LOCUS       NZ_CP079615             2828 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC15_AI1547PC
            plasmid pAI1547P_P9, complete sequence.
ACCESSION   NZ_CP079615
VERSION     NZ_CP079615.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130504
            Assembly: GCF_019317025.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC15_AI1547PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2828)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC15_AI1547PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:02:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,494
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,219
            CDSs (with protein)               :: 5,219
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 66 of 151
            Pseudo Genes (incomplete)         :: 85 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 20 of 151
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079615.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC15_AI1547PC"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547P_P9"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            147..1253
                     /gene="mobV"
                     /locus_tag="KW550_RS27365"
                     /old_locus_tag="KW550_27340"
     CDS             147..1253
                     /gene="mobV"
                     /locus_tag="KW550_RS27365"
                     /old_locus_tag="KW550_27340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791318.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_218423645.1"
                     /translation="MYSIIRKQSHKKTAIQAVHNHNMRIVIEENVNSKKSNLNEILIGT
                     ENTRSDIMSYIKNNDIVIRNKDTVIFNEFVLTASPEFFFNNKDGSKKTKSEYNDNLNEW
                     VKTQIEFLEKENYGKCVNAVLHLDESTPHIHALILPIRDNKLNNKSFWRGKNSYGRLQD
                     LYNASNSKFGLKRGEEKSKTLVDHTTLKDYRELIKQDLEEEKEFYNELSKDILDIPPRK
                     NFIGLEKKYSAEEVKEIASATFKKLNRQRRRAKFRAKKSDEKADAATSEFYKKKKETSK
                     IEFFYNENREKLEKISVENSTLKTQNLELKQSQSDLDLVRKFLPMELQSLVVRARELAS
                     GGDSGGTKHTAEPTSTADLTTYKRPKYK"
                     /name="mobV"
     gene            complement(1271..2005)
                     /locus_tag="KW550_RS27370"
                     /old_locus_tag="KW550_27345"
     CDS             complement(1271..2005)
                     /locus_tag="KW550_RS27370"
                     /old_locus_tag="KW550_27345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000155158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142428737.1"
                     /translation="MTIQEVKKPRVRTKTENDKLTEYKMNPFVFDKELKIETKTRNLTV
                     RKGTELVNKDNADESESYFSNIVQKKEVDKEEFIKLFTSQIKVYFDLTKTAHKIFLIIL
                     ALYQKEIGKDYVLLTCKKAQNVAKTLDFELSAPIFYRGIKELVEKKIIAKSVDKIVFYI
                     NPAVFFNGDRARFVTEVIKKKEEIEKKQFLEELETTSKNKDFETDDSVENLDLMIARLQ
                     KKKEELERKEKFGQWQDLEDAS"
                     /name="hypothetical protein"
ORIGIN
        1 cgaaccggtt tgcaccggtt caacgtcaaa accttacaca gctgcacagg tggcatttaa
       61 cgccacatga gaatgtttcc gacattctca taatattgga tttatccaaa aaaatggggg
      121 ttgtatatta atatggagaa ataaaaatgt attcaataat caggaaacaa tcacacaaaa
      181 aaacagctat acaagctgta cataatcata atatgagaat agttatagag gagaatgtaa
