LOCUS       NZ_CP079653             2062 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC24_S468MC plasmid
            pS468M_P8, complete sequence.
ACCESSION   NZ_CP079653
VERSION     NZ_CP079653.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130528
            Assembly: GCF_019317165.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC24_S468MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC24_S468MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 65.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,644
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,380
            CDSs (with protein)               :: 5,380
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 60 of 138
            Pseudo Genes (incomplete)         :: 73 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079653.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC24_S468MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS468M_P8"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            319..510
                     /locus_tag="KW559_RS28055"
                     /old_locus_tag="KW559_28030"
     CDS             319..510
                     /locus_tag="KW559_RS28055"
                     /old_locus_tag="KW559_28030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_071579757.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAGADLCEKLHDDA
                     EHLFRTLSLRLDALQEGD"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            510..908
                     /locus_tag="KW559_RS28060"
                     /old_locus_tag="KW559_28035"
     CDS             510..908
                     /locus_tag="KW559_RS28060"
                     /old_locus_tag="KW559_28035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016162088.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_071579756.1"
                     /translation="MANVSISEAARLTGKSRTTLHRLIKAGELSTCRGERNAKMLDTSE
                     LLRFFGAFAPVSVEQEEEQVSGQRDTVTSDHNEQAIYILKQEIEHLNTLLASKDSHIDS
                     LKQAMLLLENREEKRQNTNRPWWRFWQS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(915..1613)
                     /locus_tag="KW559_RS28065"
                     /old_locus_tag="KW559_28040"
     CDS             complement(915..1613)
                     /locus_tag="KW559_RS28065"
                     /old_locus_tag="KW559_28040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071579755.1"
                     /translation="MTRTFILLCTGVFAIAYALYELKHMGVYYPDASNPQLFTGWKAVT
                     ELGPAILATGIAATAFSLWLFILFFRGSESRRIQSETDRYKQALREAEEAHRARQNTLI
                     QNHNLETAALRSHYSGAEDVLREAFAQKESLLLQAVQNARKEAKQELEEQREALNQRES
                     ILQKKELALETTLEKARKYVAGERHNTVLARLEAEKAEERRRNACATAERRRRKLEKLQ
                     TTDGTAGQKH"
                     /name="hypothetical protein"
     gene            complement(1610..>2062)
                     /locus_tag="KW559_RS28070"
                     /old_locus_tag="KW559_28045"
                     /pseudo=""
     CDS             complement(1610..>2062)
                     /locus_tag="KW559_RS28070"
                     /old_locus_tag="KW559_28045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016947203.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /name="site-specific integrase"
ORIGIN
        1 accgaaaggc aggaacagga gagcgcacga gggagccacc agggggaaac gcctggtatc
       61 tttaaagtcc tgtcgggttt cgccaccgct gatttgagcg tcagatttcg tgatgcttgt
      121 caggggggcg gagcctatgg aaaaacggca acgccgtggc cttttccaca ggctcttctc
      181 ctcctggtga tagcgatgac tcttctgtgt gtcccgtccg ctcgccgcag ccgaacggca
      241 ggagcgtagc gactgagtga gcgaggaagc ggaaaagaga ccggttttac actgagcact
      301 gacgccctga ggccccttat gacgaaacaa cagaaaactg ccctgaacat ggctaaattc
      361 atccagaatc agtccctgct cctgctggag aagcttaacg agcttgatct cgatgcgggg
      421 gctgaccttt gtgagaaact ccacgatgat gcggagcatc ttttccgtac actgtccctc
      481 cgactggatg cactacagga gggtgactga tggcgaacgt gtcgatcagt gaggcagcac
      541 gcctgacggg taagagcagg acaaccctgc acaggttaat taaagccggt gaactgtcca
      601 cctgtcgggg tgaacggaat gcgaaaatgc tcgatacttc agagcttttg cggttttttg
      661 gtgcctttgc gcccgtatcc gttgaacagg aggaagaaca ggtcagtgga cagcgtgaca
      721 cagtcacttc tgaccataat gaacaggcca tttacattct gaaacaggaa attgaacacc
      781 tgaacaccct tcttgcctca aaagattcac atatcgacag cctgaaacag gcgatgttgt
      841 tgctggagaa ccgggaagag aagcggcaga acacgaaccg cccctggtgg cgtttctggc
      901 agtcctgaaa tgcctcagtg tttttgccct gctgttccgt cagtggtctg gagtttttcc
      961 agtttccgtc tgcgccgttc cgccgtcgcg caggcatttc tccgtctttc ctctgctttc
     1021 tctgcttcca gacgggccag cacggtgtta tgccgctccc cggccacata tttccgggcc
     1081 ttctccaggg ttgtttccag cgccagctcc tttttctgca ggatggattc gcgctgattc
     1141 agtgcctccc tctgttcttc cagctcctgc ttggcttctt tccgggcatt ctgcaccgcc
     1201 tgaagcaaga ggctttcttt ttgtgcaaac gcttcccgca gtacatcctc agcaccactg
     1261 tagtggcttc gcagggccgc tgtctccagg ttgtgattct gaataagggt attttgtctg
     1321 gctctgtgag cctcttctgc ctccctcaga gcctgcttat acctgtctgt ctcgctctgt
     1381 atccggcggg actctgagcc tctgaaaaac aaaatgaaca gccacagcga gaacgctgtg
     1441 gctgcgatcc ccgtagccag gattgcggga ccgagttcgg tgaccgcctt ccagccagtg
     1501 aacagctgcg gattgctggc atccggatag taaacgccca tatgtttcag ctcatacagg
     1561 gcgtacgcga tggcgaaaac accggtacac aataaaataa acgttcttgt catcgcaggt
     1621 atgtctccgt gatttccgga cgaaaatggc ccatttcctg gctcacggta cgcagggcca
     1681 tatcacgaac cagaccgagt ttttgcagct cctgcatccg ttgctgggcg tagctgtgac
     1741 gcacgccgtg tgccccccgt gaccagccca gggtacgcat ggaggcggca ctgaaggcgt
     1801 ttgaccagcg ctggcctccg ccaatggcgt actgactctg gtaaaacacg ccgcgatcgg
     1861 tcacccggac cgggctggcc agcctgacat gctcgagacg ttcagccagg cgtgacggca
     1921 gcagaacttc cctgaccagg ccgcctttgc cctgaacggt gtaaatcaca ccctcccgac
     1981 cggcaaattt actgtccgct gccggacggg gatccggtgc acgctcctgg tggggcgcga
     2041 gggtcagcag ttcatgggcg cg
//
