LOCUS       NZ_CP079191             4991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC14_AI2040MC
            plasmid pAI2040M_P5, complete sequence.
ACCESSION   NZ_CP079191
VERSION     NZ_CP079191.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115570
            Assembly: GCF_019287195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC14_AI2040MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC14_AI2040MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 02:59:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,586
            CDSs (total)                      :: 5,459
            Genes (coding)                    :: 5,299
            CDSs (with protein)               :: 5,299
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 68 of 160
            Pseudo Genes (incomplete)         :: 95 of 160
            Pseudo Genes (internal stop)      :: 25 of 160
            Pseudo Genes (multiple problems)  :: 24 of 160
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079191.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC14_AI2040MC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI2040M_P5"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            complement(43..474)
                     /locus_tag="KWZ53_RS27770"
                     /old_locus_tag="KWZ53_27770"
     CDS             complement(43..474)
                     /locus_tag="KWZ53_RS27770"
                     /old_locus_tag="KWZ53_27770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            892..1149
                     /locus_tag="KWZ53_RS27775"
                     /old_locus_tag="KWZ53_27775"
     CDS             892..1149
                     /locus_tag="KWZ53_RS27775"
                     /old_locus_tag="KWZ53_27775"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(1179..2237)
                     /locus_tag="KWZ53_RS27780"
                     /old_locus_tag="KWZ53_27780"
     CDS             complement(1179..2237)
                     /locus_tag="KWZ53_RS27780"
                     /old_locus_tag="KWZ53_27780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(2567..2733)
                     /locus_tag="KWZ53_RS28215"
                     /pseudo=""
     CDS             complement(2567..2733)
                     /locus_tag="KWZ53_RS28215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3149..3340
                     /locus_tag="KWZ53_RS27785"
                     /old_locus_tag="KWZ53_27785"
     CDS             3149..3340
                     /locus_tag="KWZ53_RS27785"
                     /old_locus_tag="KWZ53_27785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3340..3741
                     /locus_tag="KWZ53_RS27790"
                     /old_locus_tag="KWZ53_27790"
     CDS             3340..3741
                     /locus_tag="KWZ53_RS27790"
                     /old_locus_tag="KWZ53_27790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            4536..4940
                     /locus_tag="KWZ53_RS27795"
                     /old_locus_tag="KWZ53_27795"
     CDS             4536..4940
                     /locus_tag="KWZ53_RS27795"
