LOCUS       NZ_CP079623             4991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC16_AI1547MC
            plasmid pAI1547M_P6, complete sequence.
ACCESSION   NZ_CP079623
VERSION     NZ_CP079623.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130505
            Assembly: GCF_019317065.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC16_AI1547MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC16_AI1547MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:00:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,821
            CDSs (total)                      :: 5,694
            Genes (coding)                    :: 5,540
            CDSs (with protein)               :: 5,540
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 63 of 154
            Pseudo Genes (incomplete)         :: 87 of 154
            Pseudo Genes (internal stop)      :: 26 of 154
            Pseudo Genes (multiple problems)  :: 19 of 154
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079623.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC16_AI1547MC"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547M_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            564..755
                     /locus_tag="KW551_RS28940"
                     /old_locus_tag="KW551_28915"
     CDS             564..755
                     /locus_tag="KW551_RS28940"
                     /old_locus_tag="KW551_28915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            755..1156
                     /locus_tag="KW551_RS28945"
                     /old_locus_tag="KW551_28920"
     CDS             755..1156
                     /locus_tag="KW551_RS28945"
                     /old_locus_tag="KW551_28920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            1951..2355
                     /locus_tag="KW551_RS28950"
                     /old_locus_tag="KW551_28925"
     CDS             1951..2355
                     /locus_tag="KW551_RS28950"
                     /old_locus_tag="KW551_28925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(2449..2880)
                     /locus_tag="KW551_RS28955"
                     /old_locus_tag="KW551_28930"
     CDS             complement(2449..2880)
                     /locus_tag="KW551_RS28955"
                     /old_locus_tag="KW551_28930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            3298..3555
                     /locus_tag="KW551_RS28960"
                     /old_locus_tag="KW551_28935"
     CDS             3298..3555
                     /locus_tag="KW551_RS28960"
                     /old_locus_tag="KW551_28935"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(3585..4643)
                     /locus_tag="KW551_RS28965"
                     /old_locus_tag="KW551_28940"
     CDS             complement(3585..4643)
                     /locus_tag="KW551_RS28965"
                     /old_locus_tag="KW551_28940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     Typing          complement(41..443)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.857"
                     /coverage="99.0"
                     /evalue="1.65e-171"
