LOCUS       NZ_CP079185             4863 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC13_AI2040PC
            plasmid pAI2040P_P6, complete sequence.
ACCESSION   NZ_CP079185
VERSION     NZ_CP079185.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115569
            Assembly: GCF_019287095.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4863)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC13_AI2040PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4863)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC13_AI2040PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 85.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:03:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,583
            CDSs (total)                      :: 5,456
            Genes (coding)                    :: 5,297
            CDSs (with protein)               :: 5,297
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 69 of 159
            Pseudo Genes (incomplete)         :: 93 of 159
            Pseudo Genes (internal stop)      :: 25 of 159
            Pseudo Genes (multiple problems)  :: 24 of 159
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079185.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC13_AI2040PC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pAI2040P_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2016"
                     /collected_by="Christian medical college"
     gene            959..2257
                     /locus_tag="KWY86_RS27785"
                     /old_locus_tag="KWY86_27785"
     CDS             959..2257
                     /locus_tag="KWY86_RS27785"
                     /old_locus_tag="KWY86_27785"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_045265534.1"
                     /translation="MMVNFSLSNAFSFMDAQNMSMLAVSSAKDDINLANVVSVSDVRIL
                     KSALIFGANASGKSNLMKTISLMKDIVLHSVQAIESSITKNVIPFLLDEDGPNKPSEME
                     MTFISDGVKYRYGLSIFQGKIKEEWLYYTPKSRETILFERDGLSIEVNKAAFSESNLFI
                     KEGVIQKTREDVPFVSVVAGFNGEHSKRVVNWFNNIVFLSGSNEGMFTAITMKLINESE
                     DFKAWLKKILPAFQINDIYLDEVAPDFPFGNIKTDDDNLKNLFSSIQNFAKNQKVFSLR
                     VVKKTASGEISVPIDFESEGTKKIVYLLGPIYNAMINGNLLLVDEFDSKFHTLLSKFLF
                     RIFHAQSEGLSQIIAAVQDVNLMNTDCFRRDQIWFVDKDIKSGSSHLYSLVEYKEKQRT
                     LKSSYGHDYLSGAFDAIPLFDNLDEFEKLMPEG"
                     /name="ATP-binding protein"
     gene            2330..2698
                     /locus_tag="KWY86_RS27790"
                     /old_locus_tag="KWY86_27790"
     CDS             2330..2698
                     /locus_tag="KWY86_RS27790"
                     /old_locus_tag="KWY86_27790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045626380.1"
                     /translation="MKTTDRFISVSFRYFHNVDDIGQSIDSWRVDGSLPDLIEKLVYLT
                     ANGITKVSSDGIFTNYTRFPDSAVNDFKCPDEISVDENWGVIKNIGGQKRRVAGFLKDN
                     VFYIVFFDKDHRFWKSRK"
                     /name="hypothetical protein"
     gene            complement(2935..3048)
                     /locus_tag="KWY86_RS27795"
                     /old_locus_tag="KWY86_27795"
     CDS             complement(2935..3048)
                     /locus_tag="KWY86_RS27795"
                     /old_locus_tag="KWY86_27795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032634168.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     gene            3464..3655
                     /locus_tag="KWY86_RS27800"
                     /old_locus_tag="KWY86_27800"
