LOCUS       NZ_CP079613             3998 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC15_AI1547PC
            plasmid pAI1547P_P7, complete sequence.
ACCESSION   NZ_CP079613
VERSION     NZ_CP079613.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130504
            Assembly: GCF_019317025.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3998)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC15_AI1547PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3998)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC15_AI1547PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:02:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,494
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,219
            CDSs (with protein)               :: 5,219
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 66 of 151
            Pseudo Genes (incomplete)         :: 85 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 20 of 151
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079613.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3998
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC15_AI1547PC"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547P_P7"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            complement(join(3261..3998,1..117))
                     /locus_tag="KW550_RS27320"
                     /old_locus_tag="KW550_27295"
     CDS             complement(join(3261..3998,1..117))
                     /locus_tag="KW550_RS27320"
                     /old_locus_tag="KW550_27295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071579761.1"
                     /translation="MIIQEEHNIDFFKNQMPNKPYCTNNLDMGLSIRNKAKALEMLYLQ
                     ANQPAIQTCLLFDLDKKNSFYTFEQVGLPIPHFITKTPKTGRCHYGYMLKAGVCKTQQA
                     RLKPLKYAAAVEMAMAKKLKADLGFAGLITKNPLNDHWSPFWSGADLYDLDYLADFVDL
                     EKPQIQKKKSEAYGLGRNVNLFEDLRQYAYRTVLNFKKISTFEKFENELLLKAQGLNTF
                     CNPQNPLQYKEIKATVRSVARWTWKNFDSHTFSQIQSNRAKKPRKTNVKNEMLDILMSK
                     GVL"
                     /name="replication initiation protein"
     gene            complement(654..1847)
                     /gene="mobQ"
                     /locus_tag="KW550_RS27325"
                     /old_locus_tag="KW550_27300"
     CDS             complement(654..1847)
                     /gene="mobQ"
                     /locus_tag="KW550_RS27325"
                     /old_locus_tag="KW550_27300"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_076997031.1"
                     /translation="MATFHISFKKLRRSEGKSSVYLSAYQNREKTKDNRTGATWDYSKK
                     EGFFGSAILSPAGTPAELVKDSGTLWNAVEAGEKRKDAELCRYLDIAIPKELDDGQKKQ
                     IVLDYCQENFVDYGMIADIAFHDLDSHNPHAHVMLTLRTVSPNGFGNKQREWNNRENIE
                     AWRVNWEIIANDRLKKYGHKSRIDSRSLKDQKEEAERKAVFAKTPKEKAKWISKTIELD
                     RTPMTRIHRHQWRKGQKLRAMEQKEKALLLKIANATYLQQTKPPQPEETMKIEKKPLAR
                     SIIDNLKALYKKTQHIFKSKPNVNKNKKEEKEDPQNFVSSYVINEFGEHILKTELETKP
                     KTGTGTGTGGNNGGGKMGSGSGMSPMNQPQPKIEEPEPEPMPEFEDQQPKRKKKFGM"
                     /name="mobQ"
     gene            2091..2474
                     /locus_tag="KW550_RS27330"
                     /old_locus_tag="KW550_27305"
     CDS             2091..2474
                     /locus_tag="KW550_RS27330"
