LOCUS       NZ_CP079652             3236 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC24_S468MC plasmid
            pS468M_P7, complete sequence.
ACCESSION   NZ_CP079652
VERSION     NZ_CP079652.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130528
            Assembly: GCF_019317165.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC24_S468MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC24_S468MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 65.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,644
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,380
            CDSs (with protein)               :: 5,380
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 60 of 138
            Pseudo Genes (incomplete)         :: 73 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079652.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC24_S468MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS468M_P7"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            143..3160
                     /locus_tag="KW559_RS28050"
                     /old_locus_tag="KW559_28025"
     CDS             143..3160
                     /locus_tag="KW559_RS28050"
                     /old_locus_tag="KW559_28025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490160.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element IS3000 family transposase"
                     /protein_id="WP_021740570.1"
                     /translation="MAFEERVQILSEAEQDELYGPPAFTSADQRFFFSLNDKELAIAKS
                     LRHRGQRYMLVVLLGYFKAKPVVLNPGFHQIKQDLKYVYQTVLPGPGCRPFNLTPKENE
                     RIYQRVFQLCNYQRWNVKDHGAALRDYLSQQARAWTAPRHLFDAAIEYCSGQKIAIPAY
                     STLQKIISQVVGDEQEHMAAHLERAMSRGLKQALAELVNGTGPLPFRQLRQSARNFTGT
                     ELEKELIVYRHIQHWMPEVDLLLSTLSLSQKNLQHLAEKVDYYGAKLKRQTVGSQWLYL
                     LCYLQTRWQQALERIADGFVHHVRQTKQKAKDYAQEAVFKDWQKAAKNVSKAAEVLHLF
                     IDDSIDLQLPFATVRQQALSLLTKRDLESVCLFLNEQRRSVDEAMWQYCDEKESLRKGL
                     LRELFLCLRFEGCDGTQHLAAALAKTQNELNGQDAQLQTADTRLLSKKSREFLLDGEGN
                     ILIDRYEWFLYQQIPDRLNGQLTLPDITKYRALDADLIDGEHWRKNKYTLLQQSHFTKL
                     AEEPEKLIKQMAMELDTRLYEVGEYLEQEDNRNIILRNPQGKRFWRLPSASKHHLVNNP
                     FFQQIPTTGIADVLRMVDRDTGFIDCFAHVLGSQSRSRSHEYDLLAILVGNATNQGIYG
                     MAQISDRTYDQLSTIQANYLRLETLNAANDNINNATAKLPIFRYYNIQEDVIHASADGQ
                     KFEARRETFKTRYSSKYFGTQKGVSAMTLIANHAAINARVIGANEHESHYIFDLLMSNT
                     SDIIPDVLSTDTHGVNHVNFALLDLFGYQFAPRYAQVGKVINDMFDVKEDKEHRIQLCL
                     KKPINTHRIAQHWDTIQRIAVSLKQRKTTQATLVRKLSEYKRNHPLLEALTEYNRLVKA
                     NYLLCYIDDASLRNYVQRALNRGEAYHQLRRAVSSVNGDQFRGSSDEEIQLWNECARLV
                     TNAIVYFNSRILSQLLTSFEYQGDTKRIDIVKQASPVAWHNINLKGTYHFELSEKLPDL
                     EELMRSIEGYLPVSEK"
                     /name="Tn3-like element IS3000 family transposase"
ORIGIN
        1 ggggttctag ggattttccg tccaaaaacg acaaagtgct ctggaggccc cgccgtctgt
       61 ggcctccaga ggggtattac ttttttcgag atccctattt gggctctgtt tgagtaagat
      121 ttagtctttt tgggctaaat ccatggcatt cgaagaacgt gtccaaatct tgtccgaggc
      181 agaacaagat gagttatatg gaccccccgc tttcacctcc gccgaccaac gcttcttttt
      241 ctcgctgaac gataaggaac tggcgatcgc taaaagcctc cgtcatcggg gccagcgtta
      301 catgctggtg gtactgctgg gctatttcaa agccaagccg gtggtgctga atcccggctt
      361 tcatcagatc aagcaggacc tcaaatacgt ttatcaaacc gttctaccag gcccaggctg
      421 tagacccttt aatctcacgc caaaagagaa cgaacggatt taccaacgtg ttttccagct