ORIGIN
        1 aacttcaaga actctgcacc agtaattctt gtacacccct taccagtggc tgctgccagt
       61 ggcgttttgt cgtgccttcc gggttggact caagtcgaaa gttaccggaa caggcgcagc
      121 agtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg
      181 aactgagtgt caggcgtgga atgagacaaa cgcggccata acagcggaat gacaccggta
      241 aaccgaaagg caggaacagg agagcgcacg agggagccac cagggggaaa cgcctggtat
      301 ctttatagtc ctgtcgggtt tcgccaccac tgatttgagc gtcagatttc gtgatgcttg
      361 tcaggggggc ggagcctatg gaaaaacggc cgctgtgcgg cctctccttc tccccatcac
      421 gcgatcgctc ggttttctcg agcttttata cgcatgctcc tgccgctcgc cgcagccgaa
      481 cggcaggagc gtagcgactg agtgagcgag gaagcggaaa agagaacatc cctacactga
      541 gcactgacgc tctgaggcct cttatgacga aacaacagaa aacagcgctg aacatggcta
      601 aattcatcca gcatcaatct ctgctcctgc tggagaagct taacgagctt gatcttgatg
      661 tcgaggccga cctttgtgag aaactccacg atgatgcgga gcatcttttc cgtacactgt
      721 cctcgagact ggatgcatta caggatggta actgatggcc agagtgtcta ttagtgaggc
      781 agcccgactg acgggtaaga gtagaacaac actgcacagg ttaattaaag caggtgacct
      841 gtccacctgt agcggtgagc gcaatgcaaa aatggtagat acttcagagc ttttacgtgt
      901 ctttggtccc tttgaacaac tgaagggtga acaccattct ggacaggtct ctgaacagcg
      961 cgatacagcc tctgttgacc agtgtgaaca ggtgattcgt catctgaaac aggagattga
     1021 acacctgaac actttacttt tgtccaaaga ttcgcacatt gacagcctga aacaggccat
     1081 gctccttctt gaaaatcacc aggcaaaatt aactgaatcc ccggcgccat ggtggaaatt
     1141 ctggaaaaaa tcctgaccct gtcatgcttc agttttcctc tccggccatc ccggggagtt
     1201 cctgaacctt cccaaaaata gtcagatctc tgaacgctcc tcaccactaa aaatacccac
     1261 accccacgca aaattaaaat tttgcagatt tgtatttaat atcagtagtt tactttcctg
     1321 agatttcgtt ttttaaattt tatttatata gatccgactc tatgacgact cgtcatagag
     1381 tccccggcga gtcgtcatag agtcggtaac gactcagggc tataaaaaca atgagttaat
     1441 aacgacccga ctctagaccc gactccccgt ttggttgttt tttagtcgcg gcgactctag
     1501 gtacgactct agtgcagagt cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca
     1561 taacgtgatt gccggccgtc gacgaacccg attcctgaac gtgctgaaaa ccggttttcc
     1621 ggctgcgccg gcaacgcttc acggccacgc aataaattgc gtccccgttc accgttttcg
     1681 gatgggaaga acgccggaaa caggacttac cctgtctgaa tggcgtgaat attcgcgcta
     1741 tgcacttgcg tgcatactca tgcatgccat aaaaacagag cctgcgcgtt tctggcgggt
     1801 tttcgggtgg tttgttgcct gttttaccgg tttcccgtca gaaacgccct cagcgcgttt
     1861 ctgacgatgc tgataacgga tgttatggta aattatccgc ttgtctgaaa gctggctgcc
     1921 gaagcaacca aggaaaggag aacagacctg atgaccattt tagtgacgat acaggcccag
     1981 ctcgttgtcg gggaggaaca ggttataaag agcctcgctc ctgagggcat gctggccgcc
     2041 gtgttcgaag acgatggccg gaccgggtat ttctatgcgc tcgatgagtc cgtcgaggga
     2101 aacccgatta tggacgcagt acacatctac aatgccgaag acgtttcaga cggtcacatt
     2161 ccttctgatg ttaaaattgg ctggtcagaa gacagtcaga agtgcgtact cctgatcaat
     2221 ggatacccgc acggggcatt cgatttcgtg ggaaaaaacg ggtactgcag gagtggttat
     2281 cctcccccta taaacaaggt gtggtctctt tccgggcatg agtggagcga ctctgtggat
     2341 gattttttcc ggtgaattac ggcaggctat agcctgccat tatggttcga aaaacggatg
     2401 ttatggtaaa ttcgtctgtg aagtaggtag acatttctaa agctagtttt aatagccaag
     2461 tctcttcaat tcagtcgaga ggcgtttgag gcttacatca agattgcttt tattttgttt