      241 attctaaaaa atcaaatttg aatgaaatat taattggtac ggaaaataca agatctgaca
      301 taatgagtta tattaaaaat aatgatattg tcattagaaa taaagacaca gtaattttta
      361 acgaattcgt tttaactgca tcaccagaat ttttctttaa caataaagat ggttcaaaaa
      421 aaaccaaatc tgaatataat gacaatttaa acgaatgggt taaaacccaa attgagtttt
      481 tagaaaaaga aaattacgga aaatgtgtta atgcagtttt gcatcttgat gaatcaacac
      541 ctcatattca tgcattaatt ttacctatcc gtgataacaa attaaacaat aaatctttct
      601 ggcgaggtaa aaattcttat ggaagattac aagatttata taatgcatca aatagtaaat
      661 ttggtttaaa acgtggtgaa gaaaaaagta aaactttagt tgatcataca acactaaaag
      721 attacagaga attaatcaaa caagatttag aagaagaaaa agaattttat aatgagttat
      781 cgaaagatat attagacatt ccaccaagaa aaaattttat tggcttagaa aaaaaatact
      841 ctgctgaaga agtaaaagaa attgcttcag ctacttttaa aaaactaaat agacaaagaa
      901 gaagagcaaa atttagagct aaaaaatctg atgaaaaagc agatgcagct acaagtgaat
      961 tttataaaaa gaaaaaagaa acatcaaaaa ttgagttctt ttataatgaa aaccgagaga
     1021 aattggaaaa aatctctgtg gaaaattcca cacttaaaac ccaaaactta gagcttaagc
     1081 aatcacaaag tgacctagat ctggtgagaa aatttttacc tatggagctg caaagccttg
     1141 tcgtcagagc cagagaactg gcctctggcg gcgattctgg cggtacaaag catactgcag
     1201 aacctacatc aactgcagat ctaactacct ataaaagacc taaatacaaa taaaaagccc
     1261 atcagggctt ttatgatgca tcttccagat cctgccattg cccgaatttt tcttttcgct
     1321 ctaattcttc ttttttcttt tgtaatcttg caatcatcag gtctaaattt tcaacactat
     1381 catcagtttc aaaatcttta ttttttgatg tagtttctaa ctcttcgaga aattgttttt
     1441 tctctatctc ttcttttttc ttgataactt cagttacaaa tcttgctcta tcaccattaa
     1501 agaaaactgc aggatttata taaaaaacaa ttttatctac agatttagca ataatttttt
     1561 tctctaccag ttcttttata ccgcgataaa aaattggtgc tgaaagctca aaatctaatg
     1621 ttttagcaac attctgagct ttcttacatg tcaataaaac ataatcttta ccgatttctt
     1681 tttgatataa agctaaaatt ataaggaaaa ttttatgagc tgtttttgtt agatcaaaat
     1741 atacttttat ttgagatgta aataatttta taaattcttc tttatctact tctttctttt
     1801 gaacaatatt agaaaaatag gattctgatt cgtcagcatt atctttattt actaattcag
     1861 taccttttct aacagttaaa tttcttgttt ttgtttcaat ttttagttct ttgtcaaaaa
     1921 caaaaggatt catcttatat tctgttaatt tatcattttc tgtttttgtt ctaactcttg
     1981 gtttttttac ttcttgtatt gtcataactt attcctcttt aaatttagat acttaatact
     2041 agcgttataa ccgatttttt aaacaagtca atacaaaacg ataaaaaaaa atcgtttttg
     2101 aggcttaaaa cgataaataa aattctagaa attttagcct gtttatcgtt tttatgggtg
     2161 caaaacgata aagtttatta ctctagagta taaaacttat tactctatcg ttactttttt
     2221 aaggatagag tataaaactt tgtacttttt gttttttaga aaaaatggag taaaaccaga
     2281 cgtaccaagg cttagagagg agttttagga tttgagtttt tctgcaagaa ttaataaata
     2341 ttaagatcta agagtaaaat caaaatctaa aaccgccctc gccgggcagg ccaacccctc
     2401 gaatccacat acagcaagct gtacgtggac tctcacggtt taagtaacta caaaaacccg
     2461 tcatagagcg ttagagagcg ttctacagct actgggggga acccctaaac ccgttccccc
     2521 caccagaaca agtactcttg ttccgggtcc ccccacccct gcgagtggtc aagaacttgc
     2581 ccacatcgca acccgtcttt tttgttcatg tattttatta ttattgtgat caatcatttt
     2641 taaagtaaaa gtttactttt gctttaaaaa ggattcagca acgagccgtt aggcgaggcg
     2701 gtagctattt gacagaatat attaaagtga taactttaaa tatatacgtt gagtttactt
     2761 tcggtctatc actcactaga ccgagctacg ctcagtcgtt cgttgggggg catagcccac
     2821 ccaagccc
//
