LOCUS       NZ_CP079192             4863 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC14_AI2040MC
            plasmid pAI2040M_P6, complete sequence.
ACCESSION   NZ_CP079192
VERSION     NZ_CP079192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115570
            Assembly: GCF_019287195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4863)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC14_AI2040MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4863)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC14_AI2040MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:59:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,586
            CDSs (total)                      :: 5,459
            Genes (coding)                    :: 5,299
            CDSs (with protein)               :: 5,299
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 68 of 160
            Pseudo Genes (incomplete)         :: 95 of 160
            Pseudo Genes (internal stop)      :: 25 of 160
            Pseudo Genes (multiple problems)  :: 24 of 160
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079192.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC14_AI2040MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI2040M_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            join(4187..4863,1..622)
                     /locus_tag="KWZ53_RS27800"
                     /old_locus_tag="KWZ53_27800"
     CDS             join(4187..4863,1..622)
                     /locus_tag="KWZ53_RS27800"
                     /old_locus_tag="KWZ53_27800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_045265534.1"
                     /translation="MMVNFSLSNAFSFMDAQNMSMLAVSSAKDDINLANVVSVSDVRIL
                     KSALIFGANASGKSNLMKTISLMKDIVLHSVQAIESSITKNVIPFLLDEDGPNKPSEME
                     MTFISDGVKYRYGLSIFQGKIKEEWLYYTPKSRETILFERDGLSIEVNKAAFSESNLFI
                     KEGVIQKTREDVPFVSVVAGFNGEHSKRVVNWFNNIVFLSGSNEGMFTAITMKLINESE
                     DFKAWLKKILPAFQINDIYLDEVAPDFPFGNIKTDDDNLKNLFSSIQNFAKNQKVFSLR
                     VVKKTASGEISVPIDFESEGTKKIVYLLGPIYNAMINGNLLLVDEFDSKFHTLLSKFLF
                     RIFHAQSEGLSQIIAAVQDVNLMNTDCFRRDQIWFVDKDIKSGSSHLYSLVEYKEKQRT
                     LKSSYGHDYLSGAFDAIPLFDNLDEFEKLMPEG"
                     /name="ATP-binding protein"
     gene            695..1063
                     /locus_tag="KWZ53_RS27805"
                     /old_locus_tag="KWZ53_27805"
     CDS             695..1063
                     /locus_tag="KWZ53_RS27805"
                     /old_locus_tag="KWZ53_27805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045626380.1"
                     /translation="MKTTDRFISVSFRYFHNVDDIGQSIDSWRVDGSLPDLIEKLVYLT
                     ANGITKVSSDGIFTNYTRFPDSAVNDFKCPDEISVDENWGVIKNIGGQKRRVAGFLKDN
                     VFYIVFFDKDHRFWKSRK"
                     /name="hypothetical protein"
     gene            complement(1300..1413)
                     /locus_tag="KWZ53_RS27810"
                     /old_locus_tag="KWZ53_27810"
     CDS             complement(1300..1413)
                     /locus_tag="KWZ53_RS27810"
                     /old_locus_tag="KWZ53_27810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032634168.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     gene            1829..2020
                     /locus_tag="KWZ53_RS27815"
                     /old_locus_tag="KWZ53_27815"
     CDS             1829..2020
                     /locus_tag="KWZ53_RS27815"