                     /old_locus_tag="KWZ53_27795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     Typing          complement(2626..3028)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 taaattcgtc tgtgaagtag gtagacattt ctaaagctag ttttaatagc caagtctctt
       61 caattcagtc gagaggcgtt tgaggcttac atcaagattg cttttatttt gttttaactc
      121 ttttttcata aactcagtgt gatgtgctag ctcagggtta tcagttgagc gagtcacggg
      181 aaaatcatca ctggatgaaa gtcgcccatt tttactgtag tccatggtga tacagatcag
      241 agttgcaagg tcgattaccc ggtgaagagg cagctcttct gattgtcttg accatttttc
      301 tcctgtgttt cgccaaacct ttgccgaaag ctcagtccat ccaggagtgt tccattgagc
      361 aatacctaca gatagcccca tagcatcagt gtcatcggca tgtgggccgt caatgcggtc
      421 gtaattttcg acttgaataa ttggtttatg cttcaaatgc gcgggtattt tcatcagttc
      481 gtccttaggt aatgtttgtg attattaaat tacattgttt ttctaattat aaaactcact
      541 aaatgtaagt aaatattaat atctattgtt atcatgtgct tgtgattttg tttttccaat
      601 tttatgtttt ttgcttggag agtagcggtg tttttttgtg tcaagtgtta tgataagccg
      661 tacgtttttt ttctggttta tagttcggtt attcacagca atgggcgtgg ttttctatga
      721 ctacagataa cgttaggaat attggcgact ataaaaagaa agatgtcggg gtggatgctg
      781 actgtaatcc agtctcagga aacacaccac cagtcagact aagtgagaaa cttagaaatg
      841 gaattcctcc tggtttgaaa actcagatgc gccaacaaat gaggaaaaaa catgggctct
      901 aacaataatc agaataaaga tctgcaggat aagcaagctg atcttttgga ccaaacgtat
      961 actcttggtt ggatggatgg ctatgccgaa gggtatgatg atgctattga agatactcag
     1021 aacgctttga ataaactgga aaacgaaaac gagttgctta ctgaggttgt tgaaagtaaa
     1081 gataatgtaa tcaaagagtt ggcctctagt gctggcaggg cgctgcaagc agtaaagaaa
     1141 aacaaataaa aaaaggccct tttaagggcc ttgctatttt attcgatcat accagcgaga
     1201 gctacaatgt tggggacttg tttatctagc tgcgtctgat taacctttat tatttttcct
     1261 gaaacagttt tatttcctgc agttaatgtc gcgattggaa tacctaaggc tccagatacg
     1321 acagatgctg tgtttgcatc atttacttca tactgaaaca tattcctgaa agatctttta
     1381 ttatttggcg ttgagctccc atttgggtga atacaaaaca gacttggttt tgtttgccat
     1441 actttccaaa tttcatcacc aatttcggtt actaccgtct taaatgcact ggcagatgaa
     1501 ttgttcattt gcgttaatct atttccaaca tacatatata tttgtggtag cgacatagaa
     1561 taacgattgc tattaagata gaaatctgat tgtggttcat tctgatggcg acgctcacca
     1621 taaactaaag aaagtacagc cttaactgct ctctttgatg aaccatcggc agagaaagga
     1681 attaaaaggc gctctgctgc ggttaaagct aactctgtat aaatagagaa gctagggttg
     1741 cagtcaatga atacgcagct atcttcatta ttccatgagt tgcaaatgtc actgattaaa
     1801 tcattaatcc agaggtgaac agtacgccat gcatcatggg gacctggaaa tgatgcccca
     1861 acaactcttg atgcttggag ttctaattgt tcatcgccag tgacaagata tagattattt
     1921 ggaactttac tattgtgtgt agatacattt attacatagc tagaaccagt gttggtagga
     1981 atatatggac ttctgatcct atcctcaata tatccagata ttgtctttct ctgtattgct
     2041 gaatgaatct ggtttagtgt gttttcgcca tttatcattc caccaagtaa catagaggac
     2101 gagttcgctt gtgggcacag gtcaaccacc aggacctttt tagtagggtt ctgtctggca
     2161 tattcagagg ctaactgaaa agtaaggtaa cttttcccta caccaccctt gttattccat
     2221 acggcataga tcgccatcta taactcctaa tctagttttg ttgttagctt agattcaggg
     2281 tactagagat tattgttcta ctgttagttt ctttcagctg actgcctttt tttggaacga
     2341 tattcagtcg aaggggttgg ctggctcacc atgacttatc tggagttgtc gaattccgat
     2401 taaaaggatc ttcttgagat cctaacctgc gggatgtaat cttttgctct gtaaacgaaa
