LOCUS       NZ_CP079690             2828 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC30_AI1547MPCH
            plasmid pAI1547MPCH_P7, complete sequence.
ACCESSION   NZ_CP079690
VERSION     NZ_CP079690.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130732
            Assembly: GCF_019317245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC30_AI1547MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2828)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC30_AI1547MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:21:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,495
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 69 of 155
            Pseudo Genes (incomplete)         :: 87 of 155
            Pseudo Genes (internal stop)      :: 21 of 155
            Pseudo Genes (multiple problems)  :: 20 of 155
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079690.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC30_AI1547MPCH"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547MPCH_P7"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            23..757
                     /locus_tag="KW563_RS27375"
                     /old_locus_tag="KW563_27350"
     CDS             23..757
                     /locus_tag="KW563_RS27375"
                     /old_locus_tag="KW563_27350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000155158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142428737.1"
                     /translation="MTIQEVKKPRVRTKTENDKLTEYKMNPFVFDKELKIETKTRNLTV
                     RKGTELVNKDNADESESYFSNIVQKKEVDKEEFIKLFTSQIKVYFDLTKTAHKIFLIIL
                     ALYQKEIGKDYVLLTCKKAQNVAKTLDFELSAPIFYRGIKELVEKKIIAKSVDKIVFYI
                     NPAVFFNGDRARFVTEVIKKKEEIEKKQFLEELETTSKNKDFETDDSVENLDLMIARLQ
                     KKKEELERKEKFGQWQDLEDAS"
                     /name="hypothetical protein"
     gene            complement(775..1881)
                     /gene="mobV"
                     /locus_tag="KW563_RS27380"
                     /old_locus_tag="KW563_27355"
     CDS             complement(775..1881)
                     /gene="mobV"
                     /locus_tag="KW563_RS27380"
                     /old_locus_tag="KW563_27355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791318.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_218423645.1"
                     /translation="MYSIIRKQSHKKTAIQAVHNHNMRIVIEENVNSKKSNLNEILIGT
                     ENTRSDIMSYIKNNDIVIRNKDTVIFNEFVLTASPEFFFNNKDGSKKTKSEYNDNLNEW
                     VKTQIEFLEKENYGKCVNAVLHLDESTPHIHALILPIRDNKLNNKSFWRGKNSYGRLQD
                     LYNASNSKFGLKRGEEKSKTLVDHTTLKDYRELIKQDLEEEKEFYNELSKDILDIPPRK
                     NFIGLEKKYSAEEVKEIASATFKKLNRQRRRAKFRAKKSDEKADAATSEFYKKKKETSK
                     IEFFYNENREKLEKISVENSTLKTQNLELKQSQSDLDLVRKFLPMELQSLVVRARELAS
                     GGDSGGTKHTAEPTSTADLTTYKRPKYK"
                     /name="mobV"
ORIGIN
        1 taaatttaaa gaggaataag ttatgacaat acaagaagta aaaaaaccaa gagttagaac
       61 aaaaacagaa aatgataaat taacagaata taagatgaat ccttttgttt ttgacaaaga
      121 actaaaaatt gaaacaaaaa caagaaattt aactgttaga aaaggtactg aattagtaaa
      181 taaagataat gctgacgaat cagaatccta tttttctaat attgttcaaa agaaagaagt
