LOCUS       NZ_CP079177             5251 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC11_S471PC plasmid
            pS471P_P5, complete sequence.
ACCESSION   NZ_CP079177
VERSION     NZ_CP079177.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115539
            Assembly: GCF_019287035.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5251)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC11_S471PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5251)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC11_S471PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:09:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,861
            CDSs (total)                      :: 5,736
            Genes (coding)                    :: 5,578
            CDSs (with protein)               :: 5,578
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 65 of 158
            Pseudo Genes (incomplete)         :: 89 of 158
            Pseudo Genes (internal stop)      :: 26 of 158
            Pseudo Genes (multiple problems)  :: 19 of 158
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079177.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC11_S471PC"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pS471P_P5"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2014"
                     /collected_by="Christian medical college"
     gene            119..604
                     /locus_tag="KWY79_RS29075"
                     /old_locus_tag="KWY79_29075"
     CDS             119..604
                     /locus_tag="KWY79_RS29075"
                     /old_locus_tag="KWY79_29075"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_013631087.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIATSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            608..820
                     /locus_tag="KWY79_RS29080"
                     /old_locus_tag="KWY79_29080"
     CDS             608..820
                     /locus_tag="KWY79_RS29080"
                     /old_locus_tag="KWY79_29080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1453..2808
                     /locus_tag="KWY79_RS29085"
                     /old_locus_tag="KWY79_29085"
     CDS             1453..2808
                     /locus_tag="KWY79_RS29085"
                     /old_locus_tag="KWY79_29085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000498067.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_014386473.1"
                     /translation="MFVYLTIENFRSVKEKSTLNLSASGSSNHLTTHIYKNDGMNVGTL
                     MSAGIYGANASGKSNVLMAFEAIKFIATESGDLKEGKRIPCYEPYALSSATNEAPVKFE
                     AEFYSVEGNRFSYEVAFIKNRILFESLDYYPSRVKANLFTRDESDTWETIKFGGHYKGG
                     IKKIPFFPNNSYLAKAGNNAASPDIIKEAYNFFRKGIRHIGLNEKIRISSFGEREDVVN
                     ETAKVLCMVDTGVSGISVREVEAEIPIKMDEEIPQEIKEIIEEDYKYRYMFSHPTDEGG
                     SVSFPMGRESEGTQKLFEIIPLIRSAFNDSMVVIVDELDNSLHPHIADLIVKLFNDPDV
                     NKKGSQLVFSTHNMQLMAPEKMRRDQIWFCEKNKGASSLYSLDDFDKKKIKTTTPYAAW
                     YDEGRFGGVPDINYLKVASFISGDISLVMPDIDVKELSDGFFEEFDGDLSDE"
                     /name="ATP-binding protein"
     gene            2801..3421
                     /locus_tag="KWY79_RS29090"
                     /old_locus_tag="KWY79_29090"
     CDS             2801..3421
                     /locus_tag="KWY79_RS29090"
                     /old_locus_tag="KWY79_29090"
                     /inference="COORDINATES: protein motif:HMM:NF025084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB family protein"
                     /protein_id="WP_023312615.1"
                     /translation="MSKKHGNNKKVPQVMYIYCEGEKTEPLYLEAYISDRSKRTLSVFK
                     IPKTRKNTPEQLVDEAIKKKNSSSSAEGDVFWVVYDQEHLTPSSISCHQKAWNKANRHG
                     INIAISCVCFELWLLLHFGFTTKDFSSYDNLMSSSPLKKLITNYDKGSKLTYLAIRERI
                     GTAKDNARKLDIYAKTNYKNTHEPYLFPCYTSFHELLKAIDDF"
                     /name="RloB family protein"
