LOCUS       NZ_CP079612             4991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC15_AI1547PC
            plasmid pAI1547P_P6, complete sequence.
ACCESSION   NZ_CP079612
VERSION     NZ_CP079612.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20130504
            Assembly: GCF_019317025.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC15_AI1547PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC15_AI1547PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:02:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,494
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,219
            CDSs (with protein)               :: 5,219
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 66 of 151
            Pseudo Genes (incomplete)         :: 85 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 20 of 151
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079612.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC15_AI1547PC"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI1547P_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            join(4329..4991,1..396)
                     /locus_tag="KW550_RS27290"
                     /old_locus_tag="KW550_27265"
     CDS             join(4329..4991,1..396)
                     /locus_tag="KW550_RS27290"
                     /old_locus_tag="KW550_27265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(426..683)
                     /locus_tag="KW550_RS27295"
                     /old_locus_tag="KW550_27270"
     CDS             complement(426..683)
                     /locus_tag="KW550_RS27295"
                     /old_locus_tag="KW550_27270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            1101..1532
                     /locus_tag="KW550_RS27300"
                     /old_locus_tag="KW550_27275"
     CDS             1101..1532
                     /locus_tag="KW550_RS27300"
                     /old_locus_tag="KW550_27275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            complement(1626..2030)
                     /locus_tag="KW550_RS27305"
                     /old_locus_tag="KW550_27280"
     CDS             complement(1626..2030)
                     /locus_tag="KW550_RS27305"
                     /old_locus_tag="KW550_27280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(2825..3226)
                     /locus_tag="KW550_RS27310"
                     /old_locus_tag="KW550_27285"
     CDS             complement(2825..3226)
                     /locus_tag="KW550_RS27310"
                     /old_locus_tag="KW550_27285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3226..3417)
                     /locus_tag="KW550_RS27315"
                     /old_locus_tag="KW550_27290"
     CDS             complement(3226..3417)
                     /locus_tag="KW550_RS27315"
                     /old_locus_tag="KW550_27290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3833..3999
                     /locus_tag="KW550_RS27760"
                     /pseudo=""
     CDS             3833..3999
                     /locus_tag="KW550_RS27760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          3539..3941