                     /old_locus_tag="KW550_27305"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071579763.1"
                     /translation="MNKLITEAEGAKIESVFKYILEASESILIEHGHVITGQIIKNKKF
                     FADNGHKDFERLEYYLSSAISSLVEDKVTEGIKDINTDENLVFKKINELSDKEKLILAE
                     CIIKHFEYSNVRGMQKAFNIFGG"
                     /name="hypothetical protein"
     gene            2478..2762
                     /locus_tag="KW550_RS27335"
                     /old_locus_tag="KW550_27310"
     CDS             2478..2762
                     /locus_tag="KW550_RS27335"
                     /old_locus_tag="KW550_27310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_071579762.1"
                     /translation="MSKTTAQQIADLQNKLQALRTKKARQDRREETRQKIILGAEVAKV
                     LGKKPEEINKALILGLLSKINELDEEEKQEFTRLGLNILEEWKNENRKP"
                     /name="conjugal transfer protein TraD"
     gene            complement(3001..3264)
                     /locus_tag="KW550_RS27340"
                     /old_locus_tag="KW550_27315"
     CDS             complement(3001..3264)
                     /locus_tag="KW550_RS27340"
                     /old_locus_tag="KW550_27315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045287009.1"
                     /translation="MIINGKKIKAKEIMEMTGRSERTVRKYFSQSRDDYEKTAMDRRRQ
                     AYELRSQGLKWQQVADKMGCSYHGAVALYRRYVALDMPQNSL"
                     /name="hypothetical protein"
     Typing          complement(838..1847)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="85.0"
                     /evalue="0.0"
ORIGIN
        1 aagggctttt gccttgttcc ttatgcttaa tcccatatcg aggttatttg tacaataagg
       61 cttgttaggc atttgatttt taaaaaaatc gatgttatgt tcttcttgta ttatcatttt
      121 ttcagtcctt tttatctggc cctactctct gttttctgtc gccaaaacaa aatcgcagag
      181 ggtggggttt ttatttttat agatttttca atcctgtacc agttctaacc gatctcaaaa
      241 atttgtcaag tgtgcgtcta accatatcag ataacagccc aacgaagttg gggcagttct
      301 ttacatacgg cagcaaagca ttactatcag atctatggtg cgaagcatta ccgaagatag
      361 aaaaacaata aaaaaagaaa aaagagtatt gttcgaagaa aaattggcga ttcgattttt
      421 tttggtgaat atatgaaaaa aaagaaagtg cagaaaaaac ggaaaagaaa taagcatagt
      481 aaatttttta aaatgcttat gaagtcagtt aatgaagctg tggcaataca taaaggggaa
      541 atagaaccgg cgaggatcac aactctaaaa atgtagtatc ttatagtata gtattaaata
      601 atattaagtt gtattaagtg atactactat ataggaatat ataccactat atactacatt
      661 ccaaatttct tcttcctctt aggttgctga tcttcgaatt ccggcattgg ttccggctca
      721 ggctcttcaa tttttggttg tggttggttc ataggagaca ttccagagcc tgaacccatt
      781 tttccgcctc cattatttcc accggttccg gttcctgtgc ctgttttagg ttttgtttct
      841 aactctgtct ttaatatatg ttcgccaaat tcatttatta cataactact aacgaaattt
      901 tgaggatctt ctttttcttc ttttttattt ttatttacat taggttttga tttaaatata
      961 tgctgggtct ttttgtataa tgcctttaaa ttatcaatga ttgaccttgc aagaggcttt
     1021 ttctctattt tcatagtttc ctctggctga ggtggtttgg tttgctgtaa gtatgttgca
     1081 ttagctattt ttaataataa tgctttttct ttttgctcca tagctcttaa tttttgacct
     1141 tttcgccatt ggtgcctgtg tatcctggtc attggcgttc tgtccagttc aatagttttt
     1201 gaaatccact tggctttctc tttcggagtt ttagcaaaaa cagcctttct ttctgcctct
     1261 tctttttggt cttttaatga acgggagtca atacgagatt tatgaccata tttttttaat
     1321 cggtcatttg ctattatttc ccagttaact cgccaggctt caatgttttc tctattattc
