LOCUS       NZ_CP079651             3518 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC24_S468MC plasmid
            pS468M_P6, complete sequence.
ACCESSION   NZ_CP079651
VERSION     NZ_CP079651.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130528
            Assembly: GCF_019317165.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3518)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC24_S468MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3518)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC24_S468MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 65.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:15:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,644
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,380
            CDSs (with protein)               :: 5,380
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 60 of 138
            Pseudo Genes (incomplete)         :: 73 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079651.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC24_S468MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS468M_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            237..641
                     /locus_tag="KW559_RS28030"
                     /old_locus_tag="KW559_28005"
     CDS             237..641
                     /locus_tag="KW559_RS28030"
                     /old_locus_tag="KW559_28005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(735..1166)
                     /locus_tag="KW559_RS28035"
                     /old_locus_tag="KW559_28010"
     CDS             complement(735..1166)
                     /locus_tag="KW559_RS28035"
                     /old_locus_tag="KW559_28010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            1584..1841
                     /locus_tag="KW559_RS28040"
                     /old_locus_tag="KW559_28015"
     CDS             1584..1841
                     /locus_tag="KW559_RS28040"
                     /old_locus_tag="KW559_28015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(1871..2929)
                     /locus_tag="KW559_RS28045"
                     /old_locus_tag="KW559_28020"
     CDS             complement(1871..2929)
                     /locus_tag="KW559_RS28045"
                     /old_locus_tag="KW559_28020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(3259..3425)
                     /locus_tag="KW559_RS28555"
                     /pseudo=""
     CDS             complement(3259..3425)
                     /locus_tag="KW559_RS28555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          complement(3318..3518)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.137"
                     /coverage="86.0"
                     /evalue="7.84e-78"
ORIGIN
        1 tctgaatggc gtgaatattc gcgctatgca cttgcgtgca tactcatgca tgccataaaa
       61 acagagcctg cgcgtttctg gcgggttttc gggtggtttg ttgcctgttt taccggtttc
      121 ccgtcagaaa cgccctcagc gcgtttctga cgatgctgat aacggatgtt atggtaaatt
      181 atccgcttgt ctgaaagctg gctgccgaag caaccaagga aaggagaaca gacctgatga
      241 ccattttagt gacgatacag gcccagctcg ttgtcgggga ggaacaggtt ataaagagcc
      301 tcgctcctga gggcatgctg gccgccgtgt tcgaagacga tggccggacc gggtatttct
      361 atgcgctcga tgagtccgtc gagggaaacc cgattatgga cgcagtacac atctacaatg
      421 ccgaagacgt ttcagacggt cacattcctt ctgatgttaa aattggctgg tcagaagaca
      481 gtcagaagtg cgtactcctg atcaatggat acccgcacgg ggcattcgat ttcgtgggaa
      541 aaaacgggta ctgcaggagt ggttatcctc cccctataaa caaggtgtgg tctctttccg
      601 ggcatgagtg gagcgactct gtggatgatt ttttccggtg aattacggca ggctatagcc
