LOCUS       NZ_CP079681             1209 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC29_CMC309MPCH
            plasmid pCMC309MPCH_P8, complete sequence.
ACCESSION   NZ_CP079681
VERSION     NZ_CP079681.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130677
            Assembly: GCF_019317225.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC29_CMC309MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC29_CMC309MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 64.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:10:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,422
            CDSs (total)                      :: 5,303
            Genes (coding)                    :: 5,153
            CDSs (with protein)               :: 5,153
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 67 of 150
            Pseudo Genes (incomplete)         :: 82 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 23 of 150
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079681.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC29_CMC309MPCH"
                     /isolation_source="Endotracheal aspirate"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pCMC309MPCH_P8"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian medical college"
     gene            complement(<2..94)
                     /locus_tag="KW562_RS26945"
                     /old_locus_tag="KW562_26930"
                     /pseudo=""
     CDS             complement(<2..94)
                     /locus_tag="KW562_RS26945"
                     /old_locus_tag="KW562_26930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227563.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase modifying factor 1"
                     /name="sulfatase modifying factor 1"
     gene            complement(270..1163)
                     /locus_tag="KW562_RS26950"
                     /old_locus_tag="KW562_26935"
     CDS             complement(270..1163)
                     /locus_tag="KW562_RS26950"
                     /old_locus_tag="KW562_26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="WP_004180402.1"
                     /translation="MRKLIVVASVAAGLLTGCDQKSTGKRETLSEALVAKSLSNMVPVK
                     GGEFLMGDFGPLVGQKLPFSINQDDKVLHKVVLSDFSISKFKVTNDDYNKYLQITGVKK
                     SPIHIFLKNYPSLQKGDYSVGVTWQQAKDYCQWLGKGSGKKIDLPTEAQWEYAARSRGQ
                     YFQFPTNNGEYLPGKNVPGKDELDIYTDGFGFPFYPVGKYPPNPLGLYDMGLSGSEWTN
                     DWYAADYYSHSPVNDPQGPAQGTKKVLRGYIGGDRQYALTMFRQSKLPVPKIDKDDDYE
                     KYGVGPQYVFRCVVNK"
                     /name="SUMF1/EgtB/PvdO family nonheme iron enzyme"
ORIGIN
        1 tttcagacaa ggtttcacgc ttgtcagtac tcttctggtc gcacccgagc agtaaactgg
       61 cggcaacaga agcaactacg attaattttc tcatcttatc accttcacca ttgcatcagg
      121 cagtcattgt acccgtcggg tgcagctcat caatcatggc aagatattct gacatcagga
      181 aatccgggat agattaaata tcctatccgg ttcagccgaa tattcgttga gcattctgat
      241 tcgattaaaa taagagatgg catcacacat tatttattaa cgacacaacg aaatacatac
      301 tgcggaccaa caccatattt ttcatagtca tcgtctttat cgatcttcgg aactggcaat
      361 tttgattgcc tgaacatggt taaagcgtac tgtctgtcgc caccaatata tccacgcagg
      421 acttttttag taccctgcgc aggtccctgg ggatcgttta ccggtgaatg agagtaataa
      481 tctgctgcat accagtcatt agtccattca gagccactga gccccatatc atacagaccc
      541 agggggtttg ggggatattt gcctactgga taaaatggga aaccaaaacc atctgtatat
      601 atatctaatt catctttacc cggaacattt tttccaggta aatactcacc attatttgtt
      661 ggaaactgaa agtattgacc tctggatctt gctgcatatt cccattgcgc ctctgttggt
      721 aaatcaatct ttttaccaga ccccttacct aaccactgac aatagtcttt tgcctgttgc
      781 caggtaacac caacagaata atctcctttt tgcaaggatg gataattttt taaaaaaata
      841 tggatgggtg atttttttac ccctgttatt tgcagatatt tattataatc atcgttggta
      901 actttaaact ttgatatcga aaaatcactt aatacaacct tatgtaatac cttatcatcc
      961 tggtttatgc tgaaaggtag tttttgaccg actaatgggc caaaatcccc cattaagaac
     1021 tcgccgccct taacgggaac catgttagaa agcgacttag caacaagcgc ttcagacagg
     1081 gtttcacgct tgccagtact cttctggtcg cacccggtca gtaaaccggc tgcaacggaa
     1141 gcaactacga ttaattttct catcttatca cctcagccat tgcatcaggc agtcattgtc
     1201 cccgtcggg
//