     CDS             3464..3655
                     /locus_tag="KWY86_RS27800"
                     /old_locus_tag="KWY86_27800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_045265536.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELALDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3655..4077
                     /locus_tag="KWY86_RS27805"
                     /old_locus_tag="KWY86_27805"
     CDS             3655..4077
                     /locus_tag="KWY86_RS27805"
                     /old_locus_tag="KWY86_27805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_045265535.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGVNSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2936..3343)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.484"
                     /coverage="99.0"
                     /evalue="1.3e-157"
ORIGIN
        1 tatatctgtt ctcatccaat cccatgtgtc ttgggtgagc catcctgcgt attctttggt
       61 tacaccaatc acaagcaagg tgtcattatt gtccagatgc ctacgcaaac gatccgacag
      121 ttgttgcgct gtttctccgg ttgatattag ccatgtggaa tctaaagggt ggcaccaccc
      181 cggcgatttt tttaactcat catatagtgc attgtagttt tgacctgctt gattcaggtc
      241 ataagagaca cagtaaactg acatagaacc atcctcttta atcaaatgtg gggcagcccg
      301 ttagggctgc agtcacaact tacttcttct tttcacgatt aattggaatt ttgaacatcc
      361 caccgtttgg acgggtgatc cgtttgccct ttactgtgat ataagggcga aaaatgtatg
      421 cctgagactc gtctgtctgc atggtgcatt tcctattttt cgccacatga gtgttgattt
      481 ttgctatcaa aattgtactg tagcaaccaa caaatcttgt ggctggcttt atcaagctct
      541 tgaggtggta ctcaagtgcc gcatttgtgt atggtttgtt acgggttagt tctggtggta
      601 caggctaacc cacttacttc aaaaaacgtc gtttttctcc tttcatgcgt catttcctag
      661 atgtttcttc actgtatcag ctccgctgag cataaatgct acaaagagaa accatcccca
      721 tcctgaaacc gagtgtaaag ctagcactgc tgagctgaca actgcggcta aaggaaccat
      781 ttggtataga aaaaatctca tagaccccct gcatttagct ttttttaaca agtgttccat
      841 aacgtgctat ctattaaacg cacctgttgt tttagaacgc ttgtatgcta tccttaagtc
      901 ctgattttgt caatatttac tcattttgtt gtttaaggat ggcgtaaggg gtgttcttat
      961 gatggttaat tttagtcttt ctaacgcatt ttcctttatg gatgctcaaa atatgagcat
     1021 gttggcggtg tcatccgcga aagacgacat aaacttggct aacgtggttt cagtgagtga
     1081 tgttcggata ctgaaatctg ctctgatatt tggggctaac gctagcggga agtctaatct
     1141 catgaaaaca atttctttaa tgaaagatat tgttttgcat tccgtgcaag ctattgaaag
     1201 tagcattaca aagaacgtaa taccgttttt gcttgatgag gatggaccaa ataaaccatc
     1261 tgaaatggaa atgactttta tttcagatgg ggttaaatat agatatggat tgtctatttt
     1321 tcaggggaaa ataaaagaag aatggttgta ctacacacca aaatcaagag aaaccattct
     1381 ctttgaaaga gatggtcttt ctattgaggt aaataaggcg gcttttagtg agtcaaacct
     1441 ttttatcaaa gaaggggtta ttcaaaaaac aagggaggat gttccatttg tttcggttgt
     1501 tgctggtttt aatggtgagc attcaaaacg agtagttaat tggtttaaca atatcgtatt
     1561 cctttctggt tctaatgaag ggatgtttac agcaattacc atgaagttaa taaatgagtc
     1621 tgaggatttt aaggcttggc taaaaaaaat acttccagca ttccagatta atgatattta
     1681 cctcgatgag gtcgcacctg attttccatt tggaaatata aaaacagatg atgataattt
     1741 aaaaaattta tttagttcaa tacaaaattt tgcaaaaaac cagaaggttt tttctcttag
     1801 agtagtgaaa aaaacagcta gcggtgagat ttcagtacct attgattttg agtctgaggg
     1861 tactaaaaag atagtttatc ttcttggtcc aatctacaat gccatgataa acggtaactt
     1921 attgttagtt gatgagtttg attctaagtt tcacaccctt ttgtctaagt ttttgtttag
     1981 aatattccat gcgcaaagcg aggggcttag ccaaataata gctgctgttc aggatgttaa
     2041 tctaatgaac actgattgtt ttagacgtga ccagatttgg tttgttgata aagatataaa