      481 ctgcaactac cagcgctgga atgtcaaaga ccatggagcg gcgttgagag attacttatc
      541 ccagcaagcc agagcctgga cagcgcctag gcacctcttc gatgcggcca ttgaatattg
      601 ttcggggcag aagatcgcaa tccctgccta cagcacgctg caaaagatca tcagtcaggt
      661 ggtgggagac gaacaggaac acatggccgc gcaccttgag cgtgcaatgt cacgcggtct
      721 taagcaagca ctggcggagc tcgtgaacgg cacaggtcca ctgccgttcc gacagttgcg
      781 acaatcggct cgtaacttca ccggaaccga gttggagaaa gaactgattg tctatcgcca
      841 tatccagcat tggatgccgg aagtggatct gctgttgagc acgctatcac tgtcgcagaa
      901 aaatctgcaa cacctggcag agaaagtcga ctactacggt gccaaactga aacgtcaaac
      961 cgtaggcagc caatggctgt atttattgtg ctatcttcaa acgcgatggc agcaagcgct
     1021 ggaacgtatt gccgatggct ttgtgcatca tgtcagacag accaaacaga aggcaaagga
     1081 ttatgcgcag gaagcggtgt ttaaggattg gcaaaaagca gctaaaaatg tcagcaaggc
     1141 agctgaagta ctgcacctgt tcattgatga cagcattgat ctgcaactac cgtttgcaac
     1201 agtaagacag caagcactga gcctgctgac caaaagggat ctggaatctg tatgtctctt
     1261 cctgaacgag cagcgacgat cggtcgatga agccatgtgg cagtactgcg acgagaaaga
     1321 aagtctgcgg aaaggtttgc tgcgagagtt gttcctatgt ctgcgcttcg aaggctgcga
     1381 cggcacccag cacttagcgg ccgccttggc gaaaacacaa aacgaactca acggccagga
     1441 cgctcagttg caaactgccg acaccagact cctttccaaa aaatcacgtg aattcctgct
     1501 ggatggtgaa gggaatatcc tgatcgatcg ttatgagtgg ttcctctatc aacagattcc
     1561 tgatcgcctg aatggccagc tgacgctgcc tgatatcact aaataccggg cactcgacgc
     1621 cgacctgatc gacggggaac attggcgaaa aaacaaatat acgctgcttc aacagagcca
     1681 ttttacaaaa ttagcggagg agcctgaaaa gctgatcaaa cagatggcca tggaattgga
     1741 tacccgtttg tacgaagtcg gcgaatatct tgaacaggaa gacaaccgga atatcatctt
     1801 gcgtaatccg cagggtaaac gcttctggcg cctgccttcg gccagcaaac atcatctggt
     1861 caacaatccc ttcttccagc aaattcccac aacggggatt gcggatgtac tgcgcatggt
     1921 tgatcgtgac accggtttca ttgactgctt cgctcatgtg ctgggttccc aatccagaag
     1981 ccgttcccat gaatatgacc tgttggcaat tctggtcggc aatgcaacca atcaaggcat
     2041 ttacggcatg gcacagatct ctgatcgtac ctatgatcag ctcagcacta tccaggcgaa
     2101 ctatcttcgc ctggaaacat tgaatgctgc taacgacaac atcaataacg cgacagccaa
     2161 gctacccatc ttccggtact acaacatcca ggaagatgtg atccacgcca gtgccgatgg
     2221 tcaaaagttc gaagcccggc gcgagacctt caaaacccgt tattcgtcga agtactttgg
     2281 cactcaaaaa ggtgtttctg ccatgacctt gatcgccaat cacgctgcga tcaacgccag
     2341 agtgatcggc gccaacgaac atgaatcgca ctacatcttt gatttgttga tgagcaatac
     2401 gtcagacatc attccggatg tgctctcaac cgatacccat ggggtgaacc atgtgaactt
     2461 cgcgttactg gatctgttcg gataccagtt tgccccacgc tatgcccagg ttggcaaagt
     2521 gatcaatgac atgtttgatg tcaaggaaga caaagaacac cgaattcagc tgtgcttaaa
     2581 aaagccaatc aatacccatc gtattgcgca gcactgggat accatccaac ggattgcagt
     2641 atcacttaag cagcggaaaa caacgcaagc caccttggtg agaaagctct cggagtacaa
     2701 gcgcaatcac ccgctgctgg aagccctgac ggaatacaat cgcctggtga aagcgaatta
     2761 tctactgtgc tacatcgatg atgccagttt aagaaactat gttcagcgcg cgctgaaccg
     2821 gggagaggcc tatcaccaac tgcgtcgggc cgtgagcagc gtcaatgggg atcagttccg
     2881 gggcagttca gacgaagaaa tccagctatg gaatgagtgc gctcgcctgg tcaccaatgc
     2941 catcgtttac ttcaactcca ggatactcag ccagctgttg accagcttcg aataccaagg
     3001 agataccaag agaatagata tcgtcaaaca ggcatcccct gtggcctggc acaacattaa
     3061 cctcaagggg acttaccact tcgaattgag cgaaaaattg ccagatctgg aggagcttat
     3121 gcgctcaatc gagggatatt tacccgtcag cgaaaagtaa tacccctctg gaggccacgg
     3181 acggcgcggc ctccagagca ctttgtcgtt tttggacgga aaatccctag aacccc
//