     gene            complement(3574..3735)
                     /locus_tag="KWY79_RS29095"
                     /old_locus_tag="KWY79_29095"
     CDS             complement(3574..3735)
                     /locus_tag="KWY79_RS29095"
                     /old_locus_tag="KWY79_29095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023144844.1"
                     /translation="MHEPPVQSDRCAFSGNYHLESNPERHGSSPLAAAIGNGLEEVSLE
                     VLRQLRLN"
                     /name="hypothetical protein"
     gene            4372..4692
                     /locus_tag="KWY79_RS29100"
                     /old_locus_tag="KWY79_29100"
     CDS             4372..4692
                     /locus_tag="KWY79_RS29100"
                     /old_locus_tag="KWY79_29100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_014386475.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          4086..4258
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          complement(3623..4139)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.462"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          4656..5251
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.96"
                     /coverage="95.0"
                     /evalue="2.62e-112"
ORIGIN
        1 gaggacgtca caggggcgct cacagcggca ggttttgagg tggtccgcac cacaaaaaac
       61 agtatcagca ttgccgaccc ggacgggggg cgaaacatcc gactgaaggg agccatttat
      121 gagcagtctt ttagcgctgg cgaaggactt ggagcagcaa tcgaaagcgc agcagcagag
      181 taccggcgag atgctgaaag ccgcattcag cgagcacgag cagtctgtaa aagcggaact
      241 gagcgcaagc gcgaagagaa tcagcgacgc catcagcgcc cacgagcagg gtatgaccgc
      301 ggcgatgcag tcgaaccggc tgagcgtgct gcgtatggtc ggccggacgt ggctgaccat
      361 caccctggtc tcggtactgc tgatcgccac gagcgggagc attctgtggt ggcaggggca
      421 gcagatcacc gggaattacc agactatccg ggcgcaggag cggacgcagg ccatgctgtc
      481 ggagaagaac cacggcgtgc agctgtcgct ctgcggggag aagaaactgt cctgcgtcaa
      541 agtgaacccg aaagcgggag cttacgggga ggaagggaac tggatggtac tggagaggaa
      601 atagcccatg acggaactgg aaaaacagtt gctgaccgca ttagagcagc tacatcagga
      661 ctactcgcaa aggctggacg agtgggagag cgccttcgcg gaatggcaga agatgtctgg
      721 tcttatgcaa cgggagaacg cggcgctgaa cgagcgcgtc acgcgcttga gtcagcaggt
      781 ggcgaacttg agcaggcagt tacagcgttt gagccagtag tgcagcggca tgaaatggcg
      841 gtggccgccg aacgggcata cgagcagaaa cagcatgaaa aagagctggc ggaaacccgt
      901 tcccggcagc ggagctatga cggtccgacg ctgggctgac tgcgcgcatc cagtgacaaa
      961 ccccaagaag aagggctcat aaatttcccg ctaaatacgg tcgtgatgtt tccatcacag
     1021 cgtatacaac ggagggatta tgagactgtt taacgtgatt gagacggtgc tgaattgcct
     1081 gtacatggcg ctggagatct gggactggct ggagaagcat tttcctgttt ttaaggcgtt
     1141 catccggatt ctggcctgaa atcagaccgt atgcatctgg ctgcatgacc atgcagccgg
     1201 gtaaaattta tctgtcacga acggggcggt gtatcgggtg gtttgttgcc ggttttacct
     1261 gactgccgcc ccgtttgtgg cgaacctgtc cggagcggtg cgggcaacag atgttatggt
     1321 aaatagcgtg taattataaa tagcacaacg ttttttaagg aagatgttgt tccaaaatta
     1381 aaacatatag gatatctttc ctatgattga tttttcgctt ttttggcgaa aaatccccgt
     1441 taggaggtat gcatgtttgt ttatttgact attgaaaatt ttaggtcggt taaggaaaaa
     1501 tcgacattaa acttgagcgc atccggttct agtaaccatt taacaactca tatctataaa
     1561 aatgatggaa tgaatgttgg aacgctcatg agtgctggga tttatggtgc taatgcgtct
     1621 ggtaaatcta acgttctcat ggcttttgaa gctataaaat ttatcgcaac agaaagcggt
     1681 gatttgaaag aaggtaaacg gattccctgc tatgagccat atgctctttc ttcggctacg
     1741 aatgaggctc ctgtaaagtt tgaggctgaa ttttattctg ttgaggggaa tcggttcagt
     1801 tatgaagttg cttttattaa aaatcggatt ttatttgaat cattagacta ttatccatct
     1861 agggttaaag caaatttatt tactagagat gagagcgaca cctgggaaac aatcaagttt
     1921 ggtgggcatt ataaaggagg tattaaaaaa ataccattct tccctaataa ttcatactta
     1981 gcgaaagcag gtaataatgc cgcatcacca gacataatta aagaagctta taactttttt
     2041 agaaagggaa ttagacatat aggtttaaat gaaaagataa gaatatcttc ttttggggag