     2521 taactctttt ttcataaact cagtgtgatg tgctagctca gggttatcag ttgagcgagt
     2581 cacgggaaaa tcatcactgg atgaaagtcg cccattttta ctgtagtcca tggtgataca
     2641 gatcagagtt gcaaggtcga ttacccggtg aagaggcagc tcttctgatt gtcttgacca
     2701 tttttctcct gtgtttcgcc aaacctttgc cgaaagctca gtccatccag gagtgttcca
     2761 ttgagcaata cctacagata gccccatagc atcagtgtca tcggcatgtg ggccgtcaat
     2821 gcggtcgtaa ttttcgactt gaataattgg tttatgcttc aaatgcgcgg gtattttcat
     2881 cagttcgtcc ttaggtaatg tttgtgatta ttaaattaca ttgtttttct aattataaaa
     2941 ctcactaaat gtaagtaaat attaatatct attgttatca tgtgcttgtg attttgtttt
     3001 tccaatttta tgttttttgc ttggagagta gcggtgtttt tttgtgtcaa gtgttatgat
     3061 aagccgtacg ttttttttct ggtttatagt tcggttattc acagcaatgg gcgtggtttt
     3121 ctatgactac agataacgtt aggaatattg gcgactataa aaagaaagat gtcggggtgg
     3181 atgctgactg taatccagtc tcaggaaaca caccaccagt cagactaagt gagaaactta
     3241 gaaatggaat tcctcctggt ttgaaaactc agatgcgcca acaaatgagg aaaaaacatg
     3301 ggctctaaca ataatcagaa taaagatctg caggataagc aagctgatct tttggaccaa
     3361 acgtatactc ttggttggat ggatggctat gccgaagggt atgatgatgc tattgaagat
     3421 actcagaacg ctttgaataa actggaaaac gaaaacgagt tgcttactga ggttgttgaa
     3481 agtaaagata atgtaatcaa agagttggcc tctagtgctg gcagggcgct gcaagcagta
     3541 aagaaaaaca aataaaaaaa ggccctttta agggccttgc tattttattc gatcatacca
     3601 gcgagagcta caatgttggg gacttgttta tctagctgcg tctgattaac ctttattatt
     3661 tttcctgaaa cagttttatt tcctgcagtt aatgtcgcga ttggaatacc taaggctcca
     3721 gatacgacag atgctgtgtt tgcatcattt acttcatact gaaacatatt cctgaaagat
     3781 cttttattat ttggcgttga gctcccattt gggtgaatac aaaacagact tggttttgtt
     3841 tgccatactt tccaaatttc atcaccaatt tcggttacta ccgtcttaaa tgcactggca
     3901 gatgaattgt tcatttgcgt taatctattt ccaacataca tatatatttg tggtagcgac
     3961 atagaataac gattgctatt aagatagaaa tctgattgtg gttcattctg atggcgacgc
     4021 tcaccataaa ctaaagaaag tacagcctta actgctctct ttgatgaacc atcggcagag
     4081 aaaggaatta aaaggcgctc tgctgcggtt aaagctaact ctgtataaat agagaagcta
     4141 gggttgcagt caatgaatac gcagctatct tcattattcc atgagttgca aatgtcactg
     4201 attaaatcat taatccagag gtgaacagta cgccatgcat catggggacc tggaaatgat
     4261 gccccaacaa ctcttgatgc ttggagttct aattgttcat cgccagtgac aagatataga
     4321 ttatttggaa ctttactatt gtgtgtagat acatttatta catagctaga accagtgttg
     4381 gtaggaatat atggacttct gatcctatcc tcaatatatc cagatattgt ctttctctgt
     4441 attgctgaat gaatctggtt tagtgtgttt tcgccattta tcattccacc aagtaacata
     4501 gaggacgagt tcgcttgtgg gcacaggtca accaccagga cctttttagt agggttctgt
     4561 ctggcatatt cagaggctaa ctgaaaagta aggtaacttt tccctacacc acccttgtta
     4621 ttccatacgg catagatcgc catctataac tcctaatcta gttttgttgt tagcttagat
     4681 tcagggtact agagattatt gttctactgt tagtttcttt cagctgactg cctttttttg
     4741 gaacgatatt cagtcgaagg ggttggctgg ctcaccatga cttatctgga gttgtcgaat
     4801 tccgattaaa aggatcttct tgagatccta acctgcggga tgtaatcttt tgctctgtaa
     4861 acgaaaaaac cacctgggga ggtggttttt cgaaggatca gtaagttggg gaacttctga
     4921 accgtggtaa cagggtgtac aagaccgctg ccaccaaatc tgtcctttca gtttagctgt
     4981 agttaggctg t
//