                     /old_locus_tag="KWZ53_27815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_045265536.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELALDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2020..2442
                     /locus_tag="KWZ53_RS27820"
                     /old_locus_tag="KWZ53_27820"
     CDS             2020..2442
                     /locus_tag="KWZ53_RS27820"
                     /old_locus_tag="KWZ53_27820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_045265535.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGVNSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1301..1708)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.484"
                     /coverage="99.0"
                     /evalue="1.3e-157"
ORIGIN
        1 ttggctaaaa aaaatacttc cagcattcca gattaatgat atttacctcg atgaggtcgc
       61 acctgatttt ccatttggaa atataaaaac agatgatgat aatttaaaaa atttatttag
      121 ttcaatacaa aattttgcaa aaaaccagaa ggttttttct cttagagtag tgaaaaaaac
      181 agctagcggt gagatttcag tacctattga ttttgagtct gagggtacta aaaagatagt
      241 ttatcttctt ggtccaatct acaatgccat gataaacggt aacttattgt tagttgatga
      301 gtttgattct aagtttcaca cccttttgtc taagtttttg tttagaatat tccatgcgca
      361 aagcgagggg cttagccaaa taatagctgc tgttcaggat gttaatctaa tgaacactga
      421 ttgttttaga cgtgaccaga tttggtttgt tgataaagat ataaaatcag gaagtagtca
      481 tctctattct ttggttgagt ataaagagaa gcagcgaact ttaaaatcat cgtatgggca
      541 tgattattta tctggtgcat ttgatgctat cccattgttt gataatttag atgaatttga
      601 aaaacttatg cctgagggat gatttatgtc aaagagaggc cgcggtcttc gtagctcttc
      661 gaggaaagag gaaacaaaat cctcaaagag cattatgaaa actacagata gatttatttc
      721 tgttagtttt agatattttc ataacgtcga tgatattggt cagtctattg attcttggag
      781 ggttgacggc agtttgccag atttaattga aaagcttgtt tatcttacag ctaatgggat
      841 aacaaaagtc agctctgatg gtatttttac taactacact cgatttccag attcagcagt
      901 taatgatttt aaatgccctg atgaaatatc agttgatgag aactggggtg ttataaaaaa
      961 tataggaggc cagaaaagaa gggttgctgg ttttttaaag gataatgtgt tttatatagt
     1021 tttttttgat aaggatcatc ggttttggaa gagcaggaaa taggcttagt tacgattgta
     1081 ctgtatgttg aggcaagatc ttcttgagat cactgtgttc tcgtcgtaat ctctcgctct
     1141 gtaaacgaaa aaaccgcctt ggcgggcggt tttttcgaag gttccaagag ttggcgctct
     1201 tagaaccaag gtaactggct tggaggagcg cagtaaccaa aacttgttct ttcagtttag
     1261 ccttaaccgg cgcataactt caagactaac tcctctaaat cagttaccag tggctgctgc
     1321 cagtggcgct tttgcatgtc tttccgggtt ggactcaaga cgatagttac cggataaggc
     1381 gcagcagtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgccta
     1441 cccggaactg agtgtctggc gtggaatgag ataaacgcgg ccataacagc ggaatggcac
     1501 cggtaaaccg aaaggcagga acaggagagc gcacgaggga gccgcctatc agaaatgata
     1561 ggtatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtccg tttctgtgat
     1621 gcttgtcagg ggggcggagc ctatggaaaa acggccgctg cgcggcctcc tcttttcctc
     1681 ctaccttgat cgctcggttt tctcgagctt ttataagaat ggtcttgccg ctcgccgcag
     1741 ccgaacgacc ggagcgtagc gactgagtga gcgaggaagc ggaaaagaga ctggttttac
     1801 actgagcact gacgctctga ggcttcttat gacgaaacaa cagaaaacag cgctgaacat
     1861 ggctaaattc atccagaatc agtctctgct cctgctggag aagcttaacg agcttgctct
     1921 cgatgtcgag gccgaccttt gtgagaaact ccacgatgat gcggagcatc ttttccgtac
     1981 actgtcctcg agactggatg aattacagga tggtaactga tggccagagt gtctattagt
     2041 gaagcggcac ggcttgttaa ggttagtcgc cccacaattt acaagatgat taacagtggg
