaat ccgatgtcaa atgttaacac tctgcgagtg gtacattttc cccggattat
     1441 cgtcctgagc ctgccgctgg ctctctttct accgcctcgc tttgctcgtt gctcaacgcc
     1501 tcacagacac ggattaaaat ccgcatccgt tcaccgtttt ttaaagtccg ttaaaagcat
     1561 gatgccatct ccgagagtta atctcgtcaa atgctaaatc gtgggggtcc cctttggggt
     1621 tccgatttag tgattgacga caccaccgat taaaaaactt atgcggggtg gatggtttca
     1681 cgaagtgagg ccatccacct gtaagacagg gttttgtttt tattccctgt tttggtgatc
     1741 gggtgtgtgg aaaaggttgg ggtaagccgt tcgggggtgc ttgttttggg gggttaaaat
     1801 tgtggttatt ttttgcgcaa ttctcgcgcg tgatccttgt atttatactt aagggataaa
     1861 tggcggatat gaaatagtgg tttagcccag taatgacgag gctttgagtg ggttttgaca
     1921 ggtcaaagaa aatggagcag aattgaggcg tttttaatcg gcgttgggga gtgcgtcaac
     1981 actccccaac atttcgaatg tgtcacctca gcggcaaact ctggtgacat gtactggctc
     2041 gcaatgcaca ggtacgtgat gaatatacca catcaaatca cagcctgccc agatcggagc
     2101 a
//