      661 tgccattatg gttcgaaaaa cggatgttat ggtaaattcg tctgtgaagt aggtagacat
      721 ttctaaagct agttttaata gccaagtctc ttcaattcag tcgagaggcg tttgaggctt
      781 acatcaagat tgcttttatt ttgttttaac tcttttttca taaactcagt gtgatgtgct
      841 agctcagggt tatcagttga gcgagtcacg ggaaaatcat cactggatga aagtcgccca
      901 tttttactgt agtccatggt gatacagatc agagttgcaa ggtcgattac ccggtgaaga
      961 ggcagctctt ctgattgtct tgaccatttt tctcctgtgt ttcgccaaac ctttgccgaa
     1021 agctcagtcc atccaggagt gttccattga gcaataccta cagatagccc catagcatca
     1081 gtgtcatcgg catgtgggcc gtcaatgcgg tcgtaatttt cgacttgaat aattggttta
     1141 tgcttcaaat gcgcgggtat tttcatcagt tcgtccttag gtaatgtttg tgattattaa
     1201 attacattgt ttttctaatt ataaaactca ctaaatgtaa gtaaatatta atatctattg
     1261 ttatcatgtg cttgtgattt tgtttttcca attttatgtt ttttgcttgg agagtagcgg
     1321 tgtttttttg tgtcaagtgt tatgataagc cgtacgtttt ttttctggtt tatagttcgg
     1381 ttattcacag caatgggcgt ggttttctat gactacagat aacgttagga atattggcga
     1441 ctataaaaag aaagatgtcg gggtggatgc tgactgtaat ccagtctcag gaaacacacc
     1501 accagtcaga ctaagtgaga aacttagaaa tggaattcct cctggtttga aaactcagat
     1561 gcgccaacaa atgaggaaaa aacatgggct ctaacaataa tcagaataaa gatctgcagg
     1621 ataagcaagc tgatcttttg gaccaaacgt atactcttgg ttggatggat ggctatgccg
     1681 aagggtatga tgatgctatt gaagatactc agaacgcttt gaataaactg gaaaacgaaa
     1741 acgagttgct tactgaggtt gttgaaagta aagataatgt aatcaaagag ttggcctcta
     1801 gtgctggcag ggcgctgcaa gcagtaaaga aaaacaaata aaaaaaggcc cttttaaggg
     1861 ccttgctatt ttattcgatc ataccagcga gagctacaat gttggggact tgtttatcta
     1921 gctgcgtctg attaaccttt attatttttc ctgaaacagt tttatttcct gcagttaatg
     1981 tcgcgattgg aatacctaag gctccagata cgacagatgc tgtgtttgca tcatttactt
     2041 catactgaaa catattcctg aaagatcttt tattatttgg cgttgagctc ccatttgggt
     2101 gaatacaaaa cagacttggt tttgtttgcc atactttcca aatttcatca ccaatttcgg
     2161 ttactaccgt cttaaatgca ctggcagatg aattgttcat ttgcgttaat ctatttccaa
     2221 catacatata tatttgtggt agcgacatag aataacgatt gctattaaga tagaaatctg
     2281 attgtggttc attctgatgg cgacgctcac cataaactaa agaaagtaca gccttaactg
     2341 ctctctttga tgaaccatcg gcagagaaag gaattaaaag gcgctctgct gcggttaaag
     2401 ctaactctgt ataaatagag aagctagggt tgcagtcaat gaatacgcag ctatcttcat
     2461 tattccatga gttgcaaatg tcactgatta aatcattaat ccagaggtga acagtacgcc
     2521 atgcatcatg gggacctgga aatgatgccc caacaactct tgatgcttgg agttctaatt
     2581 gttcatcgcc agtgacaaga tatagattat ttggaacttt actattgtgt gtagatacat
     2641 ttattacata gctagaacca gtgttggtag gaatatatgg acttctgatc ctatcctcaa
     2701 tatatccaga tattgtcttt ctctgtattg ctgaatgaat ctggtttagt gtgttttcgc
     2761 catttatcat tccaccaagt aacatagagg acgagttcgc ttgtgggcac aggtcaacca
     2821 ccaggacctt tttagtaggg ttctgtctgg catattcaga ggctaactga aaagtaaggt
     2881 aacttttccc tacaccaccc ttgttattcc atacggcata gatcgccatc tataactcct
     2941 aatctagttt tgttgttagc ttagattcag ggtactagag attattgttc tactgttagt
     3001 ttctttcagc tgactgcctt tttttggaac gatattcagt cgaaggggtt ggctggctca
     3061 ccatgactta tctggagttg tcgaattccg attaaaagga tcttcttgag atcctaacct
     3121 gcgggatgta atcttttgct ctgtaaacga aaaaaccacc tggggaggtg gtttttcgaa
     3181 ggatcagtaa gttggggaac ttctgaaccg tggtaacagg gtgtacaaga ccgctgccac
     3241 caaatctgtc ctttcagttt agctgtagtt aggctgtaac ttcaagaact ctgcaccagt
     3301 aattcttgta caccccttac cagtggctgc tgccagtggc gttttgtcgt gccttccggg
     3361 ttggactcaa gtcgaaagtt accggaacag gcgcagcagt cggactgaac ggggggttcg
     3421 tgcatacagt ccagcttgga gcgaactgcc tacccggaac tgagtgtcag gcgtggaatg
     3481 agacaaacgc ggccataaca gcggaatgac accggtaa
//