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 aatagcaatc gttattctat gtcgctacca caaatatata tgtatgttgg aaatagatta
       61 acgcaaatga acaattcatc tgccagtgca tttaagacgg tagtaaccga aattggtgat
      121 gaaatttgga aagtatggca aacaaaacca agtctgtttt gtattcaccc aaatgggagc
      181 tcaacgccaa ataataaaag atctttcagg aatatgtttc agtatgaagt aaatgatgca
      241 aacacagcat ctgtcgtatc tggagcctta ggtattccaa tcgcgacatt aactgcagga
      301 aataaaactg tttcaggaaa aataataaag gttaatcaga cgcagctaga taaacaagtc
      361 cccaacattg tagctctcgc tggtatgatc gaataaaata gcaaggccct taaaagggcc
      421 tttttttatt tgtttttctt tactgcttgc agcgccctgc cagcactaga ggccaactct
      481 ttgattacat tatctttact ttcaacaacc tcagtaagca actcgttttc gttttccagt
      541 ttattcaaag cgttctgagt atcttcaata gcatcatcat acccttcggc atagccatcc
      601 atccaaccaa gagtatacgt ttggtccaaa agatcagctt gcttatcctg cagatcttta
      661 ttctgattat tgttagagcc catgtttttt cctcatttgt tggcgcatct gagttttcaa
      721 accaggagga attccatttc taagtttctc acttagtctg actggtggtg tgtttcctga
      781 gactggatta cagtcagcat ccaccccgac atctttcttt ttatagtcgc caatattcct
      841 aacgttatct gtagtcatag aaaaccacgc ccattgctgt gaataaccga actataaacc
      901 agaaaaaaaa cgtacggctt atcataacac ttgacacaaa aaaacaccgc tactctccaa
      961 gcaaaaaaca taaaattgga aaaacaaaat cacaagcaca tgataacaat agatattaat
     1021 atttacttac atttagtgag ttttataatt agaaaaacaa tgtaatttaa taatcacaaa
     1081 cattacctaa ggacgaactg atgaaaatac ccgcgcattt gaagcataaa ccaattattc
     1141 aagtcgaaaa ttacgaccgc attgacggcc cacatgccga tgacactgat gctatggggc
     1201 tatctgtagg tattgctcaa tggaacactc ctggatggac tgagctttcg gcaaaggttt
     1261 ggcgaaacac aggagaaaaa tggtcaagac aatcagaaga gctgcctctt caccgggtaa
     1321 tcgaccttgc aactctgatc tgtatcacca tggactacag taaaaatggg cgactttcat
     1381 ccagtgatga ttttcccgtg actcgctcaa ctgataaccc tgagctagca catcacactg
     1441 agtttatgaa aaaagagtta aaacaaaata aaagcaatct tgatgtaagc ctcaaacgcc
     1501 tctcgactga attgaagaga cttggctatt aaaactagct ttagaaatgt ctacctactt
     1561 cacagacgaa tttaccataa catccgtttt tcgaaccata atggcaggct atagcctgcc
     1621 gtaattcacc ggaaaaaatc atccacagag tcgctccact catgcccgga aagagaccac
     1681 accttgttta tagggggagg ataaccactc ctgcagtacc cgttttttcc cacgaaatcg
     1741 aatgccccgt gcgggtatcc attgatcagg agtacgcact tctgactgtc ttctgaccag
     1801 ccaattttaa catcagaagg aatgtgaccg tctgaaacgt cttcggcatt gtagatgtgt
     1861 actgcgtcca taatcgggtt tccctcgacg gactcatcga gcgcatagaa atacccggtc
     1921 cggccatcgt cttcgaacac ggcggccagc atgccctcag gagcgaggct ctttataacc
     1981 tgttcctccc cgacaacgag ctgggcctgt atcgtcacta aaatggtcat caggtctgtt
     2041 ctcctttcct tggttgcttc ggcagccagc tttcagacaa gcggataatt taccataaca
     2101 tccgttatca gcatcgtcag aaacgcgctg agggcgtttc tgacgggaaa ccggtaaaac
     2161 aggcaacaaa ccacccgaaa acccgccaga aacgcgcagg ctctgttttt atggcatgca
     2221 tgagtatgca cgcaagtgca tagcgcgaat attcacgcca ttcagacagg gtaagtcctg
     2281 tttccggcgt tcttcccatc cgaaaacggt gaacggggac gcaatttatt gcgtggccgt
     2341 gaagcgttgc cggcgcagcc ggaaaaccgg ttttcagcac gttcaggaat cgggttcgtc
     2401 gacggccggc aatcacgtta tggcaagtcg ccggacgact caccacacga ttcaccggcg