     1381 cattctcttt gtttgttccc aaatccattt gggctaacag ttcttaaagt tagcattaca
     1441 tgagcatgag ggttatgact atcaagatca tgaaatgcta tgtctgcaat cattccataa
     1501 tccacgaaat tttcttggca gtaatcgagg acgatctgct tcttctggcc gtcgtccagc
     1561 tccttgggga tggctatgtc cagataacgg cataattcgg catcctttcg cttctcgcca
     1621 gcctctacgg cattccagag ggtgcctgag tccttcacca gttcggcagg tgtgccggca
     1681 ggggagagga tagcagagcc gaaaaatccc tctttttttg aataatccca ggttgccccg
     1741 gttcgattat cttttgtctt ttctcggttt tgatatgcag ataaataaac cgaagattta
     1801 ccttctgatc ttcgtaattt tttaaagctg atatgaaatg tcgccatagt ctacccctta
     1861 ctttttttgt cttttgaatt ttggttttta gccccgcagg gcccatacgt cgcaagcgac
     1921 gtgtaagtgg gcattactaa tattattttt tcggttgcac ctcaaaataa taagtaatga
     1981 accccaggct tcgcccaata ttaaatatta tttgttttat tctaaaatat atttgactaa
     2041 agtaaataat ggaggtaata aataacaaaa taaataatta ggaggttatt atgaataaac
     2101 ttataacaga ggcagaaggt gcaaaaatcg aaagtgtttt taaatacata ttagaggcat
     2161 ctgaaagcat attaatagag catgggcatg ttattacggg gcaaataata aaaaacaaaa
     2221 agttctttgc tgataacggg cataaagatt ttgaaaggtt agagtattac cttagctcgg
     2281 caattagttc tcttgtcgag gataaggtaa cagaaggcat taaagacatt aacacggatg
     2341 agaaccttgt ttttaaaaaa ataaatgaat tgagtgacaa ggaaaaatta attttagcag
     2401 agtgcattat taaacatttt gaatattcaa atgttagagg aatgcaaaag gcatttaata
     2461 tttttggggg gtaatggatg agtaaaacga cagcacagca gatcgcagat ttgcaaaata
     2521 aactacaagc attaagaaca aaaaaagcaa gacaggacag aagggaagaa acaagacaaa
     2581 aaataatcct gggtgcagaa gtggctaagg ttttaggtaa aaaaccggag gaaattaaca
     2641 aggctttaat tcttgggttg ttaagtaaaa taaatgaact tgacgaagaa gaaaaacaag
     2701 aattcacacg attaggatta aatattttag aagagtggaa gaatgaaaat cgtaaaccgt
     2761 gaacaataaa aaaccagccg atcttggctg gttttttact gtgaagggtt gccaggcttg
     2821 cctggaggtc ttaaaaaggc tcagagaggc tctcagggct tatgggtggg tttgttgatt
     2881 gttgggtacc tgagtgcctc tcagttcgag atacagggcc cggatacggg gaaaggggaa
     2941 aaaatccccc caggggtgga gggtttggtt aggttagggg gaaaaactgc ttagaagtcg
     3001 ttacaggctg ttttgaggca tatctaaggc aacataacgg cgatacaggg caacggctcc
     3061 gtgatacgaa cagcccattt tgtcggctac ttgttgccat ttcagcccct ggcttcgtag
     3121 ttcgtaagcc tgacgacgac gatccattgc tgttttttcg taatcgtcac gagattgaga
     3181 aaaatatttt cttacagttc tttcactacg acctgtcatt tccattattt cttttgcttt
     3241 tattttttta ccattaatga tcataaaacc cccttgctca ttaatatgtc taacatttca
     3301 tttttaacat tggtttttcg aggttttttg gctctgtttg attggatttg tgaaaatgta
     3361 tggctatcaa aatttttcca agtccaacgg gctacacttc taactgttgc ttttatctct
     3421 ttgtattgta acgggttttg tggattgcaa aaagtgttta agccctgtgc ctttaatagt
     3481 agttcgtttt cgaatttctc gaaagtggat atttttttga aatttaaaac cgttctgtaa
     3541 gcatattgcc gtagatcttc aaacaaatta acattgcgac ctaaaccata agcctcgctt
     3601 tttttctttt gtatttgagg cttttctaag tccacaaaat cagctaaata atccaggtca
     3661 taaaggtcag cacctgacca gaacggcgac cagtgatcat tgagtgggtt ttttgtaatc
     3721 aatccagcaa accccagatc tgcttttagt tttttcgcca tagccatttc aacggctgcg
     3781 gcatacttca acggctttaa ccttgcttgt tgtgtcttac aaaccccggc tttcagcata
     3841 tagccgtagt gacaacgacc tgtttttggt gtttttgtaa taaagtgagg tatgggtaag
     3901 cccacctgct caaatgtata gaatgaattt ttcttatcta gatcaaagag taagcaagtt
     3961 tgaatggctg gctgatttgc ctgtaaatac agcatttc
//
