LOCUS       NZ_CP079641             4890 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC21_AI1646PC
            plasmid pAI1646P_P5, complete sequence.
ACCESSION   NZ_CP079641
VERSION     NZ_CP079641.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130521
            Assembly: GCF_019317125.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4890)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC21_AI1646PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4890)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC21_AI1646PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 58.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:04:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,587
            CDSs (total)                      :: 5,461
            Genes (coding)                    :: 5,315
            CDSs (with protein)               :: 5,315
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 65 of 146
            Pseudo Genes (incomplete)         :: 82 of 146
            Pseudo Genes (internal stop)      :: 22 of 146
            Pseudo Genes (multiple problems)  :: 20 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079641.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4890
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC21_AI1646PC"
                     /isolation_source="Laryngeal suction"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1646P_P5"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            300..466
                     /locus_tag="KW557_RS28285"
                     /pseudo=""
     CDS             300..466
                     /locus_tag="KW557_RS28285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            796..1854
                     /locus_tag="KW557_RS27825"
                     /old_locus_tag="KW557_27790"
     CDS             796..1854
                     /locus_tag="KW557_RS27825"
                     /old_locus_tag="KW557_27790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(1884..2141)
                     /locus_tag="KW557_RS27830"
                     /old_locus_tag="KW557_27795"
     CDS             complement(1884..2141)
                     /locus_tag="KW557_RS27830"
                     /old_locus_tag="KW557_27795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            2559..2990
                     /locus_tag="KW557_RS27835"
                     /old_locus_tag="KW557_27800"
     CDS             2559..2990
                     /locus_tag="KW557_RS27835"
                     /old_locus_tag="KW557_27800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            complement(3084..3488)
                     /locus_tag="KW557_RS27840"
                     /old_locus_tag="KW557_27805"
     CDS             complement(3084..3488)
                     /locus_tag="KW557_RS27840"
                     /old_locus_tag="KW557_27805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(4283..4684)
                     /locus_tag="KW557_RS27845"
                     /old_locus_tag="KW557_27810"
     CDS             complement(4283..4684)
                     /locus_tag="KW557_RS27845"
                     /old_locus_tag="KW557_27810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(4684..4875)
