LOCUS       NZ_CP079654             1999 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC24_S468MC plasmid
            pS468M_P9, complete sequence.
ACCESSION   NZ_CP079654
VERSION     NZ_CP079654.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130528
            Assembly: GCF_019317165.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC24_S468MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC24_S468MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 65.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,644
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,380
            CDSs (with protein)               :: 5,380
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 60 of 138
            Pseudo Genes (incomplete)         :: 73 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079654.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC24_S468MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS468M_P9"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            306..530
                     /locus_tag="KW559_RS28075"
                     /old_locus_tag="KW559_28050"
     CDS             306..530
                     /locus_tag="KW559_RS28075"
                     /old_locus_tag="KW559_28050"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071653266.1"
                     /translation="MSNKDSLERKVTPRKNEPVFPMALRVGIAEDICFLELVDFPEKES
                     GRVFYSIALTKKHAKNLIDGLNKFVESGD"
                     /name="hypothetical protein"
     gene            532..1176
                     /locus_tag="KW559_RS28080"
                     /old_locus_tag="KW559_28055"
     CDS             532..1176
                     /locus_tag="KW559_RS28080"
                     /old_locus_tag="KW559_28055"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044816498.1"
                     /translation="MKYINHCDSEDYYITNDSIDLGVRYDVSDYNKLELNDLRDPDLFK
                     VLGRAFVVVENSVWESWNDDVKTLDCSGDGYESILKHYESLELSGEFLLFFKKIRSAIS
                     VYNREYEFCTGDLEPSLQAIVQLIRYAPELAAKKDAQIYFDKKSECFGLIYKQTKKSKG
                     TLNLIVKTNNEIIFSFVRKVSGVVKVTGRAYIGDSLDNSIAIKSLFKMMEW"
                     /name="hypothetical protein"
     gene            1176..1652
                     /locus_tag="KW559_RS28085"
                     /old_locus_tag="KW559_28060"
     CDS             1176..1652
                     /locus_tag="KW559_RS28085"
                     /old_locus_tag="KW559_28060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_077861907.1"
                     /translation="MTVLSTLNNLKSIPCINAFTGRANNSYLWRYVMEDHKDEFGATTI
                     KCFYLREEISEDYVSIYHSNKDYYEGMVRDVHKRIPVGKTKPAIYLSFDAAEVIEQVNK
                     PDKCIDIKDEGYPHLGLWYLFDINDEFTLIEVTTTILELSSFFQRNEGGVVVPL"
                     /name="hypothetical protein"
     gene            complement(1859..1972)
                     /locus_tag="KW559_RS28335"
     CDS             complement(1859..1972)
                     /locus_tag="KW559_RS28335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071653267.1"
                     /translation="MHEPPVQSDCCAFSGNYQLESNPERHDEAPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(1860..1972)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.228"
                     /coverage="100.0"
                     /evalue="5.82e-36"
ORIGIN
        1 gctgaatggc gtgaattttc gcgctatgca cttgcgtgca tactcatgca tgccgtaaaa
       61 acagagcctg cgcgtttctg gcgggttttc gggtggtttg ttgcctattt taccggtttc
      121 ccgtcagaaa cgccctgagg ccgttttagc ggtgcgtaca attttggtgt tatgttaaat
      181 catggccaca aaattccata aagtgaccaa tgtaatgtta aatgagcatt gtggatgaaa
      241 gatgttgttt tatggtatta ttttttatgt tctaaactta aatttatttc tatcggggta
      301 ttataatgag caataaagat tctttagaaa gaaaagtaac accaagaaaa aatgaacctg
      361 tattcccgat ggctctaaga gttgggatag ctgaagatat ttgtttttta gagttagtgg
      421 actttcctga aaaagaatca ggaagggttt tttattccat agctctaacc aaaaaacatg
      481 caaagaacct tatcgatgga ttgaataaat tcgttgagtc aggtgattag tatgaaatac
      541 attaaccact gcgatagtga agattattat attactaatg atagcattga tctcggtgtt
      601 cgttatgatg tttctgatta taataagtta gagctaaatg atttaagaga tccggatttg
      661 tttaaagttt tgggtcgagc atttgttgtt gttgagaatt ctgtttggga gtcttggaat
      721 gatgatgtta aaacattaga ttgctctggt gacggttatg agtcaatttt aaaacattac
      781 gaatcattag aattatcagg tgaattctta ttgtttttta aaaaaataag aagtgccatt
      841 tctgtttata atagagaata cgagttctgc actggtgacc tagaaccatc tttgcaggct
      901 attgttcagt tgattaggta tgcccctgaa cttgctgcaa aaaaagacgc tcagatttac
      961 tttgataaaa aatcagagtg ttttgggctt atatataaac aaactaagaa aagcaaaggc
     1021 acgctaaatt taatagtgaa aacaaataac gagattattt tttcctttgt tagaaaagtt
     1081 tctggagtgg ttaaggttac aggtagggca tatattggcg atagccttga taactccatt
     1141 gctatcaaat cattatttaa aatgatggag tggtgatgac tgtgttatca actttaaata
     1201 acctcaaatc aatcccttgt attaatgcat ttacgggcag agcaaataat tcatatttat
     1261 ggcgttatgt tatggaagat cataaagatg agtttggcgc tacaactatt aagtgttttt
     1321 atcttaggga ggaaatttca gaggattatg tgtctattta tcattcaaat aaagattatt
     1381 atgaaggaat ggtaagggat gtacataaaa gaatccctgt agggaaaacc aaacctgcca
     1441 tatatctctc atttgatgca gcggaagtga tcgagcaagt taacaaacca gataaatgta
     1501 ttgatataaa ggacgaaggt taccctcact tgggtttgtg gtatttattt gatattaatg
     1561 atgaatttac tttgattgag gtgactacaa ctattttgga attatcctct ttttttcaaa
     1621 gaaatgaagg tggcgtggtt gttcctcttt agcgaaaacc gtcttgacgt catcaagtgt
     1681 gacctagtac tcttcttgaa aaagaaaaac cgcctttgcg gggcggtttt tcttaggttc
     1741 taagagtttg cggctctatg aaccaaggta actggctagt tagaggagcg cagtaaccaa
     1801 aatcgttctt tcagtttagc cttaactggc acataacttc aagactaact cctctaaatc
     1861 agttaccagt ggctgctgcc agtggcgctt cgtcgtgtct ttccgggttg gactcaagtt
     1921 gatagttacc ggaaaaggcg cagcagtcgg actgaacggg gggttcgtgc atacagtcca
     1981 gcttggagcg aactgccta
//