     2101 atcaggaagt agtcatctct attctttggt tgagtataaa gagaagcagc gaactttaaa
     2161 atcatcgtat gggcatgatt atttatctgg tgcatttgat gctatcccat tgtttgataa
     2221 tttagatgaa tttgaaaaac ttatgcctga gggatgattt atgtcaaaga gaggccgcgg
     2281 tcttcgtagc tcttcgagga aagaggaaac aaaatcctca aagagcatta tgaaaactac
     2341 agatagattt atttctgtta gttttagata ttttcataac gtcgatgata ttggtcagtc
     2401 tattgattct tggagggttg acggcagttt gccagattta attgaaaagc ttgtttatct
     2461 tacagctaat gggataacaa aagtcagctc tgatggtatt tttactaact acactcgatt
     2521 tccagattca gcagttaatg attttaaatg ccctgatgaa atatcagttg atgagaactg
     2581 gggtgttata aaaaatatag gaggccagaa aagaagggtt gctggttttt taaaggataa
     2641 tgtgttttat atagtttttt ttgataagga tcatcggttt tggaagagca ggaaataggc
     2701 ttagttacga ttgtactgta tgttgaggca agatcttctt gagatcactg tgttctcgtc
     2761 gtaatctctc gctctgtaaa cgaaaaaacc gccttggcgg gcggtttttt cgaaggttcc
     2821 aagagttggc gctcttagaa ccaaggtaac tggcttggag gagcgcagta accaaaactt
     2881 gttctttcag tttagcctta accggcgcat aacttcaaga ctaactcctc taaatcagtt
     2941 accagtggct gctgccagtg gcgcttttgc atgtctttcc gggttggact caagacgata
     3001 gttaccggat aaggcgcagc agtcggactg aacggggggt tcgtgcatac agtccagctt
     3061 ggagcgaact gcctacccgg aactgagtgt ctggcgtgga atgagataaa cgcggccata
     3121 acagcggaat ggcaccggta aaccgaaagg caggaacagg agagcgcacg agggagccgc
     3181 ctatcagaaa tgataggtat ctttatagtc ctgtcgggtt tcgccaccac tgatttgagc
     3241 gtccgtttct gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc cgctgcgcgg
     3301 cctcctcttt tcctcctacc ttgatcgctc ggttttctcg agcttttata agaatggtct
     3361 tgccgctcgc cgcagccgaa cgaccggagc gtagcgactg agtgagcgag gaagcggaaa
     3421 agagactggt tttacactga gcactgacgc tctgaggctt cttatgacga aacaacagaa
     3481 aacagcgctg aacatggcta aattcatcca gaatcagtct ctgctcctgc tggagaagct
     3541 taacgagctt gctctcgatg tcgaggccga cctttgtgag aaactccacg atgatgcgga
     3601 gcatcttttc cgtacactgt cctcgagact ggatgaatta caggatggta actgatggcc
     3661 agagtgtcta ttagtgaagc ggcacggctt gttaaggtta gtcgccccac aatttacaag
     3721 atgattaaca gtgggaagtt aagttacacc tctgttgtaa agcacggtaa ggctattaaa
     3781 gttattgata cttcagagct tattagagtg tttggttctc ttgatggtgt catcgatact
     3841 gtaaaatatg atgtaaaaag tgacgcagaa tctacaggtg ttaacagcgt tggtttacat
     3901 gatttacaac atagaatcgc tttacttgaa gctgaaaacg atggtcttaa aggggctgtt
     3961 aaggctcgag atgagcatat tgattccctt cgtcaggcta tgcagcttct ggagcacaag
     4021 cacgaacctt cttcaccacc ccattccccg tggtggaaat tctggaaaaa atcctgaccc
     4081 cgtcatgctt ccgttttcct ctccggccat cccggggagt tcctgaacct tcccaaaaat
     4141 cgtcagatct ctgaacgctc ctcaccacta aaaataccca caccccacgc aaaattaaca
     4201 ttttgcagat ttgtatttaa tatcagtggg ttactttcct gaaatttcgt tttttaaatt
     4261 ttatttatat agatccgact ctatgacgag tcgtcataga gtccccggcg agtcgtcata
     4321 gagtcggtaa cgactcagga ctataaaaac aataagttaa taacgacccg actctagaca
     4381 cgactccccg tttggttgtt ttttagactc ggcgactctg ggtacgactc tagtgaagat
     4441 tcgccggtga atcgtgtggt gagtcgtccg gcgacttgcc ataacgtgat tgccggccgt
     4501 cgacgaaccc gatttctgaa cgtgctgaaa accggttttc cggctgcgcc ggcaacgctt
     4561 cacggccacg caataaattg cgtccccgtt caccgttttc ggatgggaag aacgccggaa
     4621 acaggactta ccctggctga atggcgtgaa ttttcgcgct atgcacttgc gtgcatactc
     4681 atgcatgccg taaaaacaga gcctgcgcgt ttctggcggg ttttcgggtg gtttgttgcc
     4741 tgttttaccg gtttcccgtc agaaacgccc tgaggccgtt ttagcggtgc gtacaattag
     4801 ggggttatgt taaatccaca ccagctacag acgtaaaaaa agccccgcag ggctttatat
     4861 cta
//