                     /locus_tag="KW557_RS27850"
                     /old_locus_tag="KW557_27815"
     CDS             complement(4684..4875)
                     /locus_tag="KW557_RS27850"
                     /old_locus_tag="KW557_27815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          6..408
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 gaaagctcga gaaaaccgag cgatcacgta atttagaaaa gggaaggccg cacagcggcc
       61 gtttttccat aggctccgcc cccctgacaa gcatcacaga aacggacgct caaatcagtg
      121 gtggcgaaac ccgacaggac tataaagata tcaggcgttt ccccctgatg gctccctcgt
      181 gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt
      241 gtctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta
      301 tgcacgaacc ccccgttcag tccgactgct gcgcctgttc cggtaacttt cgacttgagt
      361 ccaacccgga aggcacgaca aaacgccact ggcagcagcc actggtaagg ggtgtacaag
      421 aattactggt gcagagttct tgaagttaca gcctaactac agctaaactg aaaggacaga
      481 tttggtggca gcggtcttgt acaccctgtt accacggttc agaagttccc caacttactg
      541 atccttcgaa aaaccacctc cccaggtggt tttttcgttt acagagcaaa agattacatc
      601 ccgcaggtta ggatctcaag aagatccttt taatcggaat tcgacaactc cagataagtc
      661 atggtgagcc agccaacccc ttcgactgaa tatcgttcca aaaaaaggca gtcagctgaa
      721 agaaactaac agtagaacaa taatctctag taccctgaat ctaagctaac aacaaaacta
      781 gattaggagt tatagatggc gatctatgcc gtatggaata acaagggtgg tgtagggaaa
      841 agttacctta cttttcagtt agcctctgaa tatgccagac agaaccctac taaaaaggtc
      901 ctggtggttg acctgtgccc acaagcgaac tcgtcctcta tgttacttgg tggaatgata
      961 aatggcgaaa acacactaaa ccagattcat tcagcaatac agagaaagac aatatctgga
     1021 tatattgagg ataggatcag aagtccatat attcctacca acactggttc tagctatgta
     1081 ataaatgtat ctacacacaa tagtaaagtt ccaaataatc tatatcttgt cactggcgat
     1141 gaacaattag aactccaagc atcaagagtt gttggggcat catttccagg tccccatgat
     1201 gcatggcgta ctgttcacct ctggattaat gatttaatca gtgacatttg caactcatgg
     1261 aataatgaag atagctgcgt attcattgac tgcaacccta gcttctctat ttatacagag
     1321 ttagctttaa ccgcagcaga gcgcctttta attcctttct ctgccgatgg ttcatcaaag
     1381 agagcagtta aggctgtact ttctttagtt tatggtgagc gtcgccatca gaatgaacca
     1441 caatcagatt tctatcttaa tagcaatcgt tattctatgt cgctaccaca aatatatatg
     1501 tatgttggaa atagattaac gcaaatgaac aattcatctg ccagtgcatt taagacggta
     1561 gtaaccgaaa ttggtgatga aatttggaaa gtatggcaaa caaaaccaag tctgttttgt
     1621 attcacccaa atgggagctc aacgccaaat aataaaagat ctttcaggaa tatgtttcag
     1681 tatgaagtaa atgatgcaaa cacagcatct gtcgtatctg gagccttagg tattccaatc
     1741 gcgacattaa ctgcaggaaa taaaactgtt tcaggaaaaa taataaaggt taatcagacg
     1801 cagctagata aacaagtccc caacattgta gctctcgctg gtatgatcga ataaaatagc
     1861 aaggccctta aaagggcctt tttttatttg tttttcttta ctgcttgcag cgccctgcca
     1921 gcactagagg ccaactcttt gattacatta tctttacttt caacaacctc agtaagcaac
     1981 tcgttttcgt tttccagttt attcaaagcg ttctgagtat cttcaatagc atcatcatac
     2041 ccttcggcat agccatccat ccaaccaaga gtatacgttt ggtccaaaag atcagcttgc
     2101 ttatcctgca gatctttatt ctgattattg ttagagccca tgttttttcc tcatttgttg
     2161 gcgcatctga gttttcaaac caggaggaat tccatttcta agtttctcac ttagtctgac
     2221 tggtggtgtg tttcctgaga ctggattaca gtcagcatcc accccgacat ctttcttttt
     2281 atagtcgcca atattcctaa cgttatctgt agtcatagaa aaccacgccc attgctgtga
