LOCUS       NZ_CP079178             4991 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC11_S471PC plasmid
            pS471P_P6, complete sequence.
ACCESSION   NZ_CP079178
VERSION     NZ_CP079178.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115539
            Assembly: GCF_019287035.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC11_S471PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC11_S471PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:09:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,861
            CDSs (total)                      :: 5,736
            Genes (coding)                    :: 5,578
            CDSs (with protein)               :: 5,578
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 65 of 158
            Pseudo Genes (incomplete)         :: 89 of 158
            Pseudo Genes (internal stop)      :: 26 of 158
            Pseudo Genes (multiple problems)  :: 19 of 158
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079178.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC11_S471PC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS471P_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            join(4251..4991,1..318)
                     /locus_tag="KWY79_RS29110"
                     /old_locus_tag="KWY79_29110"
     CDS             join(4251..4991,1..318)
                     /locus_tag="KWY79_RS29110"
                     /old_locus_tag="KWY79_29110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(348..605)
                     /locus_tag="KWY79_RS29115"
                     /old_locus_tag="KWY79_29115"
     CDS             complement(348..605)
                     /locus_tag="KWY79_RS29115"
                     /old_locus_tag="KWY79_29115"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            1023..1454
                     /locus_tag="KWY79_RS29120"
                     /old_locus_tag="KWY79_29120"
     CDS             1023..1454
                     /locus_tag="KWY79_RS29120"
                     /old_locus_tag="KWY79_29120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            complement(1548..1952)
                     /locus_tag="KWY79_RS29125"
                     /old_locus_tag="KWY79_29125"
     CDS             complement(1548..1952)
                     /locus_tag="KWY79_RS29125"
                     /old_locus_tag="KWY79_29125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(2747..3148)
                     /locus_tag="KWY79_RS29130"
                     /old_locus_tag="KWY79_29130"
     CDS             complement(2747..3148)
                     /locus_tag="KWY79_RS29130"
                     /old_locus_tag="KWY79_29130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3148..3339)
                     /locus_tag="KWY79_RS29135"
                     /old_locus_tag="KWY79_29135"
     CDS             complement(3148..3339)
                     /locus_tag="KWY79_RS29135"
                     /old_locus_tag="KWY79_29135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3755..3921
                     /locus_tag="KWY79_RS29640"
                     /pseudo=""
     CDS             3755..3921