     2101 aagttaagtt acacctctgt tgtaaagcac ggtaaggcta ttaaagttat tgatacttca
     2161 gagcttatta gagtgtttgg ttctcttgat ggtgtcatcg atactgtaaa atatgatgta
     2221 aaaagtgacg cagaatctac aggtgttaac agcgttggtt tacatgattt acaacataga
     2281 atcgctttac ttgaagctga aaacgatggt cttaaagggg ctgttaaggc tcgagatgag
     2341 catattgatt cccttcgtca ggctatgcag cttctggagc acaagcacga accttcttca
     2401 ccaccccatt ccccgtggtg gaaattctgg aaaaaatcct gaccccgtca tgcttccgtt
     2461 ttcctctccg gccatcccgg ggagttcctg aaccttccca aaaatcgtca gatctctgaa
     2521 cgctcctcac cactaaaaat acccacaccc cacgcaaaat taacattttg cagatttgta
     2581 tttaatatca gtgggttact ttcctgaaat ttcgtttttt aaattttatt tatatagatc
     2641 cgactctatg acgagtcgtc atagagtccc cggcgagtcg tcatagagtc ggtaacgact
     2701 caggactata aaaacaataa gttaataacg acccgactct agacacgact ccccgtttgg
     2761 ttgtttttta gactcggcga ctctgggtac gactctagtg aagattcgcc ggtgaatcgt
     2821 gtggtgagtc gtccggcgac ttgccataac gtgattgccg gccgtcgacg aacccgattt
     2881 ctgaacgtgc tgaaaaccgg ttttccggct gcgccggcaa cgcttcacgg ccacgcaata
     2941 aattgcgtcc ccgttcaccg ttttcggatg ggaagaacgc cggaaacagg acttaccctg
     3001 gctgaatggc gtgaattttc gcgctatgca cttgcgtgca tactcatgca tgccgtaaaa
     3061 acagagcctg cgcgtttctg gcgggttttc gggtggtttg ttgcctgttt taccggtttc
     3121 ccgtcagaaa cgccctgagg ccgttttagc ggtgcgtaca attagggggt tatgttaaat
     3181 ccacaccagc tacagacgta aaaaaagccc cgcagggctt tatatctata tatctgttct
     3241 catccaatcc catgtgtctt gggtgagcca tcctgcgtat tctttggtta caccaatcac
     3301 aagcaaggtg tcattattgt ccagatgcct acgcaaacga tccgacagtt gttgcgctgt
     3361 ttctccggtt gatattagcc atgtggaatc taaagggtgg caccaccccg gcgatttttt
     3421 taactcatca tatagtgcat tgtagttttg acctgcttga ttcaggtcat aagagacaca
     3481 gtaaactgac atagaaccat cctctttaat caaatgtggg gcagcccgtt agggctgcag
     3541 tcacaactta cttcttcttt tcacgattaa ttggaatttt gaacatccca ccgtttggac
     3601 gggtgatccg tttgcccttt actgtgatat aagggcgaaa aatgtatgcc tgagactcgt
     3661 ctgtctgcat ggtgcatttc ctatttttcg ccacatgagt gttgattttt gctatcaaaa
     3721 ttgtactgta gcaaccaaca aatcttgtgg ctggctttat caagctcttg aggtggtact
     3781 caagtgccgc atttgtgtat ggtttgttac gggttagttc tggtggtaca ggctaaccca
     3841 cttacttcaa aaaacgtcgt ttttctcctt tcatgcgtca tttcctagat gtttcttcac
     3901 tgtatcagct ccgctgagca taaatgctac aaagagaaac catccccatc ctgaaaccga
     3961 gtgtaaagct agcactgctg agctgacaac tgcggctaaa ggaaccattt ggtatagaaa
     4021 aaatctcata gaccccctgc atttagcttt ttttaacaag tgttccataa cgtgctatct
     4081 attaaacgca cctgttgttt tagaacgctt gtatgctatc cttaagtcct gattttgtca
     4141 atatttactc attttgttgt ttaaggatgg cgtaaggggt gttcttatga tggttaattt
     4201 tagtctttct aacgcatttt cctttatgga tgctcaaaat atgagcatgt tggcggtgtc
     4261 atccgcgaaa gacgacataa acttggctaa cgtggtttca gtgagtgatg ttcggatact
     4321 gaaatctgct ctgatatttg gggctaacgc tagcgggaag tctaatctca tgaaaacaat
     4381 ttctttaatg aaagatattg ttttgcattc cgtgcaagct attgaaagta gcattacaaa
     4441 gaacgtaata ccgtttttgc ttgatgagga tggaccaaat aaaccatctg aaatggaaat
     4501 gacttttatt tcagatgggg ttaaatatag atatggattg tctatttttc aggggaaaat
     4561 aaaagaagaa tggttgtact acacaccaaa atcaagagaa accattctct ttgaaagaga
     4621 tggtctttct attgaggtaa ataaggcggc ttttagtgag tcaaaccttt ttatcaaaga
     4681 aggggttatt caaaaaacaa gggaggatgt tccatttgtt tcggttgttg ctggttttaa
     4741 tggtgagcat tcaaaacgag tagttaattg gtttaacaat atcgtattcc tttctggttc
     4801 taatgaaggg atgtttacag caattaccat gaagttaata aatgagtctg aggattttaa
     4861 ggc
//
