LOCUS       NZ_CP079144             1209 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain WRC05_CMC387PC
            plasmid pCMC387P_P6, complete sequence.
ACCESSION   NZ_CP079144
VERSION     NZ_CP079144.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20115179
            Assembly: GCF_019286635.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Complete genome of Carbapenem resistant Klebsiella
            pneumoniae_WRC05_CMC387PC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Balaji,V., Snehal,P., Yamuna,B.D. and Monisha,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method :: UNICYCLER v. V.0.4.8; CANU v. V.2.1.1
            Assembly Name                     :: WRC05_CMC387PC
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 91.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:26:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,802
            CDSs (total)                      :: 5,686
            Genes (coding)                    :: 5,500
            CDSs (with protein)               :: 5,500
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 72 of 186
            Pseudo Genes (incomplete)         :: 116 of 186
            Pseudo Genes (internal stop)      :: 26 of 186
            Pseudo Genes (multiple problems)  :: 23 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP079144.1.
            Bacteria and source DNA available from Christian medical college.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WRC05_CMC387PC"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pCMC387P_P6"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2018"
                     /collected_by="Christian medical college"
     gene            167..940
                     /locus_tag="KWY70_RS28815"
                     /old_locus_tag="KWY70_28815"
     CDS             167..940
                     /locus_tag="KWY70_RS28815"
                     /old_locus_tag="KWY70_28815"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="WP_160333894.1"
                     /translation="MVPVKGGEFLMGDFGPLVGQKLPFSINQDDKVLHKVVLSDFSISK
                     FKVTNDDYNKYLQITGVKKSPIHIFLKNYPSLQKGDYSVGVTWQQAKDYCQWLGKGSGK
                     KIDLPTEAQWEYAARSRGQYFQFPTNNGEYLPGKNVPGKDELDIYTDGFGFPFYPVGKY
                     PPNPLGLYDMGLSGSEWTNDWYAADYYSHSPVNDPQGPAQGTKKVLRGYIGGDRQYALT
                     MFRQSKLPVPKIDKDDDYEKYGVGPQYVFRCVVNK"
                     /name="SUMF1/EgtB/PvdO family nonheme iron enzyme"
     gene            1116..>1208
                     /locus_tag="KWY70_RS28820"
                     /old_locus_tag="KWY70_28820"
                     /pseudo=""
     CDS             1116..>1208
                     /locus_tag="KWY70_RS28820"
                     /old_locus_tag="KWY70_28820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227563.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase modifying factor 1"
                     /name="sulfatase modifying factor 1"
ORIGIN
        1 cccgacgggg acaatgactg cctgatgcaa tggctgaggt gataagatga gaaaattaat
       61 cgtagttgct tccgttgcag ccggtttact gaccgggtgc gaccagaaga gtactggcaa
      121 gcgtgaaacc ctgtctgaag cgcttgttgc taagtcgctt tctaacatgg ttcccgttaa
      181 gggcggcgag ttcttaatgg gggattttgg cccattagtc ggtcaaaaac tacctttcag
      241 cataaaccag gatgataagg tattacataa ggttgtatta agtgattttt cgatatcaaa
      301 gtttaaagtt accaacgatg attataataa atatctgcaa ataacagggg taaaaaaatc
      361 acccatccat atttttttaa aaaattatcc atccttgcaa aaaggagatt attctgttgg
      421 tgttacctgg caacaggcaa aagactattg tcagtggtta ggtaaggggt ctggtaaaaa
      481 gattgattta ccaacagagg cgcaatggga atatgcagca agatccagag gtcaatactt
      541 tcagtttcca acaaataatg gtgagtattt acctggaaaa aatgttccgg gtaaagatga
      601 attagatata tatacagatg gttttggttt cccattttat ccagtaggca aatatccccc
      661 aaaccccctg ggtctgtatg atatggggct cagtggctct gaatggacta atgactggta
      721 tgcagcagat tattactctc attcaccggt aaacgatccc cagggacctg cgcagggtac
      781 taaaaaagtc ctgcgtggat atattggtgg cgacagacag tacgctttaa ccatgttcag
      841 gcaatcaaaa ttgccagttc cgaagatcga taaagacgat gactatgaaa aatatggtgt
      901 tggtccgcag tatgtatttc gttgtgtcgt taataaataa tgtgtgatgc catctcttat
      961 tttaatcgaa tcagaatgct caacgaatat tcggctgaac cggataggat atttaatcta
     1021 tcccggattt cctgatgtca gaatatcttg ccatgattga tgagctgcac ccgacgggta
     1081 caatgactgc ctgatgcaat ggtgaaggtg ataagatgag aaaattaatc gtagttgctt
     1141 ctgttgccgc cagtttactg ctcgggtgcg accagaagag tactgacaag cgtgaaacct
     1201 tgtctgaaa
//
