LOCUS       NZ_CP079689             3991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC30_AI1547MPCH
            plasmid pAI1547MPCH_P6, complete sequence.
ACCESSION   NZ_CP079689
VERSION     NZ_CP079689.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130732
            Assembly: GCF_019317245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC30_AI1547MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC30_AI1547MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:21:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,495
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 69 of 155
            Pseudo Genes (incomplete)         :: 87 of 155
            Pseudo Genes (internal stop)      :: 21 of 155
            Pseudo Genes (multiple problems)  :: 20 of 155
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079689.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC30_AI1547MPCH"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547MPCH_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            complement(join(3888..3991,1..58))
                     /locus_tag="KW563_RS27355"
                     /old_locus_tag="KW563_27330"
     CDS             complement(join(3888..3991,1..58))
                     /locus_tag="KW563_RS27355"
                     /old_locus_tag="KW563_27330"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_227631059.1"
                     /translation="MAKFIQNQSLLLLDKLNELDLDVEADLCEKLHDDAEHLFRTLSSR
                     LDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(835..1809)
                     /locus_tag="KW563_RS27360"
                     /old_locus_tag="KW563_27335"
     CDS             complement(835..1809)
                     /locus_tag="KW563_RS27360"
                     /old_locus_tag="KW563_27335"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_114269875.1"
                     /translation="MAFFNLLFVASLICFGGVMGSYSRGCRDSQNKFSKDKDENNKRAS
                     VYRFGIASAFICVPFISSFLHVDYSSIIFPVADGGGTKFIEQILLLISVSGISAYLGYA
                     LLDGLANKVLKEQVDGIDKKQQDLEAEQDEFKDELDRSKELIEQLEMDKKTTKFELGYF
                     KAISAVDKAESMMSIPDEALSVKKKLTEALDAVTESLSLVKREDVAKDDYDKLLVLKAY
                     ILKRLDRIDDALSITDELLMSNEDNPILIYNKACYQYILRRCQADNSDIKDMIRRALTI
                     KVTDPEFIRRQEKIRTKVIGNKDNDLEGLFTDAELEELKVAIK"
                     /name="hypothetical protein"
     gene            complement(2390..2662)
                     /locus_tag="KW563_RS27365"
                     /old_locus_tag="KW563_27340"
     CDS             complement(2390..2662)
                     /locus_tag="KW563_RS27365"
                     /old_locus_tag="KW563_27340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            complement(3466..3888)
                     /locus_tag="KW563_RS27370"
                     /old_locus_tag="KW563_27345"
     CDS             complement(3466..3888)
                     /locus_tag="KW563_RS27370"
                     /old_locus_tag="KW563_27345"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_040214596.1"
                     /translation="MAIVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          137..608
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.777"
                     /coverage="92.0"
                     /evalue="7.8799999999999974e-146"
ORIGIN
        1 caagctcgtt aagcttatcc agcaggagca gagactgatt ctggatgaat ttagccatgt
       61 tcagcgctgt tttctgttgt tttgtcataa gaagcctcag agcgtcagtg ctcaatgtca
      121 aactagtctc ttttccgctt cctcgctcac tcagtcgcta cgctccagcc gttcggctgc
      181 ggcgagcggc aggagcgtgt acataaaaac gtaggcaacc aagatatgag gcagaaaagc
      241 aaaggccgcc gaacggctgt ttttccatag gctccgcccc cctgacaagc atcgcggaaa
      301 cggacgctca aatcagtggt ggcgaaaccc gacaggactt aaagatacca ggcgtttccc
      361 cctggtggct ccctcgtgcg ctctcctgtt cctgcctttc ggtttaccgg tgtcattccg
      421 ctgttatggc cgcgttttct cattccatgc ctgatactcg gctccgggaa ggcagttcgc
      481 tccaagctgg actgtatgca cgaacccccc gttcagtccg actgctgcgc ccgttccagt
      541 aactatctct tgagtccaac ccggaaagac acgacttatc gccattggca gcagccactg
      601 gtaattgatt tagaggagtt agtcttgaag ttatgcgcca gttaaggcta aactaaacga
