LOCUS       NZ_CP079680             2095 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC29_CMC309MPCH
            plasmid pCMC309MPCH_P7, complete sequence.
ACCESSION   NZ_CP079680
VERSION     NZ_CP079680.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130677
            Assembly: GCF_019317225.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC29_CMC309MPCH
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC29_CMC309MPCH
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 64.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:10:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,422
            CDSs (total)                      :: 5,303
            Genes (coding)                    :: 5,153
            CDSs (with protein)               :: 5,153
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 67 of 150
            Pseudo Genes (incomplete)         :: 82 of 150
            Pseudo Genes (internal stop)      :: 29 of 150
            Pseudo Genes (multiple problems)  :: 23 of 150
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079680.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC29_CMC309MPCH"
                     /isolation_source="Endotracheal aspirate"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pCMC309MPCH_P7"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian medical college"
     gene            join(1828..2095,1..8)
                     /locus_tag="KW562_RS26930"
                     /old_locus_tag="KW562_26915"
     CDS             join(1828..2095,1..8)
                     /locus_tag="KW562_RS26930"
                     /old_locus_tag="KW562_26915"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050885152.1"
                     /translation="MASKRPRTTLLLTDELMTAIRSLSDVSGMTMSSIVVQFLEPSIPV
                     MKQLEEIVLEAKKGAAGNGRAIVGSILEGANKTLAELNREFGELDD"
                     /name="hypothetical protein"
     gene            1..1041
                     /locus_tag="KW562_RS26935"
                     /old_locus_tag="KW562_26920"
     CDS             1..1041
                     /locus_tag="KW562_RS26935"
                     /old_locus_tag="KW562_26920"
                     /inference="COORDINATES: protein motif:HMM:TIGR01629.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_159174367.1"
                     /translation="MIDWITAIVPCFHETPLDSGRITKINSSGEIEWESLTAISVVGSH
                     DSSLRLKTHSINDFGNGTHIYFDGNPVKFLQGHNLFGTDNLIPLLCCVLKKITSIPELG
                     LNPTDFDVRSWEKGDFKLNRVDCTVMFDVGNTANALSWIRQAEMNATLSHRGRGQVTKG
                     STLYFGKSSRRSSVKFYAKGEEFQKHSHAAFLQLPALVDYANRGLRCEVVLRSLELNHR
                     GLSSGSAWDDLLPLQIVNDFIGRINMADITAITSDRLDGLTPSFKNVYELWKCGYDIRS
                     MHSKTAFYRYRKGLMDALGIDIATVQYKQPDNVVPFIRIIEAKPMGVPDWAIGTDLYFD
                     GAVNHG"
                     /name="phage/plasmid replication protein, II/X family"
     gene            1034..1273
                     /locus_tag="KW562_RS26940"
                     /old_locus_tag="KW562_26925"
     CDS             1034..1273
                     /locus_tag="KW562_RS26940"
                     /old_locus_tag="KW562_26925"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_074146588.1"
                     /translation="MAKKNKMTVLFCFKHNSSGLLYSRETPDNLTADDKKALYLPTVPT
                     GADFEEFLGSENARLVERMQADPAYSLRFSFRFP"
                     /name="hypothetical protein"
ORIGIN
        1 atgattgatt ggatcactgc tattgttcct tgtttccatg aaaccccttt agattctggg
       61 cgaatcacta aaatcaactc atccggtgag attgaatggg agtctcttac cgctatttct
      121 gttgttggta gccatgattc atcattaaga cttaaaaccc attctattaa tgactttggt
      181 aacgggactc atatttattt tgatgggaat ccagttaaat tccttcaagg ccataacctt
      241 tttggaacgg ataatttaat tccattgctt tgctgcgtat tgaagaaaat aacctctatt
      301 cctgagcttg gacttaatcc aactgatttt gatgttcgtt cttgggaaaa gggggatttc
      361 aagttaaacc gcgttgactg tactgttatg tttgatgttg gcaatactgc taacgcactg
      421 tcttggattc gtcaggccga gatgaatgcc actctttctc atcgtgggcg tggtcaggtt
      481 actaaaggat ctacgttata ctttggtaag tcgtcgcgcc gtagctcagt gaaattctat
      541 gctaagggtg aggaattcca aaagcactct cacgcagctt tcttacagct tcctgcgctc
      601 gttgactacg ctaatcgtgg tttgcgttgt gaggttgttt tacgttcgct tgagcttaat
      661 catcgcggtc tttcttccgg ttcggcatgg gatgacttgc ttcctctgca aatagtaaat
      721 gattttatag gacgtattaa catggctgac attactgcta tcacttctga taggcttgat
      781 ggtttaaccc cttcatttaa gaacgtctac gagctttgga agtgtggtta tgatattagg
      841 tctatgcact ctaaaactgc tttttatcgt tatcgtaaag gtcttatgga tgccttgggt
      901 attgatattg ccactgtcca atacaagcag cctgataatg tcgttccctt catacgcatc
      961 atagaggcta agcctatggg tgtacctgat tgggctattg gcactgattt atattttgat
     1021 ggggctgtta atcatggcta aaaaaaacaa aatgactgtt cttttttgct ttaaacataa
     1081 ttcctctggc cttctttatt cccgcgagac gcctgataat ttaacggcag atgataaaaa
     1141 agccctttat cttcctaccg ttcccaccgg cgctgatttt gaggagtttt taggttctga
     1201 aaatgcccgt ttggtagagc gtatgcaagc tgacccagct tatagccttc gctttagttt
     1261 caggttccct tgatagacgc ctcgcgctct cagattgaaa tctgacagcg ttcgccgccg
     1321 ccgactcgtc aactgctaaa tcgggggatc ccttcagggt tccgatttag tggttgtacg
     1381 acactcccta ttcatcctag ttatgggtga tggttcacat ggtgagccat cgccctgtaa
     1441 agccgctttt tacccccttc aaggcgttgc ctgtggggta ggtgcgtaag ccctgcccta
     1501 caggtgatgc cgtgggggta ttttcgtttt gctcggtatg ccttatttgt agatttgcaa
     1561 ctctgtccag ggtgataggg tttgtcgtgc gatcacgaat cgggacgggg attgcccccg
     1621 cagctctgcg aggaggcata cgccgttctg attcgcatcc tcgccattac cgatctcgat
     1681 gtgcagtgtc tgtaatactg cacatttgtc ccgattgcgg aactactcac cccttattgc
     1741 atttcttttt tccttccttt agtattgatt catacggttc acaccccact gcacactttg
     1801 tcccgatttc ggtacttgag gttttatatg gcatctaagc gcccgcgcac cacgcttctt
     1861 cttactgatg agttgatgac tgcaattcgt tctctttctg atgtatctgg catgaccatg
     1921 tcgtcgattg ttgttcaatt tttagagcca tcaatccctg ttatgaagca gctagaggag
     1981 attgtcttgg aggctaagaa aggtgctgct ggtaatggta gggctattgt tggttctatt
     2041 cttgagggtg ccaataaaac tcttgccgag cttaacaggg aatttggaga gttag
//
