LOCUS       NZ_CP079149             1597 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC06_CMC387MC
            plasmid pCMC387M_P4, complete sequence.
ACCESSION   NZ_CP079149
VERSION     NZ_CP079149.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115183
            Assembly: GCF_019286695.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC06_CMC387MC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC06_CMC387MC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:04:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,838
            CDSs (total)                      :: 5,716
            Genes (coding)                    :: 5,534
            CDSs (with protein)               :: 5,534
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 72 of 182
            Pseudo Genes (incomplete)         :: 112 of 182
            Pseudo Genes (internal stop)      :: 26 of 182
            Pseudo Genes (multiple problems)  :: 23 of 182
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079149.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC06_CMC387MC"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pCMC387M_P4"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian medical college"
     gene            1..441
                     /locus_tag="KWY71_RS29005"
                     /old_locus_tag="KWY71_29005"
     CDS             1..441
                     /locus_tag="KWY71_RS29005"
                     /old_locus_tag="KWY71_29005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          complement(825..1075)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.254"
                     /coverage="96.0"
                     /evalue="1.43e-100"
ORIGIN
        1 atgagtaagg atgtcgagag aatcactcag ataaatgacc agggtgagat tatcggcggc
       61 ttcgttgccg ttatccgccc taaacaaaaa tcagcatttc agaggcattt caccatgaat
      121 caagacgcat tacggatctt ggctaaggaa ttaaccgggg agcaattcaa ggtcttaatg
      181 ctgatgcttg cagatctgga ttacgaaaac ttcattcaga tcgcccaagc agatattgct
      241 gaaactttag ggatgcagaa aacgaatgtt agtcgcgccg ttcgcgcgct actggatgtt
      301 ggggtgatct ttgagggacc taaagttggc agatcaaaaa cataccggct gaatgaacaa
      361 tttggttgga aaggcaccgt aaccaaccac aaaaaggcac tcaaaaacgg ctttagtgtc
      421 attcagggcg gccgaattta aagagccagc ggcaggcgga caatcagggg ctacgtgtta
      481 acgttttgac catgattgtc tatcctgcat tgctcttttg ccgcctcaaa atcccttgca
      541 ttttttgcac ccccgttctc cagaactacg caattcgaac aggtcctgtg actagacgtt
      601 gatcgggcaa tacgctaaaa cacttccgcg cgtttctggc ataaaccaac catgggatgg
      661 tttgtgttag cagcaagcgc cagaaacgcg ctcaatctaa tcttcgccat cgtttgccac
      721 ggtttcggca gcgccttgag cgcaaccgga aaccgtctgg ggagaacccc agacccccat
      781 tgctgtaata tcaacggtct acgaccacct accagctgag tgactgcctg ttccgtgcag
      841 ttgggctttg cagggggctg gcgcggttcc tggcgacctg aaagcccctg gttaggggta
      901 tcggcgcgcc tgacctcctg agagcctctg taagcgtttt tcgcgccttc catgccctga
      961 cgggcattta aaacccgttt cgtgcgtctg agagcttctg agcgcgtttg aagggctatc
     1021 tgacgactca tccccgaaag aacaacaacg gaatcacagg caatatgcga gaggtgacac
     1081 cgctcgccgc agccccagcg accgaacgta gtgagcgagt gggcgaggaa gcggaagaga
     1141 accggaaacc acattgagca cgtacgcact gatgcggggt gtcggggtga agccctgacc
     1201 agatggcaaa cggaatatcg tcgcgggtga cggtattaca tttgcacatc ctgtcccgat
     1261 ttctgcggag tttaacggtg aacggacggc aaaaaacgtg caggagctgt tgaacgtgaa
     1321 aaccacgaaa tctggcaaaa atcacagctg acgaggcttg cagaggagta agccagtata
     1381 cactccgcta tcgctacgtg actgggtcat ggctgcgccc cgacacccca aagagcagct
     1441 aggataaata tctaatggaa tcaatgcgtt agatgcctaa tataaagata cagaaaggag
     1501 aataaaaaca ttaataaaat ctaagggtta cagttgacat agttatcaat aatgataaca
     1561 ctgttatcat tattgataac tcaaataggg ttcaaag
//