                     /locus_tag="KWY79_RS29640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          3461..3863
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 tctgccagtg catttaagac ggtagtaacc gaaattggtg atgaaatttg gaaagtatgg
       61 caaacaaaac caagtctgtt ttgtattcac ccaaatggga gctcaacgcc aaataataaa
      121 agatctttca ggaatatgtt tcagtatgaa gtaaatgatg caaacacagc atctgtcgta
      181 tctggagcct taggtattcc aatcgcgaca ttaactgcag gaaataaaac tgtttcagga
      241 aaaataataa aggttaatca gacgcagcta gataaacaag tccccaacat tgtagctctc
      301 gctggtatga tcgaataaaa tagcaaggcc cttaaaaggg ccttttttta tttgtttttc
      361 tttactgctt gcagcgccct gccagcacta gaggccaact ctttgattac attatcttta
      421 ctttcaacaa cctcagtaag caactcgttt tcgttttcca gtttattcaa agcgttctga
      481 gtatcttcaa tagcatcatc atacccttcg gcatagccat ccatccaacc aagagtatac
      541 gtttggtcca aaagatcagc ttgcttatcc tgcagatctt tattctgatt attgttagag
      601 cccatgtttt ttcctcattt gttggcgcat ctgagttttc aaaccaggag gaattccatt
      661 tctaagtttc tcacttagtc tgactggtgg tgtgtttcct gagactggat tacagtcagc
      721 atccaccccg acatctttct ttttatagtc gccaatattc ctaacgttat ctgtagtcat
      781 agaaaaccac gcccattgct gtgaataacc gaactataaa ccagaaaaaa aacgtacggc
      841 ttatcataac acttgacaca aaaaaacacc gctactctcc aagcaaaaaa cataaaattg
      901 gaaaaacaaa atcacaagca catgataaca atagatatta atatttactt acatttagtg
      961 agttttataa ttagaaaaac aatgtaattt aataatcaca aacattacct aaggacgaac
     1021 tgatgaaaat acccgcgcat ttgaagcata aaccaattat tcaagtcgaa aattacgacc
     1081 gcattgacgg cccacatgcc gatgacactg atgctatggg gctatctgta ggtattgctc
     1141 aatggaacac tcctggatgg actgagcttt cggcaaaggt ttggcgaaac acaggagaaa
     1201 aatggtcaag acaatcagaa gagctgcctc ttcaccgggt aatcgacctt gcaactctga
     1261 tctgtatcac catggactac agtaaaaatg ggcgactttc atccagtgat gattttcccg
     1321 tgactcgctc aactgataac cctgagctag cacatcacac tgagtttatg aaaaaagagt
     1381 taaaacaaaa taaaagcaat cttgatgtaa gcctcaaacg cctctcgact gaattgaaga
     1441 gacttggcta ttaaaactag ctttagaaat gtctacctac ttcacagacg aatttaccat
     1501 aacatccgtt tttcgaacca taatggcagg ctatagcctg ccgtaattca ccggaaaaaa
     1561 tcatccacag agtcgctcca ctcatgcccg gaaagagacc acaccttgtt tataggggga
     1621 ggataaccac tcctgcagta cccgtttttt cccacgaaat cgaatgcccc gtgcgggtat
     1681 ccattgatca ggagtacgca cttctgactg tcttctgacc agccaatttt aacatcagaa
     1741 ggaatgtgac cgtctgaaac gtcttcggca ttgtagatgt gtactgcgtc cataatcggg
     1801 tttccctcga cggactcatc gagcgcatag aaatacccgg tccggccatc gtcttcgaac
     1861 acggcggcca gcatgccctc aggagcgagg ctctttataa cctgttcctc cccgacaacg
     1921 agctgggcct gtatcgtcac taaaatggtc atcaggtctg ttctcctttc cttggttgct
     1981 tcggcagcca gctttcagac aagcggataa tttaccataa catccgttat cagcatcgtc
     2041 agaaacgcgc tgagggcgtt tctgacggga aaccggtaaa acaggcaaca aaccacccga
     2101 aaacccgcca gaaacgcgca ggctctgttt ttatggcatg catgagtatg cacgcaagtg
     2161 catagcgcga atattcacgc cattcagaca gggtaagtcc tgtttccggc gttcttccca
     2221 tccgaaaacg gtgaacgggg acgcaattta ttgcgtggcc gtgaagcgtt gccggcgcag
     2281 ccggaaaacc ggttttcagc acgttcagga atcgggttcg tcgacggccg gcaatcacgt
     2341 tatggcaagt cgccggacga ctcaccacac gattcaccgg cgactctgca ctagagtcgt
     2401 acctagagtc gccgcgacta aaaaacaacc aaacggggag tcgggtctag agtcgggtcg