     2341 ataaccgaac tataaaccag aaaaaaaacg tacggcttat cataacactt gacacaaaaa
     2401 aacaccgcta ctctccaagc aaaaaacata aaattggaaa aacaaaatca caagcacatg
     2461 ataacaatag atattaatat ttacttacat ttagtgagtt ttataattag aaaaacaatg
     2521 taatttaata atcacaaaca ttacctaagg acgaactgat gaaaataccc gcgcatttga
     2581 agcataaacc aattattcaa gtcgaaaatt acgaccgcat tgacggccca catgccgatg
     2641 acactgatgc tatggggcta tctgtaggta ttgctcaatg gaacactcct ggatggactg
     2701 agctttcggc aaaggtttgg cgaaacacag gagaaaaatg gtcaagacaa tcagaagagc
     2761 tgcctcttca ccgggtaatc gaccttgcaa ctctgatctg tatcaccatg gactacagta
     2821 aaaatgggcg actttcatcc agtgatgatt ttcccgtgac tcgctcaact gataaccctg
     2881 agctagcaca tcacactgag tttatgaaaa aagagttaaa acaaaataaa agcaatcttg
     2941 atgtaagcct caaacgcctc tcgactgaat tgaagagact tggctattaa aactagcttt
     3001 agaaatgtct acctacttca cagacgaatt taccataaca tccgtttttc gaaccataat
     3061 ggcaggctat agcctgccgt aattcaccgg aaaaaatcat ccacagagtc gctccactca
     3121 tgcccggaaa gagaccacac cttgtttata gggggaggat aaccactcct gcagtacccg
     3181 ttttttccca cgaaatcgaa tgccccgtgc gggtatccat tgatcaggag tacgcacttc
     3241 tgactgtctt ctgaccagcc aattttaaca tcagaaggaa tgtgaccgtc tgaaacgtct
     3301 tcggcattgt agatgtgtac tgcgtccata atcgggtttc cctcgacgga ctcatcgagc
     3361 gcatagaaat acccggtccg gccatcgtct tcgaacacgg cggccagcat gccctcagga
     3421 gcgaggctct ttataacctg ttcctccccg acaacgagct gggcctgtat cgtcactaaa
     3481 atggtcatca ggtctgttct cctttccttg gttgcttcgg cagccagctt tcagacaagc
     3541 ggataattta ccataacatc cgttatcagc atcgtcagaa acgcgctgag ggcgtttctg
     3601 acgggaaacc ggtaaaacag gcaacaaacc acccgaaaac ccgccagaaa cgcgcaggct
     3661 ctgtttttat ggcatgcatg agtatgcacg caagtgcata gcgcgaatat tcacgccatt
     3721 cagacagggt aagtcctgtt tccggcgttc ttcccatccg aaaacggtga acggggacgc
     3781 aatttattgc gtggccgtga agcgttgccg gcgcagccgg aaaaccggtt ttcagcacgt
     3841 tcaggaatcg ggttcgtcga cggccggcaa tcacgttatg gcaagtcgcc ggacgactca
     3901 ccacacgatt caccggcgac tctgcactag agtcgtacct agagtcgccg cgactaaaaa
     3961 acaaccaaac ggggagtcgg gtctagagtc gggtcgttat taactcattg tttttatagc
     4021 cctgagtcgt taccgactct atgacgactc gccggggact ctatgacgag tcgtcataga
     4081 gtcggatcta tataaataaa atttaaaaaa cgaaatctca ggaaagtaaa ctactgatat
     4141 taaatacaaa tctgcaaaat tttaattttg cgtggggtgt gggtattttt agtggtgagg
     4201 agcgttcaga gatctgacta tttttgggaa ggttcaggaa ctccccggga tggccggaga
     4261 ggaaaactga agcatgacag ggtcaggatt ttttccagaa tttccaccat ggcgccgggg
     4321 attcagttaa ttttgcctgg tgattttcaa gaaggagcat ggcctgtttc aggctgtcaa
     4381 tgtgcgaatc tttggacaaa agtaaagtgt tcaggtgttc aatctcctgt ttcagatgac
     4441 gaatcacctg ttcacactgg tcaacagagg ctgtatcgcg ctgttcagag acctgtccag
     4501 aatggtgttc acccttcagt tgttcaaagg gaccaaagac acgtaaaagc tctgaagtat
     4561 ctaccatttt tgcattgcgc tcaccgctac aggtggacag gtcacctgct ttaattaacc
     4621 tgtgcagtgt tgttctactc ttacccgtca gtcgggctgc ctcactaata gacactctgg
     4681 ccatcagtta ccatcctgta atgcatccag tctcgaggac agtgtacgga aaagatgctc
     4741 cgcatcatcg tggagtttct cacaaaggtc ggcctcgaca tcaagatcaa gctcgttaag
     4801 cttctccagc aggagcagag attgatgctg gatgaattta gccatgttca gcgctgtttt
     4861 ctgttgtttc gtcataagag gcctcagagc
//