     2461 actctgcact agagtcgtac ctagagtcgc cgcgactaaa aaacaaccaa acggggagtc
     2521 gggtctagag tcgggtcgtt attaactcat tgtttttata gccctgagtc gttaccgact
     2581 ctatgacgac tcgccgggga ctctatgacg agtcgtcata gagtcggatc tatataaata
     2641 aaatttaaaa aacgaaatct caggaaagta aactactgat attaaataca aatctgcaaa
     2701 attttaattt tgcgtggggt gtgggtattt ttagtggtga ggagcgttca gagatctgac
     2761 tatttttggg aaggttcagg aactccccgg gatggccgga gaggaaaact gaagcatgac
     2821 agggtcagga ttttttccag aatttccacc atggcgccgg ggattcagtt aattttgcct
     2881 ggtgattttc aagaaggagc atggcctgtt tcaggctgtc aatgtgcgaa tctttggaca
     2941 aaagtaaagt gttcaggtgt tcaatctcct gtttcagatg acgaatcacc tgttcacact
     3001 ggtcaacaga ggctgtatcg cgctgttcag agacctgtcc agaatggtgt tcacccttca
     3061 gttgttcaaa gggaccaaag acacgtaaaa gctctgaagt atctaccatt tttgcattgc
     3121 gctcaccgct acaggtggac aggtcacctg ctttaattaa cctgtgcagt gttgttctac
     3181 tcttacccgt cagtcgggct gcctcactaa tagacactct ggccatcagt taccatcctg
     3241 taatgcatcc agtctcgagg acagtgtacg gaaaagatgc tccgcatcat cgtggagttt
     3301 ctcacaaagg tcggcctcga catcaagatc aagctcgtta agcttctcca gcaggagcag
     3361 agattgatgc tggatgaatt tagccatgtt cagcgctgtt ttctgttgtt tcgtcataag
     3421 aggcctcaga gcgtcagtgc tcagtgtagg gatgttctct tttccgcttc ctcgctcact
     3481 cagtcgctac gctcctgccg ttcggctgcg gcgagcggca ggagcatgcg tatgaaagct
     3541 cgagaaaacc gagcgatcac gtaatttaga aaagggaagg ccgcacagcg gccgtttttc
     3601 cataggctcc gcccccctga caagcatcac agaaacggac gctcaaatca gtggtggcga
     3661 aacccgacag gactataaag atatcaggcg tttccccctg atggctccct cgtgcgctct
     3721 cctgttcctg cctttcggtt taccggtgtc attccgctgt tatggccgcg tttgtctcat
     3781 tccacgcctg acactcagtt ccgggtaggc agttcgctcc aagctggact gtatgcacga
     3841 accccccgtt cagtccgact gctgcgcctg ttccggtaac tttcgacttg agtccaaccc
     3901 ggaaggcacg acaaaacgcc actggcagca gccactggta aggggtgtac aagaattact
     3961 ggtgcagagt tcttgaagtt acagcctaac tacagctaaa ctgaaaggac agatttggtg
     4021 gcagcggtct tgtacaccct gttaccacgg ttcagaagtt ccccaactta ctgatccttc
     4081 gaaaaaccac ctccccaggt ggttttttcg tttacagagc aaaagattac atcccgcagg
     4141 ttaggatctc aagaagatcc ttttaatcgg aattcgacaa ctccagataa gtcatggtga
     4201 gccagccaac cccttcgact gaatatcgtt ccaaaaaaag gcagtcagct gaaagaaact
     4261 aacagtagaa caataatctc tagtaccctg aatctaagct aacaacaaaa ctagattagg
     4321 agttatagat ggcgatctat gccgtatgga ataacaaggg tggtgtaggg aaaagttacc
     4381 ttacttttca gttagcctct gaatatgcca gacagaaccc tactaaaaag gtcctggtgg
     4441 ttgacctgtg cccacaagcg aactcgtcct ctatgttact tggtggaatg ataaatggcg
     4501 aaaacacact aaaccagatt cattcagcaa tacagagaaa gacaatatct ggatatattg
     4561 aggataggat cagaagtcca tatattccta ccaacactgg ttctagctat gtaataaatg
     4621 tatctacaca caatagtaaa gttccaaata atctatatct tgtcactggc gatgaacaat
     4681 tagaactcca agcatcaaga gttgttgggg catcatttcc aggtccccat gatgcatggc
     4741 gtactgttca cctctggatt aatgatttaa tcagtgacat ttgcaactca tggaataatg
     4801 aagatagctg cgtattcatt gactgcaacc ctagcttctc tatttataca gagttagctt
     4861 taaccgcagc agagcgcctt ttaattcctt tctctgccga tggttcatca aagagagcag
     4921 ttaaggctgt actttcttta gtttatggtg agcgtcgcca tcagaatgaa ccacaatcag
     4981 atttctatct t
//