     2461 ttattaactc attgttttta tagccctgag tcgttaccga ctctatgacg actcgccggg
     2521 gactctatga cgagtcgtca tagagtcgga tctatataaa taaaatttaa aaaacgaaat
     2581 ctcaggaaag taaactactg atattaaata caaatctgca aaattttaat tttgcgtggg
     2641 gtgtgggtat ttttagtggt gaggagcgtt cagagatctg actatttttg ggaaggttca
     2701 ggaactcccc gggatggccg gagaggaaaa ctgaagcatg acagggtcag gattttttcc
     2761 agaatttcca ccatggcgcc ggggattcag ttaattttgc ctggtgattt tcaagaagga
     2821 gcatggcctg tttcaggctg tcaatgtgcg aatctttgga caaaagtaaa gtgttcaggt
     2881 gttcaatctc ctgtttcaga tgacgaatca cctgttcaca ctggtcaaca gaggctgtat
     2941 cgcgctgttc agagacctgt ccagaatggt gttcaccctt cagttgttca aagggaccaa
     3001 agacacgtaa aagctctgaa gtatctacca tttttgcatt gcgctcaccg ctacaggtgg
     3061 acaggtcacc tgctttaatt aacctgtgca gtgttgttct actcttaccc gtcagtcggg
     3121 ctgcctcact aatagacact ctggccatca gttaccatcc tgtaatgcat ccagtctcga
     3181 ggacagtgta cggaaaagat gctccgcatc atcgtggagt ttctcacaaa ggtcggcctc
     3241 gacatcaaga tcaagctcgt taagcttctc cagcaggagc agagattgat gctggatgaa
     3301 tttagccatg ttcagcgctg ttttctgttg tttcgtcata agaggcctca gagcgtcagt
     3361 gctcagtgta gggatgttct cttttccgct tcctcgctca ctcagtcgct acgctcctgc
     3421 cgttcggctg cggcgagcgg caggagcatg cgtatgaaag ctcgagaaaa ccgagcgatc
     3481 acgtaattta gaaaagggaa ggccgcacag cggccgtttt tccataggct ccgcccccct
     3541 gacaagcatc acagaaacgg acgctcaaat cagtggtggc gaaacccgac aggactataa
     3601 agatatcagg cgtttccccc tgatggctcc ctcgtgcgct ctcctgttcc tgcctttcgg
     3661 tttaccggtg tcattccgct gttatggccg cgtttgtctc attccacgcc tgacactcag
     3721 ttccgggtag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg ttcagtccga
     3781 ctgctgcgcc tgttccggta actttcgact tgagtccaac ccggaaggca cgacaaaacg
     3841 ccactggcag cagccactgg taaggggtgt acaagaatta ctggtgcaga gttcttgaag
     3901 ttacagccta actacagcta aactgaaagg acagatttgg tggcagcggt cttgtacacc
     3961 ctgttaccac ggttcagaag ttccccaact tactgatcct tcgaaaaacc acctccccag
     4021 gtggtttttt cgtttacaga gcaaaagatt acatcccgca ggttaggatc tcaagaagat
     4081 ccttttaatc ggaattcgac aactccagat aagtcatggt gagccagcca accccttcga
     4141 ctgaatatcg ttccaaaaaa aggcagtcag ctgaaagaaa ctaacagtag aacaataatc
     4201 tctagtaccc tgaatctaag ctaacaacaa aactagatta ggagttatag atggcgatct
     4261 atgccgtatg gaataacaag ggtggtgtag ggaaaagtta ccttactttt cagttagcct
     4321 ctgaatatgc cagacagaac cctactaaaa aggtcctggt ggttgacctg tgcccacaag
     4381 cgaactcgtc ctctatgtta cttggtggaa tgataaatgg cgaaaacaca ctaaaccaga
     4441 ttcattcagc aatacagaga aagacaatat ctggatatat tgaggatagg atcagaagtc
     4501 catatattcc taccaacact ggttctagct atgtaataaa tgtatctaca cacaatagta
     4561 aagttccaaa taatctatat cttgtcactg gcgatgaaca attagaactc caagcatcaa
     4621 gagttgttgg ggcatcattt ccaggtcccc atgatgcatg gcgtactgtt cacctctgga
     4681 ttaatgattt aatcagtgac atttgcaact catggaataa tgaagatagc tgcgtattca
     4741 ttgactgcaa ccctagcttc tctatttata cagagttagc tttaaccgca gcagagcgcc
     4801 ttttaattcc tttctctgcc gatggttcat caaagagagc agttaaggct gtactttctt
     4861 tagtttatgg tgagcgtcgc catcagaatg aaccacaatc agatttctat cttaatagca
     4921 atcgttattc tatgtcgcta ccacaaatat atatgtatgt tggaaataga ttaacgcaaa
     4981 tgaacaattc a
//