      661 actgttttgg tgactgcgct cctctaagcc agttacctcg gttcagaaac ttgccggtta
      721 ctgaaccttc gaaaaaccac cttgccgggt ggttttttcg tttgaggggt agagtacgct
      781 gcacctcaaa ggatcgtcaa ggatcttttt ggaattcata gagctagcca ctgcctattt
      841 gatagccacc tttaattcct ccagctcagc gtcagtaaac aacccttcaa gatcattatc
      901 tttatttcct atgaccttgg ttcttatttt ttcttgcctg cgaatgaatt caggatctgt
      961 aactttaata gtcagagccc tgcgaatcat atccttaata tcggagttat cagcttggca
     1021 acgacgcaaa atatattgat agcaagcctt attgtaaata agtatagggt tatcctcatt
     1081 actcataagt aactcatccg taattgacag agcatcatca atacgatcaa gtcttttcaa
     1141 aatataagct ttaagcacta agagcttgtc gtagtcatcc ttagctacat cctctctttt
     1201 aacaagagac aatgattccg ttacagcatc taatgcctca gttagttttt tcttaacaga
     1261 aagagcctca tccggaatgg acatcattga ttctgcttta tccacagctg aaatggcttt
     1321 aaagtatcct agctcgaatt ttgttgtttt cttatccatt tcaagctgtt ctatcagctc
     1381 cttgctccta tcaagctcat ctttaaactc atcttgttca gcctccaaat cttgttgctt
     1441 tttatctata ccgtctactt gctcttttaa tactttgttg gcaagaccat ccagtaatgc
     1501 gtacccaaga tacgcagaga tccccgaaac agaaataaga agcaatattt gttctatgaa
     1561 cttagttcca ccaccatcag ccacaggaaa tattatactt gagtaatcaa catgaagaaa
     1621 tgatgatatg aaaggaacac aaataaatgc ggatgctata ccaaatctat aaacactagc
     1681 tcttttatta ttctcatcct tatcttttga aaatttattt tgggagtctc ggcaacctct
     1741 ggaatagctc cccataacac caccaaaaca aattagagat gcaacaaaca ataggttaaa
     1801 aaaagccatg agagaatcct tgcgcaaagc aaacaataaa actttgttca ggtaagttaa
     1861 gataagctca atcatatact aaccaataac aaaaaaggca gccttggctg cctttttctg
     1921 ctgacttgac acttacaagt ctggacgctc atcgtgaagt ttgatttttt tcatagagca
     1981 cctctcatta attgttcctt tgcaagccca tgcttgctta gcgctgaata tagggcataa
     2041 acccagcact cacaacaaca aaaatgctta aaatgataaa atcaacccat gtattgacat
     2101 tgggtgaaaa aaaaagtata atgcactggt agccaaaggg gcggggcttc gcttattcct
     2161 taggaataag cgaagccccg cccctttggc taccataatt aaatgattga atttaaagga
     2221 tttttttaca ataacatcct tcctctcaat agtcatataa acatgcccca tgtattcgtc
     2281 attctggatt tttcaaaaga atgaatgcgt gcatttacca taacgcctca tttcacgcag
     2341 atatgaaaaa gcccgcacaa ggcgggcttc agactcaaca gatacggaat cactctgtga
     2401 aaaactgctt tgccatgggg tgattctgca tgatctcgtc acgttcttcc gggtcaaagc
     2461 acccacagac acccagcaga accggctctg tcagcattcc ggcacagcat cccgtggtga
     2521 cctgtatttt acctttccgg tcatacccaa aaacggtgta ggtcacatca tcctcatcat
     2581 agacttcatg acagatggag catgagtccg ggtatttttt gatgagtgca ttaatttctt
     2641 ttacctgagc gtcagtagcc aaaacatctc cctgagtcac tgattatcac aatccgctga
     2701 ctctaacaca gactcaggca tccgccgttg atttaccata acgtcccatt acacgcaccg
     2761 ctaaaacggc ctcagaacga ttctggggcg taacccatta aatcctacgt cttaccccct
     2821 gaaaacgcct caaaatcgct ccagggcgtt ttacgggcat gaatcgttat gcacttgact
     2881 gactgtctgg ggatttcagc ctgaattcag gccaggcaac tcaaaacccg caccaaacca
     2941 gactgaaaac ggtgaacggg tgcgcaattt attgcgtggc cgtgaagcgt tgccggcgca
     3001 gccggaaaac cggttttcag cacgttcagg aatcgggttt gtcgagacca gcaatcacat
     3061 tatggcaagt cgccggacga ctcaccacac gattcaccgg cgattcgact cgtgacttga
     3121 ctctagagtc gccatggtca aaaagccacc aacccggcaa gtcgactcta gagtcaagtc
     3181 atcataacgt actgattata tggcgtgatt cacatatgaa tcgtgggcaa gtcatcggcg
     3241 attcgccata gagtcgtcca cgactcggat tcaccttaca aaaaataaaa ttgcgtaatt
     3301 taaaatagat aactgattga aaataaaggt ctatctgcaa aattttaatt ttgcgtagtg
     3361 tgtgggtatt tttagtggtg aggagcgttc agggatctga cgatttttgg gaaggttcag
     3421 gaactccccg gaatggccgg agagcaaaat ggaagcatgg cgggatcagg attttttcca
     3481 gaatttccac cacggggaat ggggtggtga agaaggttcg tgcttgtgct ccagaagctg
     3541 catagcctga cgaagggaat caatatgctc atctcgagcc ttaacagccc ctttaagacc
     3601 atcgttttca gcttcaagta aagcgattct atgttgtaaa tcatgtaaac caacgctgtt
     3661 aatacctgta gattctgcgt cactttttac atcatatttt acagtatcga ttacaccatc
     3721 aagagaacca aacactctaa ttagctctga agtatcaata actttaatag ctttcccgtg
     3781 ctttaccaca gaggtgtaac ttaacttccc actgttaatc atcttgtaaa ttgtggggcg
     3841 actaacctta acaagccgtg ccgcttcact aatagacact atggccatca gttaccatcc
     3901 tgtaattcat ccagtctcga ggacagtgta cggaaaagat gctccgcatc atcatggagt
     3961 ttctcacaaa ggtcggcctc gacatcgaga t
//
