LOCUS       NZ_CP079616             2101 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC15_AI1547PC
            plasmid pAI1547P_P10, complete sequence.
ACCESSION   NZ_CP079616
VERSION     NZ_CP079616.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130504
            Assembly: GCF_019317025.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC15_AI1547PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC15_AI1547PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:02:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,494
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,219
            CDSs (with protein)               :: 5,219
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 66 of 151
            Pseudo Genes (incomplete)         :: 85 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 20 of 151
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079616.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC15_AI1547PC"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547P_P10"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            join(1731..2101,1..595)
                     /locus_tag="KW550_RS27375"
                     /old_locus_tag="KW550_27350"
     CDS             join(1731..2101,1..595)
                     /locus_tag="KW550_RS27375"
                     /old_locus_tag="KW550_27350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            599..865
                     /locus_tag="KW550_RS27380"
                     /old_locus_tag="KW550_27355"
     CDS             599..865
                     /locus_tag="KW550_RS27380"
                     /old_locus_tag="KW550_27355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          24..255
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 acttggaaca gtccttacag caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga
       61 gctatcacct gttcaggggt ggatcagggc tacggaggtg acgcgaggta aggatggcag
      121 cgcacatccg cattttcact gtctgctgat ggtgcaacct tcttggttta aagggaagaa
      181 ctacgttaag cacgaacgtt gggtagaact ctggcgcgat tgcttgcggg tgaactatga
      241 gccgaatatc gatattcggg cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc
      301 cgagcaactg caaagcgcgg ttgctgaaac gctgaaatac tccgttaaac cggaagatat
      361 ggcaaacgat cctgagtggt ttcttgagct gacgcggcag cttcacaagc gccgttttat
      421 ctcgaccggt ggggcgctaa aaaacgtcct ccagttggat cgagaaacca atgaggatct
      481 tgtcattgcc gacgatgtag gggatggcac tgatgacggg aagcggacgg cgtttgtctg
      541 ggattcaggt aaacggcgtt acaaacgcgc ccctgagaag gataaatcgg attaacgtat
      601 gaatattaat attgaatacc tgaatggaaa taagactatt ggtttatttt ttttaagaag
      661 tgaagcggtg attcctgaca ggtttaaaaa ccttattttg cttattgatg gattaagttt
      721 tggcacattt ggttttcatc cgcacgaagg ttttgaggat gaattaattt tatatattca
      781 gaaaacaaac gagagggtaa aaactctttt tgtgaaaata gatttaaacg gtatcaagtt
      841 tggattttta agaacgcatt cttagttctg gaaaagagcc agcggcaggc tgaggtgata
      901 ggtacgagat tgcatgcaat ctctagtgct ctgtctatcc tgcattatcc tcagcattat
      961 cctcagcatt atcctcagcc ttgccaactc gacaccaatg caggatagac aatccgatgt
     1021 caaatgttaa cactctgcga gtggtacatt ttccccggat tatcgtcctg agcctgccgc
     1081 tggctctctt tctaccgcct cgctttgctc gttgctcaac gcctcacaga cacggattaa
     1141 aatccgcatc cgttcaccgt tttttaaagt ccgttaaaag catgatgcca tctccgagag
     1201 ttaatctcgt caaatgctaa atcgtggggg tcccctttgg ggttccgatt tagtgattga
     1261 cgacaccacc gattaaaaaa cttatgcggg gtggatggtt tcacgaagtg aggccatcca
     1321 cctgtaagac agggttttgt ttttattccc tgttttggtg atcgggtgtg tggaaaaggt
     1381 tggggtaagc cgttcggggg tgcttgtttt ggggggttaa aattgtggtt attttttgcg
     1441 caattctcgc gcgtgatcct tgtatttata cttaagggat aaatggcgga tatgaaatag
     1501 tggtttagcc cagtaatgac gaggctttga gtgggttttg acaggtcaaa gaaaatggag
     1561 cagaattgag gcgtttttaa tcggcgttgg ggagtgcgtc aacactcccc aacatttcga
     1621 atgtgtcacc tcagcggcaa actctggtga catgtactgg ctcgcaatgc acaggtacgt
     1681 gatgaatata ccacatcaaa tcacagcctg cccagatcgg agcaggctta atgtcagaag
     1741 ataaattcct ttcggactac agcccccgtg atgcagtttg ggatacccag cgcacgctta
     1801 ccgattctgt cgggggtatc taccagactg ctgctgaatt cgagcgctat gcactccgta
     1861 tggcctcctg tagcggtttg ttacgttttg gttggtctac catcatggaa accggagaaa
     1921 cgcgcctacg gcttcgtagt gcgcaatttt gccgtgtccg tcattgccct gtctgccagt
     1981 ggagaagaac cctcatgtgg caagcccgtt tttatcaggc tctaccgaaa atcgttgtgg
     2041 attacccgtc ttcccgatgg ttgtttctga cgttaactgt caggaactgc gagataggtg
     2101 a
//