     2101 agggaggacg tcgtaaatga aacggccaag gttttatgca tggttgacac tggtgtttcc
     2161 ggtatatctg tacgggaggt tgaggcggaa ataccaataa aaatggatga ggaaatccct
     2221 caagaaataa aggagataat tgaagaagat tataaatatc gttatatgtt ctctcatcct
     2281 actgatgaag gggggagtgt ttctttccct atggggagag agtctgaagg cacccaaaaa
     2341 ttatttgaaa tcatacctct aattagatct gcgtttaatg atagtatggt tgtaattgtt
     2401 gatgagttag ataatagctt gcacccgcat attgctgact tgattgttaa gttatttaat
     2461 gatcctgatg tcaataaaaa aggctcacaa cttgtattct caacccataa tatgcagtta
     2521 atggctccag agaaaatgag aagagatcag atatggtttt gtgaaaaaaa taaaggtgcg
     2581 tcgtctcttt atagcttaga tgattttgat aagaaaaaga taaaaacaac aacaccttac
     2641 gcagcttggt atgatgaggg taggtttggt ggggttcccg acataaacta cttaaaggta
     2701 gcctcattta tatctggtga tatatccttg gtaatgccgg atattgacgt caaagaattg
     2761 tctgatggtt tttttgaaga gtttgacggg gatctttctg atgagtaaaa aacatggaaa
     2821 taataagaaa gtcccacaag taatgtatat atactgtgag ggtgagaaaa ccgaaccatt
     2881 ataccttgag gcttatattt cagacagatc taaaagaact ttaagtgtat ttaaaatacc
     2941 taaaacaagg aaaaatacac ctgagcagtt ggtggatgag gcgataaaga aaaagaattc
     3001 atcatcttcc gcagaaggtg acgtcttttg ggttgtttat gatcaagagc atctgacgcc
     3061 ttcgtctatt tcatgtcatc aaaaggcatg gaataaagct aataggcatg ggataaatat
     3121 agcaatatcc tgtgtttgtt ttgaattatg gttattgttg catttcggct tcacaaccaa
     3181 agatttttcg tcgtatgata atttgatgtc tagctccccg ctaaaaaaat taataactaa
     3241 ctatgataaa ggtagtaaac taacttacct tgctataaga gagaggattg gtactgcgaa
     3301 agataacgca agaaagctag atatttacgc taaaactaat tataaaaaca cgcacgaacc
     3361 ttatctattt ccatgttata catcattcca tgagctactt aaggcgattg acgacttttg
     3421 aagtaatcca ttgaccatgg cttattacag gctgtaatct atgaaaaata aaaaccaccg
     3481 ctaccaacgg tggtttttgg aaggtacatg agctaccaac ttatgtaccg ggtaactggc
     3541 ttagagggag cgcagtcacc aaaaattgtc ctttcagttt agccttaact ggcgcagaac
     3601 ttcaagactc acttcctcta atccgttacc aatggctgct gccagtggcg atgaaccgtg
     3661 tctttccggg ttggactcaa gatgatagtt accggagaag gcgcagcggt cggactgaac
     3721 ggggggttcg tgcatacagt ccagcttgga gcgaactgcc tacccggaac tgagtgtcag
     3781 gcgtggaatg agacaaacgc ggccataaca gcggaatgac accggtaaac cgaaaggcag
     3841 gaacaggaga gcgcacgagg gagccaccag ggggaaacgc ctggtatctt tatagtcctg
     3901 tcgggtttcg ccaccactga tttgagcgtc agatttcgtg atgcttgtca ggggggcgga
     3961 gcctatggaa aaacggcagc ggcgcatcct ttttctgccc cgtttgtcat gccatatgcc
     4021 ttcgctcttc tccgtgtgca ggtaacgccc gccgcagccg aacggcagga gcggcagcga
     4081 ctgagtgagc gaggaggcgt catatcctct gaacttccat tttctgcctt acgcccgcag
     4141 ctgcattttc ctctgtcaca tgaagcactt tcctgattac cgcactcatg ccaacataat
     4201 aagccagtat acactccgct agcgctacgt gactggttca gggctgcgcc ccgaaacccg
     4261 ctaaaagcga ctgacgcgcc tgcggcttgt ccaacaccgt gccgaccggg aaacatttcc
     4321 cgcccgtccc ggtgttatca ggaggctact ctggcagaca aacgcaacaa gatgctcacg
     4381 atgtgggtga cggaagacga acaccggcgg ctgctcgagc ggtgcgacgg caagcagctg
     4441 gcggcgtgga tgcgtcagac ctgcctcgat gagaagccgg cgcgtgccgg cagactgccg
     4501 tcgatatcgc cggcgctgct gcgccagctt gccggtatgg ggaacaacct gaaccagatc
     4561 gcccggaaag tgaatgccgg tggtgccggt catgaccggg tgcagattgt ggccgcactg
     4621 atggcaatcg acgcgggact ggagcggctg cggcatgcgg tgctggaaaa agggggggat
     4681 gatgatcgtt aaatttcacc cccgggggcg cggtggtggt gccggtccgg tggattacct
     4741 gctgggaaaa gaccggcagc gcgagggggc gaccgtgctg cagggaaaac cggaggaagt
     4801 ccgggagctt atcgatgcct cgccgtatgc gaaaaagtac acctccggcg tgctgtcgtt
     4861 cgcggaggct gaactgccgc ccgggcagcg ggagcagatc atggccagct ttgagcgggt
     4921 tctgatgccc gggctcgata aagaccagta cagcattctg tgggtggagc acaccgacaa
     4981 ggggcggctg gagctgaatt tcctgatccc caacactgaa ctgctgaccg ggaaacgcct
     5041 gcagccgtac tacgatcgcg ccgaccggcc gcgcatcgat gcctggcaga ccgtggtgaa
     5101 cggcaggctg gggctgcatg atccaaacgc cccggagaac cgacggttac tggtcacgcc
     5161 gtccgcactg ccggaaacga agctggaagc cgctcaggcg attacacgtg ggttgctggc
     5221 cttagcctca tccggggagc tcaaaacgcg c
//