     2461 aaaccacctg gggaggtggt ttttcgaagg atcagtaagt tggggaactt ctgaaccgtg
     2521 gtaacagggt gtacaagacc gctgccacca aatctgtcct ttcagtttag ctgtagttag
     2581 gctgtaactt caagaactct gcaccagtaa ttcttgtaca ccccttacca gtggctgctg
     2641 ccagtggcgt tttgtcgtgc cttccgggtt ggactcaagt cgaaagttac cggaacaggc
     2701 gcagcagtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgccta
     2761 cccggaactg agtgtcaggc gtggaatgag acaaacgcgg ccataacagc ggaatgacac
     2821 cggtaaaccg aaaggcagga acaggagagc gcacgaggga gccatcaggg ggaaacgcct
     2881 gatatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtccg tttctgtgat
     2941 gcttgtcagg ggggcggagc ctatggaaaa acggccgctg tgcggccttc ccttttctaa
     3001 attacgtgat cgctcggttt tctcgagctt tcatacgcat gctcctgccg ctcgccgcag
     3061 ccgaacggca ggagcgtagc gactgagtga gcgaggaagc ggaaaagaga acatccctac
     3121 actgagcact gacgctctga ggcctcttat gacgaaacaa cagaaaacag cgctgaacat
     3181 ggctaaattc atccagcatc aatctctgct cctgctggag aagcttaacg agcttgatct
     3241 tgatgtcgag gccgaccttt gtgagaaact ccacgatgat gcggagcatc ttttccgtac
     3301 actgtcctcg agactggatg cattacagga tggtaactga tggccagagt gtctattagt
     3361 gaggcagccc gactgacggg taagagtaga acaacactgc acaggttaat taaagcaggt
     3421 gacctgtcca cctgtagcgg tgagcgcaat gcaaaaatgg tagatacttc agagctttta
     3481 cgtgtctttg gtccctttga acaactgaag ggtgaacacc attctggaca ggtctctgaa
     3541 cagcgcgata cagcctctgt tgaccagtgt gaacaggtga ttcgtcatct gaaacaggag
     3601 attgaacacc tgaacacttt acttttgtcc aaagattcgc acattgacag cctgaaacag
     3661 gccatgctcc ttcttgaaaa tcaccaggca aaattaactg aatccccggc gccatggtgg
     3721 aaattctgga aaaaatcctg accctgtcat gcttcagttt tcctctccgg ccatcccggg
     3781 gagttcctga accttcccaa aaatagtcag atctctgaac gctcctcacc actaaaaata
     3841 cccacacccc acgcaaaatt aaaattttgc agatttgtat ttaatatcag tagtttactt
     3901 tcctgagatt tcgtttttta aattttattt atatagatcc gactctatga cgactcgtca
     3961 tagagtcccc ggcgagtcgt catagagtcg gtaacgactc agggctataa aaacaatgag
     4021 ttaataacga cccgactcta gacccgactc cccgtttggt tgttttttag tcgcggcgac
     4081 tctaggtacg actctagtgc agagtcgccg gtgaatcgtg tggtgagtcg tccggcgact
     4141 tgccataacg tgattgccgg ccgtcgacga acccgattcc tgaacgtgct gaaaaccggt
     4201 tttccggctg cgccggcaac gcttcacggc cacgcaataa attgcgtccc cgttcaccgt
     4261 tttcggatgg gaagaacgcc ggaaacagga cttaccctgt ctgaatggcg tgaatattcg
     4321 cgctatgcac ttgcgtgcat actcatgcat gccataaaaa cagagcctgc gcgtttctgg
     4381 cgggttttcg ggtggtttgt tgcctgtttt accggtttcc cgtcagaaac gccctcagcg
     4441 cgtttctgac gatgctgata acggatgtta tggtaaatta tccgcttgtc tgaaagctgg
     4501 ctgccgaagc aaccaaggaa aggagaacag acctgatgac cattttagtg acgatacagg
     4561 cccagctcgt tgtcggggag gaacaggtta taaagagcct cgctcctgag ggcatgctgg
     4621 ccgccgtgtt cgaagacgat ggccggaccg ggtatttcta tgcgctcgat gagtccgtcg
     4681 agggaaaccc gattatggac gcagtacaca tctacaatgc cgaagacgtt tcagacggtc
     4741 acattccttc tgatgttaaa attggctggt cagaagacag tcagaagtgc gtactcctga
     4801 tcaatggata cccgcacggg gcattcgatt tcgtgggaaa aaacgggtac tgcaggagtg
     4861 gttatcctcc ccctataaac aaggtgtggt ctctttccgg gcatgagtgg agcgactctg
     4921 tggatgattt tttccggtga attacggcag gctatagcct gccattatgg ttcgaaaaac
     4981 ggatgttatg g
//
