LOCUS       NZ_CP079682             1137 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC29_CMC309MPCH
            plasmid pCMC309MPCH_P9, complete sequence.
ACCESSION   NZ_CP079682
VERSION     NZ_CP079682.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130677
            Assembly: GCF_019317225.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC29_CMC309MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC29_CMC309MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 64.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:10:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,422
            CDSs (total)                      :: 5,303
            Genes (coding)                    :: 5,153
            CDSs (with protein)               :: 5,153
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 67 of 150
            Pseudo Genes (incomplete)         :: 82 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 23 of 150
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079682.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC29_CMC309MPCH"
                     /isolation_source="Endotracheal aspirate"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pCMC309MPCH_P9"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian medical college"
     gene            complement(148..1128)
                     /locus_tag="KW562_RS26955"
                     /old_locus_tag="KW562_26940"
     CDS             complement(148..1128)
                     /locus_tag="KW562_RS26955"
                     /old_locus_tag="KW562_26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000019445.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element ISKpn26 family transposase"
                     /protein_id="WP_000019473.1"
                     /translation="MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMVEVIEPFY
                     PKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTT
                     IMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPE
                     MHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAG
                     YQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRI
                     IKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ"
                     /name="IS5-like element ISKpn26 family transposase"
ORIGIN
        1 ggaaggtgcg aataagcagg tcatttcttc ccaagctgac tcgctgatta aaatttcgcg
       61 gatctgggcc gatttttttc ccgcaaacac atcgaatcag cctatttagg ctattttttc
      121 caccatttct ggcgttattt ccggttttta ctgagatctc tcccactgac gtatcatttg
      181 gtccacccga aacaggttgg ccagggtgaa taacatcgcc agttggttat cgtttttcag
      241 cagccctttg tatctggctt tcacgaagcc gaactgccgc ttgatgatgc gaaacgggtg
      301 ctccaccctg gcacggatgc tggctttcat gtattcgatg ttgatggccg ttttgttctt
      361 gcgcggatgc tgcttcaagg tttttacctt gccgggacgc tcggcgatca gccagtccac
      421 atccacctcg gccagctcct cgcgctgtgg cgctccttgg tagccggcat cggctgagac
      481 aaattgctcc tctccatgaa gcagattacc cagctgattg aggtcatgct cgttggccgc
      541 ggtggtgact aggctgtggg tcaggccact cttggcatcg acaccaatgt gggccttcat
      601 gccaaagtgc cactgattgc ctttcttggt ctgatgcatc tccggatcgc gttgctgctc
      661 tttgttcttg gtagagctgg gtgcctcaat gatggtggca tccaccaaag tgccttgggt
      721 catcatgacg cctgcttcgg ccagccagcg attgatggtc ttgaacaatt gacgggccag
      781 ttgatgctgc tcgagcaggt ggcggaaatt catgatggtg gtgcgatccg gcagggcgct
      841 atccagggat aatcgggcaa acaggcgcat ggaggcgatt tcgtacaggg catcttccat
      901 ggcaccgtcg ctcaggttgt accaatgctg catgcagtga atacgcagca tggtctccag
      961 cggatagggc cgtcggccat tgcccgcctt gggataaaac ggctcgatga cttccaccat
     1021 gttttgccat ggcagaatct gctccatgcg ggagaggaaa atctcttttc gggtctgacg
     1081 gcgcttagtg ctgaattcac tatcggcgaa ggtgagttga tggctcatga tgtccct
//