      241 agataaagaa gaatttataa aattatttac atctcaaata aaagtatatt ttgatctaac
      301 aaaaacagct cataaaattt tccttataat tttagcttta tatcaaaaag aaatcggtaa
      361 agattatgtt ttattgacat gtaagaaagc tcagaatgtt gctaaaacat tagattttga
      421 gctttcagca ccaatttttt atcgcggtat aaaagaactg gtagagaaaa aaattattgc
      481 taaatctgta gataaaattg ttttttatat aaatcctgca gttttcttta atggtgatag
      541 agcaagattt gtaactgaag ttatcaagaa aaaagaagag atagagaaaa aacaatttct
      601 cgaagagtta gaaactacat caaaaaataa agattttgaa actgatgata gtgttgaaaa
      661 tttagacctg atgattgcaa gattacaaaa gaaaaaagaa gaattagagc gaaaagaaaa
      721 attcgggcaa tggcaggatc tggaagatgc atcataaaag ccctgatggg ctttttattt
      781 gtatttaggt cttttatagg tagttagatc tgcagttgat gtaggttctg cagtatgctt
      841 tgtaccgcca gaatcgccgc cagaggccag ttctctggct ctgacgacaa ggctttgcag
      901 ctccataggt aaaaattttc tcaccagatc taggtcactt tgtgattgct taagctctaa
      961 gttttgggtt ttaagtgtgg aattttccac agagattttt tccaatttct ctcggttttc
     1021 attataaaag aactcaattt ttgatgtttc ttttttcttt ttataaaatt cacttgtagc
     1081 tgcatctgct ttttcatcag attttttagc tctaaatttt gctcttcttc tttgtctatt
     1141 tagtttttta aaagtagctg aagcaatttc ttttacttct tcagcagagt attttttttc
     1201 taagccaata aaattttttc ttggtggaat gtctaatata tctttcgata actcattata
     1261 aaattctttt tcttcttcta aatcttgttt gattaattct ctgtaatctt ttagtgttgt
     1321 atgatcaact aaagttttac ttttttcttc accacgtttt aaaccaaatt tactatttga
     1381 tgcattatat aaatcttgta atcttccata agaattttta cctcgccaga aagatttatt
     1441 gtttaatttg ttatcacgga taggtaaaat taatgcatga atatgaggtg ttgattcatc
     1501 aagatgcaaa actgcattaa cacattttcc gtaattttct ttttctaaaa actcaatttg
     1561 ggttttaacc cattcgttta aattgtcatt atattcagat ttggtttttt ttgaaccatc
     1621 tttattgtta aagaaaaatt ctggtgatgc agttaaaacg aattcgttaa aaattactgt
     1681 gtctttattt ctaatgacaa tatcattatt tttaatataa ctcattatgt cagatcttgt
     1741 attttccgta ccaattaata tttcattcaa atttgatttt ttagaattta cattctcctc
     1801 tataactatt ctcatattat gattatgtac agcttgtata gctgtttttt tgtgtgattg
     1861 tttcctgatt attgaataca tttttatttc tccatattaa tatacaaccc ccattttttt
     1921 ggataaatcc aatattatga gaatgtcgga aacattctca tgtggcgtta aatgccacct
     1981 gtgcagctgt gtaaggtttt gacgttgaac cggtgcaaac cggttcgggg cttgggtggg
     2041 ctatgccccc caacgaacga ctgagcgtag ctcggtctag tgagtgatag accgaaagta
     2101 aactcaacgt atatatttaa agttatcact ttaatatatt ctgtcaaata gctaccgcct
     2161 cgcctaacgg ctcgttgctg aatccttttt aaagcaaaag taaactttta ctttaaaaat
     2221 gattgatcac aataataata aaatacatga acaaaaaaga cgggttgcga tgtgggcaag
     2281 ttcttgacca ctcgcagggg tggggggacc cggaacaaga gtacttgttc tggtgggggg
     2341 aacgggttta ggggttcccc ccagtagctg tagaacgctc tctaacgctc tatgacgggt
     2401 ttttgtagtt acttaaaccg tgagagtcca cgtacagctt gctgtatgtg gattcgaggg
     2461 gttggcctgc ccggcgaggg cggttttaga ttttgatttt actcttagat cttaatattt
     2521 attaattctt gcagaaaaac tcaaatccta aaactcctct ctaagccttg gtacgtctgg
     2581 ttttactcca ttttttctaa aaaacaaaaa gtacaaagtt ttatactcta tccttaaaaa
     2641 agtaacgata gagtaataag ttttatactc tagagtaata aactttatcg ttttgcaccc
     2701 ataaaaacga taaacaggct aaaatttcta gaattttatt tatcgtttta agcctcaaaa
     2761 acgatttttt tttatcgttt tgtattgact tgtttaaaaa atcggttata acgctagtat
     2821 taagtatc
//
